NP-MRD: Showing NP-Card for Ab-bis-homopanol (NP0003794)

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Record Information

Version

1.0

Created at

2020-12-09 00:56:44 UTC

Updated at

2021-07-15 16:47:24 UTC

NP-MRD ID

NP0003794

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Ab-bis-homopanol

Provided By

NPAtlas

Description

Ab-bis-homopanol is found in Frankia sp. It was first documented in 2001 (PMID: 11488925). Based on a literature review very few articles have been published on (2R,3R,4R,7R)-7-[(1R,2R,5S,6R,9S,10R,13R,14S,19S)-1,2,9,14,18,18-hexamethylpentacyclo[11.8.0.0²,¹⁰.0⁵,⁹.0¹⁴,¹⁹]Henicosan-6-yl]octane-1,2,3,4-tetrol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012117483D          

101105  0  0  0  0            999 V2000
    4.2831    1.3032   -0.7196 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0473   -0.1392   -0.4732 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3828   -1.0384   -1.5985 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7233   -1.1884   -2.1473 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8479   -1.7681   -1.4332 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9581   -1.7567   -2.3656 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4068   -1.3156   -0.1709 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.4391   -2.2853    0.2184 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1891   -0.0310   -0.1612 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.4220    1.0322   -0.5239 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5116   -0.0892   -0.8796 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.1837    1.1089   -0.5045 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8489   -0.5297    0.3224 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0005    0.1192    1.7138 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5922    0.2572    2.2386 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8669    0.7231    0.9748 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1721    2.1307    0.7615 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4902   -0.2739   -0.0156 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9662    0.0593   -1.3379 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5438   -0.1971   -1.3519 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3018    0.4059   -0.2464 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6536    1.8145   -0.6389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5867    0.3765    1.0925 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3204    1.0787    2.1677 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7087    0.5289    2.3076 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3850    0.4135    0.9904 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8473    0.0358    1.0764 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1331   -1.2058    1.8315 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5029    1.1760    1.8743 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.9895    1.1860    1.7430 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.5049    1.1375    0.3502 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.8511    0.0653   -0.4764 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.1436    0.4373   -1.9417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5240   -1.2511   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3831    0.0692   -0.3188 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7343   -1.0260   -1.1237 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2807   -0.6339   -1.2963 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5893   -0.4059    0.0015 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2486   -1.7744    0.5454 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8502    1.7769    0.0931 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3995    1.8797   -1.0372 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9720    1.3645   -1.6176 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8616   -0.3666    0.3040 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6362   -0.7557   -2.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0091   -2.1087   -1.4009 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5893   -1.8645   -3.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0931   -0.2475   -2.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7240   -2.9230   -1.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6206   -2.1445   -3.2115 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7814   -1.3371    0.7363 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8801   -2.5552   -0.6347 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4353    0.1540    0.9482 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8776    1.8901   -0.5295 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3935   -0.0669   -1.9754 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1155   -0.9208   -0.5036 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1109    1.7697   -1.2586 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0424   -1.6322    0.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5349   -0.5486    2.4251 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5708    1.0452    1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2133   -0.6914    2.6172 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5337    1.0951    2.9618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2457    2.5254   -0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4067    2.7515    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1342    2.4183    1.2798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9128   -1.2349    0.2472 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0815    1.0995   -1.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3289   -0.5713   -2.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6743   -1.2807   -1.5029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9032    0.2577   -2.3244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8528    2.1992   -1.3407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7098    2.5330    0.1704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5805    1.9121   -1.2376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5844   -0.7138    1.4047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3446    2.1648    2.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7874    0.8289    3.1354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6880   -0.3535    2.9371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2802    1.3069    2.8984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4003    1.4635    0.5618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5072   -1.2333    2.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1008   -2.1405    1.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1883   -1.1194    2.2288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1067    2.1235    1.5018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2949    1.0194    2.9749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3255    2.1739    2.1787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4996    0.4292    2.4079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3679    2.1206   -0.1451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5916    0.9434    0.3840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3060   -0.4623   -2.5504 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0801    1.0402   -2.0014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3301    1.0823   -2.3050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0713   -1.2137    0.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8747   -2.1257   -0.3273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3585   -1.4223   -0.9842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0062    1.0360   -0.7731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8783   -2.0311   -0.7348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1842   -0.9550   -2.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7974   -1.5297   -1.7896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2153    0.1619   -2.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2888   -2.1861    0.1989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0112   -2.5303    0.1831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2642   -1.8488    1.6312 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
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 16 17  1  6  0  0  0
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 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
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 23 16  1  0  0  0  0
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  1 40  1  0  0  0  0
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  1 42  1  0  0  0  0
  2 43  1  1  0  0  0
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  8 51  1  0  0  0  0
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M  END

