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Record Information
Version1.0
Created at2020-12-09 00:56:00 UTC
Updated at2021-08-19 23:59:34 UTC
NP-MRD IDNP0003774
Secondary Accession NumbersNone
Natural Product Identification
Common NameEmodin
Provided ByNPAtlasNPAtlas Logo
DescriptionEmodin, also known as schuttgelb or archin, belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group. Thus, emodin is considered to be an aromatic polyketide. Emodin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Emodin is found in Achyranthes bidentata, Aloe castellorum, Aloe vera, Asahinea chrysantha, Aspergillus aureoterreus, Aspergillus wentii, Canariomyces subthermophilus, Cascara sagrada, Cassia angustifolia , Cassia fistula, Chamaecrista nigricans, Cassia roxburghii, Catalpa longissima, Cortinarius basirubescens, Cortinarius sanguineus, Cratoxylum formosum, Dendrobium thyrsiflorum, Eriococcus coriaceus, Fagopyrum esculentum, Fagopyrum tataricum, Fallopia multiflora, Flavocetraria cucullata, Frangula alnus, Fulgensia canariensis, Hamigera avellanea, Heterodermia obscurata, Isatis tinctoria, Juniperus formosana, Larix kaempferi, Ligularia pleurocaulis, Monilinia fructicola, Monodictys sp., Nephroma laevigatum, Neurospora micropertusa, Osmanthus armatus, Penicillium restrictum, Persicaria hydropiper, Persicaria perfoliata, Picramnia hirsuta, Picramnia teapensis, Ploiarium alternifolium, Polygonum amplexicaule, Fallopia sachalinensis, Psorospermum tenuifolium, Pyrenophora catenaria, Rhamnus cathartica, Rhamnus formosana, Rhamnus kurdica, Rhamnus libanoticus, Rhamnus pallasii, Rhamnus prinoides , Rhamnus procumbens , Rhamnus saxatilis, Rhamnus triquetra, Rhamnus wightii , Rheum emodi , Rheum franzenbachii, Rheum racemiferum, Rheum rhaponticum, Rumex abyssinicus, Rumex acetosella , Rumex alpinus, Rumex aquaticus , Rumex chalepensis, Rumex confertus , Rumex cristatus, Rumex cyprius, Rumex hydrolapathum, Rumex libanoticus, Rumex obtusifolius , Rumex pulcher, Rumex scutatus , Saururus chinensis, Senna artemisioides, Senna lindheimeriana, Senna macranthera, Senna siamea, Senna spectabilis, Setophoma terrestris, Simaba orinocensis, Talaromyces brunneus, Talaromyces stipitatus, Tribulus terrestris , Trichoderma polysporum, Trichoderma viride, Ventilago denticulata, Ventilago madraspatana, Vismia guineensis and Xanthoria parietina. It was first documented in 1975 (PMID: 1147616). Based on a literature review a significant number of articles have been published on Emodin (PMID: 15942676) (PMID: 19177021) (PMID: 3019234) (PMID: 18387517).
Structure
Data?1624573901
Synonyms
ValueSource
1,3,8-Trihydroxy-6-methyl-9,10-anthracenedioneChEBI
1,3,8-Trihydroxy-6-methyl-9,10-anthraquinoneChEBI
3-METHYL-1,6,8-trihydroxyanthraquinoneChEBI
SchuttgelbChEBI
1,3, 8-Trihydroxy-6-methyl-9,10-anthraquinoneHMDB
1,3,8-Trihydroxy-6-methyl-9,10-anthracenedione, 9ciHMDB
1,3,8-Trihydroxy-6-methylanthra-9,10-quinoneHMDB
4,5,7-Trihydroxy-2-methylanthraquinoneHMDB
6-Methyl-1,3,8-trihydroxy-9,10-anthracenedioneHMDB
6-Methyl-1,3,8-trihydroxyanthraquinoneHMDB
9,10-Anthracenedione, 1,3,8-trihydroxy-6-methyl- (9ci)HMDB
ArchinHMDB
EmodolHMDB
Frangula emodinHMDB
Frangulic acidHMDB
Frangulinic acidHMDB
Rheum-emodinHMDB
Emodin, rheumHMDB
Emodin, frangulaHMDB
Rheum emodinHMDB
PeristimMeSH
CasanthranolMeSH
Chemical FormulaC15H10O5
Average Mass270.2369 Da
Monoisotopic Mass270.05282 Da
IUPAC Name1,3,8-trihydroxy-6-methyl-9,10-dihydroanthracene-9,10-dione
Traditional Nameemodin
CAS Registry NumberNot Available
SMILES
CC1=CC(O)=C2C(=O)C3=C(O)C=C(O)C=C3C(=O)C2=C1
InChI Identifier
InChI=1S/C15H10O5/c1-6-2-8-12(10(17)3-6)15(20)13-9(14(8)19)4-7(16)5-11(13)18/h2-5,16-18H,1H3
InChI KeyRHMXXJGYXNZAPX-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Achyranthes bidentataLOTUS Database
