NP-MRD: Showing NP-Card for 2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol (NP0003672)

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Record Information

Version

1.0

Created at

2020-12-09 00:51:40 UTC

Updated at

2021-07-15 16:47:03 UTC

NP-MRD ID

NP0003672

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol

Provided By

NPAtlas

Description

2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol is found in Aspergillus terreus. It was first documented in 2001 (PMID: 11372786). Based on a literature review very few articles have been published on 4,5-bis(hydroxymethyl)-6-methylbenzene-1,2,3-triol (PMID: 34380192) (PMID: 34380191) (PMID: 34380190) (PMID: 34380189).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117493D          

 26 26  0  0  0  0            999 V2000
    2.3930   -0.2812    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1474    0.3027    0.3034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0183    1.6186    0.0065 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0547    2.4945    0.1512 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2084    2.1155   -0.4682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2982    3.4678   -0.7648 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2428    1.2382   -0.6123 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4679    1.7017   -1.0793 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1197   -0.1438   -0.3036 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3775   -0.9033   -0.5139 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4456   -2.1983   -0.2349 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0748   -0.6155    0.1525 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2805   -2.0165    0.5113 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4561   -2.5422   -0.0811 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0892    0.4324    1.2622 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2516   -1.0884    1.5638 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9316   -0.6898   -0.1047 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9526    2.2169    0.4859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5081    4.0477   -0.6290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5824    2.6665   -1.3054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6444   -0.7682   -1.6277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2635   -0.3770   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0370   -2.4860    0.5113 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3306   -2.1938    1.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5318   -2.6299    0.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7307   -3.3687    0.4112 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 12  2  1  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  4 18  1  0  0  0  0
  6 19  1  0  0  0  0
  8 20  1  0  0  0  0
 10 21  1  0  0  0  0
 10 22  1  0  0  0  0
 11 23  1  0  0  0  0
 13 24  1  0  0  0  0
 13 25  1  0  0  0  0
 14 26  1  0  0  0  0
M  END


  Mrv1652306242117493D          

 26 26  0  0  0  0            999 V2000
    2.3930   -0.2812    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1474    0.3027    0.3034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0183    1.6186    0.0065 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0547    2.4945    0.1512 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2084    2.1155   -0.4682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2982    3.4678   -0.7648 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2428    1.2382   -0.6123 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4679    1.7017   -1.0793 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1197   -0.1438   -0.3036 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3775   -0.9033   -0.5139 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4456   -2.1983   -0.2349 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0748   -0.6155    0.1525 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2805   -2.0165    0.5113 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4561   -2.5422   -0.0811 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0892    0.4324    1.2622 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2516   -1.0884    1.5638 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9316   -0.6898   -0.1047 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9526    2.2169    0.4859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5081    4.0477   -0.6290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5824    2.6665   -1.3054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6444   -0.7682   -1.6277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2635   -0.3770   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0370   -2.4860    0.5113 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3306   -2.1938    1.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5318   -2.6299    0.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7307   -3.3687    0.4112 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 12  2  1  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  4 18  1  0  0  0  0
  6 19  1  0  0  0  0
  8 20  1  0  0  0  0
 10 21  1  0  0  0  0
 10 22  1  0  0  0  0
 11 23  1  0  0  0  0
 13 24  1  0  0  0  0
 13 25  1  0  0  0  0
 14 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003672

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(O[H])C(=C(C(=C1O[H])C([H])([H])[H])C([H])([H])O[H])C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C9H12O5/c1-4-5(2-10)6(3-11)8(13)9(14)7(4)12/h10-14H,2-3H2,1H3

> <INCHI_KEY>
VELVFVFRNPXMHS-UHFFFAOYSA-N

> <FORMULA>
C9H12O5

> <MOLECULAR_WEIGHT>
200.19

> <EXACT_MASS>
200.068473486

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
26

> <JCHEM_AVERAGE_POLARIZABILITY>
19.50959653199131

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4,5-bis(hydroxymethyl)-6-methylbenzene-1,2,3-triol

> <ALOGPS_LOGP>
-0.77

> <JCHEM_LOGP>
0.04127170566666673

> <ALOGPS_LOGS>
-1.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.985793823075856