     RDKit          3D

101105  0  0  0  0  0  0  0  0999 V2000
    4.2831    1.3032   -0.7196 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0473   -0.1392   -0.4732 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3828   -1.0384   -1.5985 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7233   -1.1884   -2.1473 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8479   -1.7681   -1.4332 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9581   -1.7567   -2.3656 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4068   -1.3156   -0.1709 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.4391   -2.2853    0.2184 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1891   -0.0310   -0.1612 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.4220    1.0322   -0.5239 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5116   -0.0892   -0.8796 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1837    1.1089   -0.5045 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8489   -0.5297    0.3224 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0005    0.1192    1.7138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5922    0.2572    2.2386 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.5240   -1.2511   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5893   -0.4059    0.0015 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652307012117483D          

101105  0  0  0  0            999 V2000
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 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  6  0  0  0
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 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  1  0  0  0
 18 13  1  0  0  0  0
 38 21  1  0  0  0  0
 23 16  1  0  0  0  0
 38 26  1  0  0  0  0
 35 27  1  0  0  0  0
  1 40  1  0  0  0  0
  1 41  1  0  0  0  0
  1 42  1  0  0  0  0
  2 43  1  1  0  0  0
  3 44  1  0  0  0  0
  3 45  1  0  0  0  0
  4 46  1  0  0  0  0
  4 47  1  0  0  0  0
  5 48  1  1  0  0  0
  6 49  1  0  0  0  0
  7 50  1  1  0  0  0
  8 51  1  0  0  0  0
  9 52  1  1  0  0  0
 10 53  1  0  0  0  0
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 37 97  1  0  0  0  0
 37 98  1  0  0  0  0
 39 99  1  0  0  0  0
 39100  1  0  0  0  0
 39101  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003794

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@@]([H])(O[H])[C@]([H])(O[H])[C@]([H])(O[H])C([H])([H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2(C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@]1(C([H])([H])[H])[C@]2([H])C([H])([H])C([H])([H])[C@]2([H])[C@@]3(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C(C([H])([H])[H])(C([H])([H])[H])[C@]3([H])C([H])([H])C([H])([H])[C@@]12C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C35H62O4/c1-22(9-10-25(37)30(39)26(38)21-36)23-13-18-32(4)24(23)14-19-34(6)28(32)11-12-29-33(5)17-8-16-31(2,3)27(33)15-20-35(29,34)7/h22-30,36-39H,8-21H2,1-7H3/t22-,23-,24+,25-,26-,27+,28-,29-,30-,32+,33+,34-,35-/m1/s1

> <INCHI_KEY>
JMKBTQYGOKJMBJ-YONLIQCJSA-N

> <FORMULA>
C35H62O4

> <MOLECULAR_WEIGHT>
546.877

> <EXACT_MASS>
546.464810476

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
101

> <JCHEM_AVERAGE_POLARIZABILITY>
67.18588619798862

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4R,7R)-7-[(1R,2R,5S,6R,9S,10R,13R,14S,19S)-1,2,9,14,18,18-hexamethylpentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicosan-6-yl]octane-1,2,3,4-tetrol

> <ALOGPS_LOGP>
5.86

> <JCHEM_LOGP>
6.587957246333332

> <ALOGPS_LOGS>
-5.95

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.113699654948057

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.914407126687436

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9741465162931267

> <JCHEM_POLAR_SURFACE_AREA>
80.92

> <JCHEM_REFRACTIVITY>
158.63350000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.14e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4R,7R)-7-[(1R,2R,5S,6R,9S,10R,13R,14S,19S)-1,2,9,14,18,18-hexamethylpentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicosan-6-yl]octane-1,2,3,4-tetrol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