Aframomum giganteumKNApSAcK Database
Aloe castellorumLOTUS Database
Aloe veraLOTUS Database
Artemisia scopariaKNApSAcK Database
Asahinea chrysanthaLOTUS Database
Aspergillus aureoterreusLOTUS Database
Aspergillus wentiiNPAtlas
Boehmeria platanifoliaKNApSAcK Database
Canariomyces subthermophilusLOTUS Database
Cascara sagrada-
Cassia alata L.KNApSAcK Database
Cassia angolensisKNApSAcK Database
Cassia angustifoliaPlant
Cassia fastuosaKNApSAcK Database
Cassia fistulaLOTUS Database
Cassia javanicaKNApSAcK Database
Cassia nigricansLOTUS Database
Cassia obtusifoliaKNApSAcK Database
Cassia occidentalisKNApSAcK Database
Cassia roxburghiiPlant
Cassia speciosaKNApSAcK Database
Cassia tora L.KNApSAcK Database
Cassia torosa L.KNApSAcK Database
Catalpa longissimaLOTUS Database
Chamaecrista mimosoidesKNApSAcK Database
Chamaecrista nomameKNApSAcK Database
Chamaecrista pumilaKNApSAcK Database
Cortinarius basirubescensLOTUS Database
Cortinarius sanguineusLOTUS Database
Cratoxylum formosumLOTUS Database
Dendrobium thyrsiflorumLOTUS Database
Derris oblongaKNApSAcK Database
Epimedium koreanumKNApSAcK Database
Eriocaulon buergerianumKNApSAcK Database
Eriococcus coriaceusLOTUS Database
Fagopyrum esculentumLOTUS Database
Fagopyrum tataricumLOTUS Database
Fallopia multifloraLOTUS Database
Flavocetraria cucullataLOTUS Database
Frangula alnusLOTUS Database
Fulgensia canariensisLOTUS Database
Hamigera avellaneaLOTUS Database
Heterodermia obscurataLOTUS Database
Hypericum sampsoniiKNApSAcK Database
Isatis tinctoriaLOTUS Database
Juniperus formosanaLOTUS Database
Larix kaempferiLOTUS Database
Ligularia pleurocaulisLOTUS Database
Lilium brownii var.viridulumKNApSAcK Database
Monilinia fructicolaLOTUS Database
Monodictys sp.-
Muehlenbeckia tamnifoliaKNApSAcK Database
Myrsine africanaKNApSAcK Database
Nephroma laevigatumLOTUS Database
Neurospora micropertusaLOTUS Database
Osmanthus armatusLOTUS Database
Penicillium restrictumLOTUS Database
Persicaria hydropiperLOTUS Database
Persicaria perfoliataLOTUS Database
Picramnia antidesmaKNApSAcK Database
Picramnia hirsutaLOTUS Database
Picramnia teapensisLOTUS Database
Picramnia teapensis Tul.KNApSAcK Database
Ploiarium alternifoliumLOTUS Database
Polygonum amplexicaulePlant
Polygonum cuspidatumKNApSAcK Database
Polygonum multiflorumKNApSAcK Database
Polygonum perfoliatumKNApSAcK Database
Polygonum sachalinenseLOTUS Database
Psorospermum glaberrimumKNApSAcK Database
Psorospermum tenuifoliumLOTUS Database
Pyrenophora catenariaLOTUS Database
Rhamnus catharticaLOTUS Database
Rhamnus davuricaKNApSAcK Database
Rhamnus formosanaLOTUS Database
Rhamnus frangulaKNApSAcK Database
Rhamnus kurdicaLOTUS Database
Rhamnus libanoticusPlant
Rhamnus nepalensisKNApSAcK Database
Rhamnus pallasiiLOTUS Database
Rhamnus prinoidesPlant
Rhamnus procumbensPlant
Rhamnus saxatilisLOTUS Database
Rhamnus triquetraLOTUS Database
Rhamnus wightiiPlant
Rheum australePlant
Rheum emodiKNApSAcK Database
Rheum franzenbachiiLOTUS Database
Rheum officinaleKNApSAcK Database
Rheum palmatumKNApSAcK Database
Rheum racemiferumLOTUS Database
Rheum rhabarbarumFooDB
Rheum rhaponticumLOTUS Database
Rheum spp.KNApSAcK Database
Rheum tanguticumKNApSAcK Database
Rheum wittrockiKNApSAcK Database
RumexFooDB
Rumex abyssinicusLOTUS Database
Rumex acetosaKNApSAcK Database
Rumex acetosellaPlant
Rumex alpinusLOTUS Database
Rumex aquaticusPlant
Rumex chalepensisLOTUS Database
Rumex confertusPlant
Rumex crispusKNApSAcK Database
Rumex cristatusLOTUS Database
Rumex cypriusLOTUS Database
Rumex dentatusKNApSAcK Database
Rumex hydrolapathumPlant
Rumex japonicusKNApSAcK Database
Rumex libanoticusPlant
Rumex nepalensisKNApSAcK Database
Rumex obtusifoliusPlant
Rumex patientiaKNApSAcK Database
Rumex pulcherLOTUS Database
Rumex scutatusPlant
Rumex spp.KNApSAcK Database