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.945123276926319

> <JCHEM_PKA_STRONGEST_BASIC>
-2.874494883697964

> <JCHEM_POLAR_SURFACE_AREA>
101.15

> <JCHEM_REFRACTIVITY>
50.673700000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.44e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4,5-bis(hydroxymethyl)-6-methylbenzene-1,2,3-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       2.393  -0.281   0.800  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.147   0.303   0.303  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.018   1.619   0.007  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.055   2.494   0.151  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.208   2.115  -0.468  0.00  0.00           C+0
HETATM    6  O   UNK     0      -0.298   3.468  -0.765  0.00  0.00           O+0
HETATM    7  C   UNK     0      -1.243   1.238  -0.612  0.00  0.00           C+0
HETATM    8  O   UNK     0      -2.468   1.702  -1.079  0.00  0.00           O+0
HETATM    9  C   UNK     0      -1.120  -0.144  -0.304  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.377  -0.903  -0.514  0.00  0.00           C+0
HETATM   11  O   UNK     0      -2.446  -2.198  -0.235  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.075  -0.616   0.153  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.281  -2.017   0.511  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.456  -2.542  -0.081  0.00  0.00           O+0
HETATM   15  H   UNK     0       3.089   0.432   1.262  0.00  0.00           H+0
HETATM   16  H   UNK     0       2.252  -1.088   1.564  0.00  0.00           H+0
HETATM   17  H   UNK     0       2.932  -0.690  -0.105  0.00  0.00           H+0
HETATM   18  H   UNK     0       2.953   2.217   0.486  0.00  0.00           H+0
HETATM   19  H   UNK     0       0.508   4.048  -0.629  0.00  0.00           H+0
HETATM   20  H   UNK     0      -2.582   2.667  -1.305  0.00  0.00           H+0
HETATM   21  H   UNK     0      -2.644  -0.768  -1.628  0.00  0.00           H+0
HETATM   22  H   UNK     0      -3.264  -0.377  -0.029  0.00  0.00           H+0
HETATM   23  H   UNK     0      -3.037  -2.486   0.511  0.00  0.00           H+0
HETATM   24  H   UNK     0       0.331  -2.194   1.587  0.00  0.00           H+0
HETATM   25  H   UNK     0      -0.532  -2.630   0.008  0.00  0.00           H+0
HETATM   26  H   UNK     0       1.731  -3.369   0.411  0.00  0.00           H+0
CONECT    1    2   15   16   17                                             
CONECT    2    1    3   12                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3   18                                                       
CONECT    5    3    6    7                                                  
CONECT    6    5   19                                                       
CONECT    7    5    8    9                                                  
CONECT    8    7   20                                                       
CONECT    9    7   10   12                                                  
CONECT   10    9   11   21   22                                             
CONECT   11   10   23                                                       
CONECT   12    9   13    2                                                  
CONECT   13   12   14   24   25                                             
CONECT   14   13   26                                                       
CONECT   15    1                                                            
CONECT   16    1                                                            
CONECT   17    1                                                            
CONECT   18    4                                                            
CONECT   19    6                                                            
CONECT   20    8                                                            
CONECT   21   10                                                            
CONECT   22   10                                                            
CONECT   23   11                                                            
CONECT   24   13                                                            
CONECT   25   13                                                            
CONECT   26   14                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₉H₁₂O₅

Average Mass

200.1900 Da

Monoisotopic Mass

200.06847 Da

IUPAC Name

4,5-bis(hydroxymethyl)-6-methylbenzene-1,2,3-triol

Traditional Name

4,5-bis(hydroxymethyl)-6-methylbenzene-1,2,3-triol

CAS Registry Number

Not Available

SMILES

CC1=C(CO)C(CO)=C(O)C(O)=C1O

InChI Identifier

InChI=1S/C9H12O5/c1-4-5(2-10)6(3-11)8(13)9(14)7(4)12/h10-14H,2-3H2,1H3

InChI Key

VELVFVFRNPXMHS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aspergillus terreus	NPAtlas	11372786

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.77	ALOGPS
logP	0.041	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	8.95	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	101.15 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	50.67 m³·mol⁻¹	ChemAxon
Polarizability	19.51 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA018446

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8165954

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9990372

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nishihara Y, Takase S, Tsujii E, Hatanaka H, Hashimoto S: New anti-influenza agents, FR198248 and its derivatives. II. Characterization of FR198248, its related compounds and some derivatives. J Antibiot (Tokyo). 2001 Mar;54(3):297-303. doi: 10.7164/antibiotics.54.297. [PubMed:11372786 ]
Kim S, Park KY, Chung J, Kim YB, Lee JW, Huh SK: Comparative Analysis of Feasibility of the Retrograde Suction Decompression Technique for Microsurgical Treatment of Large and Giant Internal Carotid Artery Aneurysms. J Korean Neurosurg Soc. 2021 Aug 12. pii: jkns.2021.0066. doi: 10.3340/jkns.2021.0066. [PubMed:34380192 ]
Bahloul M, Kharrat S, Chtara K, Hafdhi M, Turki O, Baccouche N, Ammar R, Kallel N, Hsairi M, Chakroun-Walha O, Hamida CB, Chelly H, Mahfoudh KB, Karoui A, Karray H, Rekik N, Bouaziz M: Clinical characteristics and outcomes of critically ill COVID-19 patients in Sfax, Tunisia. Acute Crit Care. 2021 Aug 12. pii: acc.2021.00129. doi: 10.4266/acc.2021.00129. [PubMed:34380191 ]
Yi J, Kim KH: Identification and infection control of carbapenem-resistant Enterobacterales in intensive care units. Acute Crit Care. 2021 Aug 12. pii: acc.2021.00409. doi: 10.4266/acc.2021.00409. [PubMed:34380190 ]
Lee Y, Kim SH, Hwang HY, Sohn SH, Choi JW, Kim KH: Perfusion parameters during cardiopulmonary bypass as a predictor of acute kidney injury after aortic valve replacement. Acute Crit Care. 2021 Aug 12. pii: acc.2021.00094. doi: 10.4266/acc.2021.00094. [PubMed:34380189 ]

Showing NP-Card for 2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol (NP0003672)

MOL for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

3D MOL for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

3D SDF for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

3D-SDF for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

PDB for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

3D PDB for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

SMILES for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

INCHI for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

Structure for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)

3D Structure for NP0003672 (2,3,4-trihydroxy-6-(hydroxymethyl)-5-methylbenzylacohol)