101105  0  0  0  0  0  0  0  0999 V2000
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  2  3  1  0
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 15 61  1  0
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 37 97  1  0
 37 98  1  0
 39 99  1  0
 39100  1  0
 39101  1  0
M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0       4.283   1.303  -0.720  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.047  -0.139  -0.473  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.383  -1.038  -1.599  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.723  -1.188  -2.147  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.848  -1.768  -1.433  0.00  0.00           C+0
HETATM    6  O   UNK     0       7.958  -1.757  -2.366  0.00  0.00           O+0
HETATM    7  C   UNK     0       7.407  -1.316  -0.171  0.00  0.00           C+0
HETATM    8  O   UNK     0       8.439  -2.285   0.218  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.189  -0.031  -0.161  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.422   1.032  -0.524  0.00  0.00           O+0
HETATM   11  C   UNK     0       9.512  -0.089  -0.880  0.00  0.00           C+0
HETATM   12  O   UNK     0      10.184   1.109  -0.504  0.00  0.00           O+0
HETATM   13  C   UNK     0       2.849  -0.530   0.322  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.001   0.119   1.714  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.592   0.257   2.239  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.867   0.723   0.975  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.172   2.131   0.762  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.490  -0.274  -0.016  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.966   0.059  -1.338  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.544  -0.197  -1.352  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.302   0.406  -0.246  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.654   1.815  -0.639  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.587   0.377   1.093  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.320   1.079   2.168  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.709   0.529   2.308  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.385   0.414   0.990  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.847   0.036   1.076  0.00  0.00           C+0
HETATM   28  C   UNK     0      -5.133  -1.206   1.831  0.00  0.00           C+0
HETATM   29  C   UNK     0      -5.503   1.176   1.874  0.00  0.00           C+0
HETATM   30  C   UNK     0      -6.989   1.186   1.743  0.00  0.00           C+0
HETATM   31  C   UNK     0      -7.505   1.137   0.350  0.00  0.00           C+0
HETATM   32  C   UNK     0      -6.851   0.065  -0.476  0.00  0.00           C+0
HETATM   33  C   UNK     0      -7.144   0.437  -1.942  0.00  0.00           C+0
HETATM   34  C   UNK     0      -7.524  -1.251  -0.240  0.00  0.00           C+0
HETATM   35  C   UNK     0      -5.383   0.069  -0.319  0.00  0.00           C+0
HETATM   36  C   UNK     0      -4.734  -1.026  -1.124  0.00  0.00           C+0
HETATM   37  C   UNK     0      -3.281  -0.634  -1.296  0.00  0.00           C+0
HETATM   38  C   UNK     0      -2.589  -0.406   0.002  0.00  0.00           C+0
HETATM   39  C   UNK     0      -2.249  -1.774   0.545  0.00  0.00           C+0
HETATM   40  H   UNK     0       4.850   1.777   0.093  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.400   1.880  -1.037  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.972   1.365  -1.618  0.00  0.00           H+0
HETATM   43  H   UNK     0       4.862  -0.367   0.304  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.636  -0.756  -2.432  0.00  0.00           H+0
HETATM   45  H   UNK     0       4.009  -2.109  -1.401  0.00  0.00           H+0
HETATM   46  H   UNK     0       5.589  -1.865  -3.078  0.00  0.00           H+0
HETATM   47  H   UNK     0       6.093  -0.248  -2.680  0.00  0.00           H+0
HETATM   48  H   UNK     0       6.724  -2.923  -1.326  0.00  0.00           H+0
HETATM   49  H   UNK     0       7.621  -2.144  -3.212  0.00  0.00           H+0
HETATM   50  H   UNK     0       6.781  -1.337   0.736  0.00  0.00           H+0
HETATM   51  H   UNK     0       8.880  -2.555  -0.635  0.00  0.00           H+0
HETATM   52  H   UNK     0       8.435   0.154   0.948  0.00  0.00           H+0
HETATM   53  H   UNK     0       7.878   1.890  -0.530  0.00  0.00           H+0
HETATM   54  H   UNK     0       9.393  -0.067  -1.975  0.00  0.00           H+0
HETATM   55  H   UNK     0      10.116  -0.921  -0.504  0.00  0.00           H+0
HETATM   56  H   UNK     0      10.111   1.770  -1.259  0.00  0.00           H+0
HETATM   57  H   UNK     0       3.042  -1.632   0.533  0.00  0.00           H+0
HETATM   58  H   UNK     0       3.535  -0.549   2.425  0.00  0.00           H+0
HETATM   59  H   UNK     0       3.571   1.045   1.676  0.00  0.00           H+0
HETATM   60  H   UNK     0       1.213  -0.691   2.617  0.00  0.00           H+0
HETATM   61  H   UNK     0       1.534   1.095   2.962  0.00  0.00           H+0
HETATM   62  H   UNK     0       1.246   2.525  -0.245  0.00  0.00           H+0
HETATM   63  H   UNK     0       0.407   2.752   1.278  0.00  0.00           H+0
HETATM   64  H   UNK     0       2.134   2.418   1.280  0.00  0.00           H+0