Sargentodoxa cuneataKNApSAcK Database
Saururus chinensisLOTUS Database
Senna alataKNApSAcK Database
Senna alexandrinaKNApSAcK Database
Senna angustisiliquaKNApSAcK Database
Senna artemisioidesLOTUS Database
Senna auriculataKNApSAcK Database
Senna didymobotryaKNApSAcK Database
Senna lindheimerianaLOTUS Database
Senna macrantheraLOTUS Database
Senna obtusifoliaKNApSAcK Database
Senna occidentalisKNApSAcK Database
Senna podocarpaKNApSAcK Database
Senna septemtrionalisKNApSAcK Database
Senna siameaLOTUS Database
Senna sopheraKNApSAcK Database
Senna spectabilisLOTUS Database
Senna toraKNApSAcK Database
Setophoma terrestrisLOTUS Database
Simaba orinocensisLOTUS Database
Talaromyces brunneusLOTUS Database
Talaromyces stipitatusLOTUS Database
Tribulus terrestrisPlant
Trichoderma polysporumLOTUS Database
Trichoderma virideLOTUS Database
Vatairea heteropteraKNApSAcK Database
Ventilago calyculataKNApSAcK Database
Ventilago denticulataLOTUS Database
Ventilago leiocarpaKNApSAcK Database
Ventilago maderaspatanaLOTUS Database
Vismia guineensisLOTUS Database
Vismia laurentiiKNApSAcK Database
Vismia orientalisKNApSAcK Database
Xanthoria parietinaLOTUS Database
Species Where Detected
Species NameSourceReference
Aspergillus terreus IMI16043KNApSAcK Database
Guanomyces polythrixKNApSAcK Database
Pyrenochaeta terrestrisKNApSAcK Database
Thielavia subthermophilaKNApSAcK Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group.
KingdomOrganic compounds
Super ClassBenzenoids
ClassAnthracenes
Sub ClassAnthraquinones
Direct ParentHydroxyanthraquinones
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting Point257.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Boiling Point586.87 °C. @ 760.00 mm Hg (est)The Good Scents Company Information System
Water Solubility2.04 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP3.641 (est)The Good Scents Company Information System
Predicted Properties
PropertyValueSource
logP2.66ALOGPS
logP3.82ChemAxon
logS-3.1ALOGPS
pKa (Strongest Acidic)7.29ChemAxon
pKa (Strongest Basic)-5.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area94.83 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity72.13 m³·mol⁻¹ChemAxon
Polarizability26.58 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA020090
HMDB IDHMDB0035214
DrugBank IDDB07715
Phenol Explorer Compound IDNot Available
FoodDB IDFDB013862
KNApSAcK IDC00000555
Chemspider ID3107
KEGG Compound IDC10343
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkEmodin
METLIN IDNot Available
PubChem Compound3220
PDB IDNot Available
ChEBI ID42223
Good Scents IDrw1242531
References
General References
  1. Wells JM, Cole RJ, Kirksey JW: Emodin, a toxic metabolite of Aspergillus wentii isolated from weevil-damaged chestnuts. Appl Microbiol. 1975 Jul;30(1):26-8. [PubMed:1147616 ]
  2. Li HL, Chen HL, Li H, Zhang KL, Chen XY, Wang XW, Kong QY, Liu J: Regulatory effects of emodin on NF-kappaB activation and inflammatory cytokine expression in RAW 264.7 macrophages. Int J Mol Med. 2005 Jul;16(1):41-7. [PubMed:15942676 ]
  3. Sandholt IS, Olsen BB, Guerra B, Issinger OG: Resorufin: a lead for a new protein kinase CK2 inhibitor. Anticancer Drugs. 2009 Apr;20(4):238-48. doi: 10.1097/CAD.0b013e328326472e. [PubMed:19177021 ]
  4. Ubbink-Kok T, Anderson JA, Konings WN: Inhibition of electron transfer and uncoupling effects by emodin and emodinanthrone in Escherichia coli. Antimicrob Agents Chemother. 1986 Jul;30(1):147-51. doi: 10.1128/AAC.30.1.147. [PubMed:3019234 ]
  5. Lee SU, Shin HK, Min YK, Kim SH: Emodin accelerates osteoblast differentiation through phosphatidylinositol 3-kinase activation and bone morphogenetic protein-2 gene expression. Int Immunopharmacol. 2008 May;8(5):741-7. doi: 10.1016/j.intimp.2008.01.027. Epub 2008 Feb 22. [PubMed:18387517 ]