Record Information |
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Version | 2.0 |
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Created at | 2020-12-09 00:49:33 UTC |
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Updated at | 2021-07-15 16:46:56 UTC |
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NP-MRD ID | NP0003630 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | Destomycin C |
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Provided By | NPAtlas |
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Description | (2S,3'R,3aR,4S,4'S,5'R,6S,6'R,7S,7aR)-6'-[(1R)-1-amino-2-hydroxyethyl]-4-{[(2R,3S,5S,6R)-2,6-dihydroxy-3,5-bis(methylamino)cyclohexyl]oxy}-6-(hydroxymethyl)-tetrahydro-3aH-spiro[[1,3]dioxolo[4,5-c]pyran-2,2'-oxane]-3',4',5',7-tetrol belongs to the class of organic compounds known as 2-deoxystreptamine aminoglycosides. These are aminoglycosides containing the 2-deoxystreptamine (1,3-diaminocyclohexane-4,5,6-triol) core. Destomycin C is found in Streptomyces rimofaciens and Streptomyces rimofaciens n. sp.. Destomycin C was first documented in 1975 (PMID: 1126870). Based on a literature review very few articles have been published on (2S,3'R,3aR,4S,4'S,5'R,6S,6'R,7S,7aR)-6'-[(1R)-1-amino-2-hydroxyethyl]-4-{[(2R,3S,5S,6R)-2,6-dihydroxy-3,5-bis(methylamino)cyclohexyl]oxy}-6-(hydroxymethyl)-tetrahydro-3aH-spiro[[1,3]dioxolo[4,5-c]pyran-2,2'-oxane]-3',4',5',7-tetrol. |
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Structure | [H]OC([H])([H])[C@@]([H])(N([H])[H])[C@@]1([H])O[C@@]2(O[C@]3([H])[C@]([H])(O2)[C@@]([H])(O[H])[C@@]([H])(O[C@@]3([H])OC2([H])[C@]([H])(O[H])[C@@]([H])(N([H])C([H])([H])[H])C([H])([H])[C@]([H])(N([H])C([H])([H])[H])[C@@]2([H])O[H])C([H])([H])O[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@@]1([H])O[H] InChI=1S/C21H39N3O13/c1-23-7-3-8(24-2)11(28)16(10(7)27)34-20-18-17(12(29)9(5-26)33-20)36-21(37-18)19(32)14(31)13(30)15(35-21)6(22)4-25/h6-20,23-32H,3-5,22H2,1-2H3/t6-,7+,8+,9+,10-,11-,12+,13-,14+,15-,17-,18-,19-,20+,21+/m1/s1 |
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Synonyms | Not Available |
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Chemical Formula | C21H39N3O13 |
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Average Mass | 541.5510 Da |
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Monoisotopic Mass | 541.24829 Da |
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IUPAC Name | (2S,3'R,3aR,4S,4'S,5'R,6S,6'R,7S,7aR)-6'-[(1R)-1-amino-2-hydroxyethyl]-4-{[(2R,3S,5S,6R)-2,6-dihydroxy-3,5-bis(methylamino)cyclohexyl]oxy}-6-(hydroxymethyl)-tetrahydro-3aH-spiro[[1,3]dioxolo[4,5-c]pyran-2,2'-oxane]-3',4',5',7-tetrol |
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Traditional Name | (2S,3'R,3aR,4S,4'S,5'R,6S,6'R,7S,7aR)-6'-[(1R)-1-amino-2-hydroxyethyl]-4-{[(2R,3S,5S,6R)-2,6-dihydroxy-3,5-bis(methylamino)cyclohexyl]oxy}-6-(hydroxymethyl)-tetrahydro-3aH-spiro[[1,3]dioxolo[4,5-c]pyran-2,2'-oxane]-3',4',5',7-tetrol |
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CAS Registry Number | Not Available |
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SMILES | CN[C@H]1C[C@H](NC)[C@@H](O)C(O[C@@H]2O[C@@H](CO)[C@H](O)[C@H]3O[C@@]4(O[C@@H]23)O[C@H]([C@H](N)CO)[C@H](O)[C@H](O)[C@H]4O)[C@@H]1O |
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InChI Identifier | InChI=1S/C21H39N3O13/c1-23-7-3-8(24-2)11(28)16(10(7)27)34-20-18-17(12(29)9(5-26)33-20)36-21(37-18)19(32)14(31)13(30)15(35-21)6(22)4-25/h6-20,23-32H,3-5,22H2,1-2H3/t6-,7+,8+,9+,10-,11-,12+,13-,14+,15-,17-,18-,19-,20+,21+/m1/s1 |
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InChI Key | XQRJFJIKNNEPNI-UNGVYMPWSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as 2-deoxystreptamine aminoglycosides. These are aminoglycosides containing the 2-deoxystreptamine (1,3-diaminocyclohexane-4,5,6-triol) core. |
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Kingdom | Organic compounds |
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Super Class | Organic oxygen compounds |
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Class | Organooxygen compounds |
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Sub Class | Carbohydrates and carbohydrate conjugates |
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Direct Parent | 2-deoxystreptamine aminoglycosides |
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Alternative Parents | |
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Substituents | - 2-deoxystreptamine aminoglycoside
- O-glycosyl compound
- Glycosyl compound
- Disaccharide
- Dioxolopyran
- Aminocyclitol or derivatives
- Ortho ester
- Cyclohexylamine
- Cyclohexanol
- Carboxylic acid orthoester
- Oxane
- Cyclitol or derivatives
- Cyclic alcohol
- Meta-dioxolane
- Secondary alcohol
- Orthocarboxylic acid derivative
- 1,2-aminoalcohol
- Oxacycle
- Organoheterocyclic compound
- Secondary amine
- Polyol
- Secondary aliphatic amine
- Acetal
- Organic nitrogen compound
- Organopnictogen compound
- Hydrocarbon derivative
- Primary amine
- Primary alcohol
- Organonitrogen compound
- Primary aliphatic amine
- Amine
- Alcohol
- Aliphatic heteropolycyclic compound
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Molecular Framework | Aliphatic heteropolycyclic compounds |
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External Descriptors | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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