HETATM   65  H   UNK     0       0.913  -1.235   0.247  0.00  0.00           H+0
HETATM   66  H   UNK     0       1.081   1.099  -1.682  0.00  0.00           H+0
HETATM   67  H   UNK     0       1.329  -0.571  -2.188  0.00  0.00           H+0
HETATM   68  H   UNK     0      -0.674  -1.281  -1.503  0.00  0.00           H+0
HETATM   69  H   UNK     0      -0.903   0.258  -2.324  0.00  0.00           H+0
HETATM   70  H   UNK     0      -0.853   2.199  -1.341  0.00  0.00           H+0
HETATM   71  H   UNK     0      -1.710   2.533   0.170  0.00  0.00           H+0
HETATM   72  H   UNK     0      -2.580   1.912  -1.238  0.00  0.00           H+0
HETATM   73  H   UNK     0      -0.584  -0.714   1.405  0.00  0.00           H+0
HETATM   74  H   UNK     0      -1.345   2.165   2.133  0.00  0.00           H+0
HETATM   75  H   UNK     0      -0.787   0.829   3.135  0.00  0.00           H+0
HETATM   76  H   UNK     0      -2.688  -0.354   2.937  0.00  0.00           H+0
HETATM   77  H   UNK     0      -3.280   1.307   2.898  0.00  0.00           H+0
HETATM   78  H   UNK     0      -3.400   1.464   0.562  0.00  0.00           H+0
HETATM   79  H   UNK     0      -4.507  -1.233   2.745  0.00  0.00           H+0
HETATM   80  H   UNK     0      -5.101  -2.140   1.286  0.00  0.00           H+0
HETATM   81  H   UNK     0      -6.188  -1.119   2.229  0.00  0.00           H+0
HETATM   82  H   UNK     0      -5.107   2.123   1.502  0.00  0.00           H+0
HETATM   83  H   UNK     0      -5.295   1.019   2.975  0.00  0.00           H+0
HETATM   84  H   UNK     0      -7.325   2.174   2.179  0.00  0.00           H+0
HETATM   85  H   UNK     0      -7.500   0.429   2.408  0.00  0.00           H+0
HETATM   86  H   UNK     0      -7.368   2.121  -0.145  0.00  0.00           H+0
HETATM   87  H   UNK     0      -8.592   0.943   0.384  0.00  0.00           H+0
HETATM   88  H   UNK     0      -7.306  -0.462  -2.550  0.00  0.00           H+0
HETATM   89  H   UNK     0      -8.080   1.040  -2.001  0.00  0.00           H+0
HETATM   90  H   UNK     0      -6.330   1.082  -2.305  0.00  0.00           H+0
HETATM   91  H   UNK     0      -8.071  -1.214   0.748  0.00  0.00           H+0
HETATM   92  H   UNK     0      -6.875  -2.126  -0.327  0.00  0.00           H+0
HETATM   93  H   UNK     0      -8.358  -1.422  -0.984  0.00  0.00           H+0
HETATM   94  H   UNK     0      -5.006   1.036  -0.773  0.00  0.00           H+0
HETATM   95  H   UNK     0      -4.878  -2.031  -0.735  0.00  0.00           H+0
HETATM   96  H   UNK     0      -5.184  -0.955  -2.156  0.00  0.00           H+0
HETATM   97  H   UNK     0      -2.797  -1.530  -1.790  0.00  0.00           H+0
HETATM   98  H   UNK     0      -3.215   0.162  -2.036  0.00  0.00           H+0
HETATM   99  H   UNK     0      -1.289  -2.186   0.199  0.00  0.00           H+0
HETATM  100  H   UNK     0      -3.011  -2.530   0.183  0.00  0.00           H+0
HETATM  101  H   UNK     0      -2.264  -1.849   1.631  0.00  0.00           H+0
CONECT    1    2   40   41   42                                             
CONECT    2    1    3   13   43                                             
CONECT    3    2    4   44   45                                             
CONECT    4    3    5   46   47                                             
CONECT    5    4    6    7   48                                             
CONECT    6    5   49                                                       
CONECT    7    5    8    9   50                                             
CONECT    8    7   51                                                       
CONECT    9    7   10   11   52                                             
CONECT   10    9   53                                                       
CONECT   11    9   12   54   55                                             
CONECT   12   11   56                                                       
CONECT   13    2   14   18   57                                             
CONECT   14   13   15   58   59                                             
CONECT   15   14   16   60   61                                             
CONECT   16   15   17   18   23                                             
CONECT   17   16   62   63   64                                             
CONECT   18   16   19   13   65                                             
CONECT   19   18   20   66   67                                             
CONECT   20   19   21   68   69                                             
CONECT   21   20   22   23   38                                             
CONECT   22   21   70   71   72                                             
CONECT   23   21   24   16   73                                             
CONECT   24   23   25   74   75                                             
CONECT   25   24   26   76   77                                             
CONECT   26   25   27   38   78                                             
CONECT   27   26   28   29   35                                             
CONECT   28   27   79   80   81                                             
CONECT   29   27   30   82   83                                             
CONECT   30   29   31   84   85                                             
CONECT   31   30   32   86   87                                             
CONECT   32   31   33   34   35                                             
