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Record Information
Version2.0
Created at2020-12-09 00:57:51 UTC
Updated at2021-07-15 16:47:28 UTC
NP-MRD IDNP0003822
Secondary Accession NumbersNone
Natural Product Identification
Common NameDicerandrol A
Provided ByNPAtlasNPAtlas Logo
Description(5R,5'R,6R,6'R,10aR,10'aR)-5'-(acetyloxy)-1,1',9,9'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-8,8'-dioxo-5H,5'H,6H,6'H,7H,7'H,8H,8'H,10aH,10'aH-[2,2'-bixanthene]-5-yl acetate belongs to the class of organic compounds known as xanthenes. These are polycyclic aromatic compounds containing a xanthene moiety, which consists of two benzene rings joined to each other by a pyran ring. Dicerandrol A is found in Penicillium. Dicerandrol A was first documented in 2008 (PMID: 17950385). Based on a literature review very few articles have been published on (5R,5'R,6R,6'R,10aR,10'aR)-5'-(acetyloxy)-1,1',9,9'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-8,8'-dioxo-5H,5'H,6H,6'H,7H,7'H,8H,8'H,10aH,10'aH-[2,2'-bixanthene]-5-yl acetate (PMID: 24335522) (PMID: 23412059) (PMID: 20372017).
Structure
Thumb
Synonyms
ValueSource
(5R,5'r,6R,6'r,10AR,10'ar)-5'-(acetyloxy)-1,1',9,9'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-8,8'-dioxo-5H,5'H,6H,6'H,7H,7'H,8H,8'H,10ah,10'ah-[2,2'-bixanthene]-5-yl acetic acidGenerator
Chemical FormulaC34H34O14
Average Mass666.6320 Da
Monoisotopic Mass666.19486 Da
IUPAC Name(5R,5'R,6R,6'R,10aR,10'aR)-5'-(acetyloxy)-1,1',9,9'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-8,8'-dioxo-5H,5'H,6H,6'H,7H,7'H,8H,8'H,10aH,10'aH-[2,2'-bixanthene]-5-yl acetate
Traditional Name(5R,5'R,6R,6'R,10aR,10'aR)-5'-(acetyloxy)-1,1',9,9'-tetrahydroxy-10a,10'a-bis(hydroxymethyl)-6,6'-dimethyl-8,8'-dioxo-5H,5'H,6H,6'H,7H,7'H-[2,2'-bixanthene]-5-yl acetate
CAS Registry NumberNot Available
SMILES
C[C@@H]1CC(=O)C2=C(O)C3=C(O[C@]2(CO)[C@@H]1OC(C)=O)C=CC(=C3O)C1=C(O)C2=C(O[C@]3(CO)[C@H](OC(C)=O)[C@H](C)CC(=O)C3=C2O)C=C1
InChI Identifier
InChI=1S/C34H34O14/c1-13-9-19(39)25-29(43)23-21(47-33(25,11-35)31(13)45-15(3)37)7-5-17(27(23)41)18-6-8-22-24(28(18)42)30(44)26-20(40)10-14(2)32(46-16(4)38)34(26,12-36)48-22/h5-8,13-14,31-32,35-36,41-44H,9-12H2,1-4H3/t13-,14-,31-,32-,33+,34+/m1/s1
InChI KeyKMPJMYCHERZRLM-FNCICBJWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PenicilliumNPAtlas
Species Where Detected
Species NameSourceReference
Phomopsis longicollaKNApSAcK Database
Phomopsis sp. PSU-D15KNApSAcK Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as xanthenes. These are polycyclic aromatic compounds containing a xanthene moiety, which consists of two benzene rings joined to each other by a pyran ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrans
Sub Class1-benzopyrans
Direct ParentXanthenes
Alternative Parents
Substituents
  • Xanthene
  • 1-hydroxy-4-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Dicarboxylic acid or derivatives
  • Vinylogous acid
  • Ketone
  • Carboxylic acid ester
  • Oxacycle
  • Ether
  • Enol
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.69ALOGPS
logP0.83ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)4.92ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area226.58 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity165.38 m³·mol⁻¹ChemAxon
Polarizability67.3 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA010303
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8434371
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10258888
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Rukachaisirikul V, Sommart U, Phongpaichit S, Sakayaroj J, Kirtikara K: Metabolites from the endophytic fungus Phomopsis sp. PSU-D15. Phytochemistry. 2008 Feb;69(3):783-7. doi: 10.1016/j.phytochem.2007.09.006. Epub 2007 Oct 22. [PubMed:17950385 ]
  2. Ding B, Yuan J, Huang X, Wen W, Zhu X, Liu Y, Li H, Lu Y, He L, Tan H, She Z: New dimeric members of the phomoxanthone family: phomolactonexanthones A, B and deacetylphomoxanthone C isolated from the fungus Phomopsis sp. Mar Drugs. 2013 Dec 11;11(12):4961-72. doi: 10.3390/md11124961. [PubMed:24335522 ]
  3. Choi JN, Kim J, Ponnusamy K, Lim C, Kim JG, Muthaiya MJ, Lee C: Metabolic changes of Phomopsis longicolla fermentation and its effect on antimicrobial activity against Xanthomonas oryzae. J Microbiol Biotechnol. 2013 Feb;23(2):177-83. doi: 10.4014/jmb.1210.10020. [PubMed:23412059 ]
  4. Lim C, Kim J, Choi JN, Ponnusamy K, Jeon Y, Kim SU, Kim JG, Lee C: Identification, fermentation, and bioactivity against Xanthomonas oryzae of antimicrobial metabolites isolated from Phomopsis longicolla S1B4. J Microbiol Biotechnol. 2010 Mar;20(3):494-500. [PubMed:20372017 ]