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Record Information
Version1.0
Created at2020-12-09 00:53:59 UTC
Updated at2021-07-15 16:47:13 UTC
NP-MRD IDNP0003730
Secondary Accession NumbersNone
Natural Product Identification
Common NameLomaiviticin A
Provided ByNPAtlasNPAtlas Logo
Description Lomaiviticin A is found in Micromonospora. It was first documented in 2001 (PMID: 11457405). Based on a literature review very few articles have been published on (1R,2S,3R)-11-(diazyn-1-ium-1-yl)-3-[(1R,2S,3R)-11-(diazyn-1-ium-1-yl)-1-{[5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-2-[(5-hydroxy-4-methoxy-6-methyloxan-2-yl)oxy]-6-oxido-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-3-yl]-1-{[(2S,5S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-2-[(5-hydroxy-4-methoxy-6-methyloxan-2-yl)oxy]-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-6-olate.
Structure
Thumb
Synonyms
ValueSource
(1R,2S,3R)-11-(Diazyn-1-ium-1-yl)-3-[(1R,2S,3R)-11-(diazyn-1-ium-1-yl)-1-{[5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-2-[(5-hydroxy-4-methoxy-6-methyloxan-2-yl)oxy]-6-oxido-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-3-yl]-1-{[(2S,5S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-2-[(5-hydroxy-4-methoxy-6-methyloxan-2-yl)oxy]-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-6-olic acidGenerator
Chemical FormulaC68H80N6O24
Average Mass1365.4060 Da
Monoisotopic Mass1364.52240 Da
IUPAC Name(1R,2S)-1-{[(2S,4R,5R,6R)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S)-1-{[(2S,4S,5S,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-2-{[(2R,4R,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-11-(-lambda4,-lambda2-diazynylidene)-4,6,9-trioxo-1H,2H,3H,4H,6H,9H,11H-cyclohexa[b]fluoren-3-yl]-2-ethyl-5,10-dihydroxy-2-{[(2R,4R,5S,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-11-(-lambda4,-lambda2-diazynylidene)-1H,2H,3H,4H,6H,9H,11H-cyclohexa[b]fluorene-4,6,9-trione
Traditional Name(1R,2S)-1-{[(2S,4R,5R,6R)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S)-1-{[(2S,4S,5S,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-2-{[(2R,4R,5R,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-11-(-lambda4,-lambda2-diazynylidene)-4,6,9-trioxo-1H,3H-cyclohexa[b]fluoren-3-yl]-2-ethyl-5,10-dihydroxy-2-{[(2R,4R,5S,6R)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-11-(-lambda4,-lambda2-diazynylidene)-1H,3H-cyclohexa[b]fluorene-4,6,9-trione
CAS Registry NumberNot Available
SMILES
CC[C@@]1(OC2CC(OC)C(O)C(C)O2)[C@H](OC2CC(O)C(C(C)O2)N(C)C)C2=C(C3=C(C2=[N+]=[N-])C(O)=C2C(=O)C=CC(=O)C2=C3O)C(=O)[C@@H]1[C@H]1C(=O)C2=C([C@@H](O[C@H]3CC(O)[C@@H](C(C)O3)N(C)C)[C@@]1(CC)OC1CC(OC)C(O)C(C)O1)C(=[N+]=[N-])C1=C2C(O)=C2C(=O)C=CC(=O)C2=C1O
InChI Identifier
InChI=1S/C68H80N6O24/c1-13-67(97-37-21-33(89-11)57(81)25(5)93-37)51(63(87)45-43-47(61(85)41-29(77)17-15-27(75)39(41)59(43)83)53(71-69)49(45)65(67)95-35-19-31(79)55(73(7)8)23(3)91-35)52-64(88)46-44-48(62(86)42-30(78)18-16-28(76)40(42)60(44)84)54(72-70)50(46)66(96-36-20-32(80)56(74(9)10)24(4)92-36)68(52,14-2)98-38-22-34(90-12)58(82)26(6)94-38/h15-18,23-26,31-38,51-52,55-58,65-66,79-86H,13-14,19-22H2,1-12H3/t23?,24?,25?,26?,31?,32?,33?,34?,35-,36?,37?,38?,51-,52-,55+,56?,57?,58?,65+,66+,67-,68-/m0/s1
InChI KeyIGTJAVXLXLMFRG-JGBUZTLDSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
MicromonosporaNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.82ALOGPS
logP0.57ChemAxon
logS-2.9ALOGPS
pKa (Strongest Acidic)5.92ChemAxon
pKa (Strongest Basic)8.11ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count28ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area397.18 ŲChemAxon
Rotatable Bond Count15ChemAxon
Refractivity340.98 m³·mol⁻¹ChemAxon
Polarizability137 ųChemAxon
Number of Rings12ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA006818
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445400
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139585023
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. He H, Ding WD, Bernan VS, Richardson AD, Ireland CM, Greenstein M, Ellestad GA, Carter GT: Lomaiviticins A and B, potent antitumor antibiotics from Micromonospora lomaivitiensis. J Am Chem Soc. 2001 Jun 6;123(22):5362-3. doi: 10.1021/ja010129o. [PubMed:11457405 ]