CONECT   33   32   88   89   90                                             
CONECT   34   32   91   92   93                                             
CONECT   35   32   36   27   94                                             
CONECT   36   35   37   95   96                                             
CONECT   37   36   38   97   98                                             
CONECT   38   37   39   21   26                                             
CONECT   39   38   99  100  101                                             
CONECT   40    1                                                            
CONECT   41    1                                                            
CONECT   42    1                                                            
CONECT   43    2                                                            
CONECT   44    3                                                            
CONECT   45    3                                                            
CONECT   46    4                                                            
CONECT   47    4                                                            
CONECT   48    5                                                            
CONECT   49    6                                                            
CONECT   50    7                                                            
CONECT   51    8                                                            
CONECT   52    9                                                            
CONECT   53   10                                                            
CONECT   54   11                                                            
CONECT   55   11                                                            
CONECT   56   12                                                            
CONECT   57   13                                                            
CONECT   58   14                                                            
CONECT   59   14                                                            
CONECT   60   15                                                            
CONECT   61   15                                                            
CONECT   62   17                                                            
CONECT   63   17                                                            
CONECT   64   17                                                            
CONECT   65   18                                                            
CONECT   66   19                                                            
CONECT   67   19                                                            
CONECT   68   20                                                            
CONECT   69   20                                                            
CONECT   70   22                                                            
CONECT   71   22                                                            
CONECT   72   22                                                            
CONECT   73   23                                                            
CONECT   74   24                                                            
CONECT   75   24                                                            
CONECT   76   25                                                            
CONECT   77   25                                                            
CONECT   78   26                                                            
CONECT   79   28                                                            
CONECT   80   28                                                            
CONECT   81   28                                                            
CONECT   82   29                                                            
CONECT   83   29                                                            
CONECT   84   30                                                            
CONECT   85   30                                                            
CONECT   86   31                                                            
CONECT   87   31                                                            
CONECT   88   33                                                            
CONECT   89   33                                                            
CONECT   90   33                                                            
CONECT   91   34                                                            
CONECT   92   34                                                            
CONECT   93   34                                                            
CONECT   94   35                                                            
CONECT   95   36                                                            
CONECT   96   36                                                            
CONECT   97   37                                                            
CONECT   98   37                                                            
CONECT   99   39                                                            
CONECT  100   39                                                            
CONECT  101   39                                                            
MASTER        0    0    0    0    0    0    0    0  101    0  210    0
END

RDKit          3D

101105  0  0  0  0  0  0  0  0999 V2000
    4.2831    1.3032   -0.7196 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0473   -0.1392   -0.4732 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3828   -1.0384   -1.5985 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7233   -1.1884   -2.1473 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8479   -1.7681   -1.4332 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9581   -1.7567   -2.3656 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4068   -1.3156   -0.1709 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.4391   -2.2853    0.2184 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1891   -0.0310   -0.1612 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.4220    1.0322   -0.5239 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5116   -0.0892   -0.8796 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1837    1.1089   -0.5045 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8489   -0.5297    0.3224 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0005    0.1192    1.7138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5922    0.2572    2.2386 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8669    0.7231    0.9748 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1721    2.1307    0.7615 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4902   -0.2739   -0.0156 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9662    0.0593   -1.3379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5438   -0.1971   -1.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3018    0.4059   -0.2464 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6536    1.8145   -0.6389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5867    0.3765    1.0925 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3204    1.0787    2.1677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7087    0.5289    2.3076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3850    0.4135    0.9904 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8473    0.0358    1.0764 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1331   -1.2058    1.8315 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5029    1.1760    1.8743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9895    1.1860    1.7430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5049    1.1375    0.3502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8511    0.0653   -0.4764 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.1436    0.4373   -1.9417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5240   -1.2511   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3831    0.0692   -0.3188 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7343   -1.0260   -1.1237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2807   -0.6339   -1.2963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5893   -0.4059    0.0015 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2486   -1.7744    0.5454 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8502    1.7769    0.0931 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3995    1.8797   -1.0372 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9720    1.3645   -1.6176 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8616   -0.3666    0.3040 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6362   -0.7557   -2.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0091   -2.1087   -1.4009 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5893   -1.8645   -3.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0931   -0.2475   -2.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7240   -2.9230   -1.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6206   -2.1445   -3.2115 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7814   -1.3371    0.7363 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8801   -2.5552   -0.6347 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4353    0.1540    0.9482 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8776    1.8901   -0.5295 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3935   -0.0669   -1.9754 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1155   -0.9208   -0.5036 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1109    1.7697   -1.2586 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0424   -1.6322    0.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5349   -0.5486    2.4251 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5708    1.0452    1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2133   -0.6914    2.6172 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5337    1.0951    2.9618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2457    2.5254   -0.2447 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4067    2.7515    1.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1342    2.4183    1.2798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9128   -1.2349    0.2472 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₅H₆₂O₄

Average Mass

546.8770 Da

Monoisotopic Mass

546.46481 Da

IUPAC Name

(2R,3R,4R,7R)-7-[(1R,2R,5S,6R,9S,10R,13R,14S,19S)-1,2,9,14,18,18-hexamethylpentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicosan-6-yl]octane-1,2,3,4-tetrol

Traditional Name

(2R,3R,4R,7R)-7-[(1R,2R,5S,6R,9S,10R,13R,14S,19S)-1,2,9,14,18,18-hexamethylpentacyclo[11.8.0.0^{2,10}.0^{5,9}.0^{14,19}]henicosan-6-yl]octane-1,2,3,4-tetrol

CAS Registry Number

Not Available

SMILES

C[C@H](CC[C@@H](O)[C@@H](O)[C@H](O)CO)[C@H]1CC[C@@]2(C)[C@H]1CC[C@]1(C)[C@@H]2CC[C@@H]2[C@@]3(C)CCCC(C)(C)[C@@H]3CC[C@@]12C

InChI Identifier

InChI=1S/C35H62O4/c1-22(9-10-25(37)30(39)26(38)21-36)23-13-18-32(4)24(23)14-19-34(6)28(32)11-12-29-33(5)17-8-16-31(2,3)27(33)15-20-35(29,34)7/h22-30,36-39H,8-21H2,1-7H3/t22-,23-,24+,25-,26-,27+,28-,29-,30-,32+,33+,34-,35-/m1/s1

InChI Key

JMKBTQYGOKJMBJ-YONLIQCJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Frankia sp.	NPAtlas	11488925

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.86	ALOGPS
logP	6.59	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Acidic)	12.91	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	80.92 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	158.63 m³·mol⁻¹	ChemAxon
Polarizability	67.19 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA019957

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78438671

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139588636

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Rosa-Putra S, Nalin R, Domenach AM, Rohmer M: Novel hopanoids from Frankia spp. and related soil bacteria. Squalene cyclization and significance of geological biomarkers revisited. Eur J Biochem. 2001 Aug;268(15):4300-6. doi: 10.1046/j.1432-1327.2001.02348.x. [PubMed:11488925 ]

Showing NP-Card for Ab-bis-homopanol (NP0003794)

MOL for NP0003794 (Ab-bis-homopanol)

3D MOL for NP0003794 (Ab-bis-homopanol)

3D SDF for NP0003794 (Ab-bis-homopanol)

3D-SDF for NP0003794 (Ab-bis-homopanol)

PDB for NP0003794 (Ab-bis-homopanol)

3D PDB for NP0003794 (Ab-bis-homopanol)

SMILES for NP0003794 (Ab-bis-homopanol)

INCHI for NP0003794 (Ab-bis-homopanol)

Structure for NP0003794 (Ab-bis-homopanol)

3D Structure for NP0003794 (Ab-bis-homopanol)