NP-MRD: Showing NP-Card for Tubulysin B (NP0003537)

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Record Information

Version

2.0

Created at

2020-12-09 00:45:45 UTC

Updated at

2021-07-15 16:46:40 UTC

NP-MRD ID

NP0003537

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Tubulysin B

Provided By

NPAtlas

Description

Tubulysin B is found in Archangium gephyra and Archangium gephyra Ar 315. Based on a literature review very few articles have been published on 4-[({2-[1-(acetyloxy)-3-{N-[(butanoyloxy)methyl]-2-{[hydroxy(1-methylpiperidin-2-yl)methylidene]amino}-3-methylpentanamido}-4-methylpentyl]-1,3-thiazol-4-yl}(hydroxy)methylidene)amino]-5-(4-hydroxyphenyl)-2-methylpentanoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012117103D          

121123  0  0  0  0            999 V2000
   -4.1869    6.8603   -0.7725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8778    6.7880   -0.0289 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9796    5.9703    1.2178 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4007    4.5562    0.9721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7246    3.8833    2.0264 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4901    3.9115   -0.1292 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6463    3.0895   -1.1311 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8384    1.8406   -1.0503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4156    0.6594   -0.5895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6435   -0.3806   -0.4158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8186    0.3596   -0.2717 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8954   -1.1416    0.0024 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5872   -1.9784   -0.8984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1389   -1.5507   -1.9467 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6233   -3.4352   -0.5164 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9604   -4.2838   -1.5768 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0361   -5.7232   -1.1710 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7568   -5.9756    0.2813 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0518   -4.7232    0.8019 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0333   -3.6777    0.7666 N   0  0  2  0  0  0  0  0  0  0  0  0
   -6.0065   -3.9758    1.8089 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4183    1.0307    0.9006 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7595    0.6755    2.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9028    0.9890    0.9077 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6054   -0.3128    0.9047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4288    1.9941   -1.4588 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4523    2.0539   -0.3702 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1796    0.9844    0.5825 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8094    1.6021    1.5100 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6867    1.5163    2.8600 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6623    2.1161    3.7883 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3134    0.8966    3.3560 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7638   -0.0684   -0.0379 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9025    0.2481   -0.6643 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6411   -0.7274   -1.0869 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9708   -0.3218   -1.8426 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6355    0.2733   -2.8481 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0943   -0.6905   -1.2176 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.2998   -1.0736   -0.5682 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.6835   -0.0734    0.4135 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.8086   -0.0593    1.2894 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8585   -0.9607    2.3547 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8219   -0.9047    3.2910 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8133    0.0726    3.2182 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7635    0.0971    4.1872 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7650    0.9529    2.1772 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7827    0.8947    1.2236 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1269   -1.8685   -1.4601 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.4617   -2.3925   -1.1709 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.4953   -1.2831   -1.0502 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9671   -3.4224   -2.0791 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3922   -3.8263   -3.0746 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.2242   -3.9910   -1.7688 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2823   -1.9884   -0.9032 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7654   -1.7487   -0.0650 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0955    1.3682   -2.7520 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2854   -0.0652   -3.0017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9109    2.0955   -3.8513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1701    6.2420   -1.7001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4389    7.9014   -1.1309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0489    6.5314   -0.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6448    7.8465    0.3074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0808    6.4322   -0.7053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0050    5.9819    1.8011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7234    6.4564    1.8815 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2667    3.5593   -2.0915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7083    2.8103   -1.3251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4481    0.5116   -1.1478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4429   -1.5187    0.8350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6917   -3.7265   -0.5112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8938   -3.9302   -1.6580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5292   -4.1865   -2.5201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2440   -6.2652   -1.7389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0315   -6.1463   -1.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7184   -6.0640    0.8736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1262   -6.8472    0.4897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7829   -4.9259    1.8409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1408   -4.5260    0.1876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6030   -4.7842    2.4943 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9451   -4.3253    1.3928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0762   -3.0713    2.4524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2035    2.1519    0.7838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4855   -0.0199    2.7247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8006    0.1641    2.1155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6481    1.5310    2.8878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3067    1.6581    1.7560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2968    1.5663    0.0015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5445   -0.2060    1.5481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9584   -0.6325   -0.1243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0881   -1.1803    1.3425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4300    3.1411   -1.7992 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5771    2.3986   -0.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7231    2.9840    0.2626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8693    0.5471    1.2308 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9400    1.3859    4.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6385    2.3243    3.2512 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2795    3.0191    4.2887 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8546   -0.0738   -2.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8803   -1.9632    0.1693 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7176    0.1636    1.0738 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7030    0.9362   -0.1545 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1028   -1.7283    2.4057 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7953   -1.6342    4.0981 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5347    0.7208    4.2852 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5421    1.7005    2.1279 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8345    1.6489    0.4268 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1526   -1.3382   -2.4849 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4701   -2.7884   -1.7477 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3909   -2.9246   -0.1525 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0617   -0.3105   -1.3279 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9849   -1.2340   -0.0666 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2613   -1.4811   -1.8780 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0558   -3.8121   -2.2699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7394   -2.9576   -1.1744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0272    1.7059   -2.9937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9852   -0.2194   -4.1079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8211   -0.8016   -2.3818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3794   -0.3336   -3.0814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6379    3.1651   -3.8055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5723    1.7181   -4.8449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9925    1.8973   -3.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
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 13 14  2  0  0  0  0
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  8 26  1  0  0  0  0
 26 27  1  0  0  0  0
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 56 58  1  0  0  0  0
 20 15  1  0  0  0  0
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 47 41  1  0  0  0  0
  1 59  1  0  0  0  0
  1 60  1  0  0  0  0
  1 61  1  0  0  0  0
  2 62  1  0  0  0  0
  2 63  1  0  0  0  0
  3 64  1  0  0  0  0
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  7 66  1  0  0  0  0
  7 67  1  0  0  0  0
 11 68  1  6  0  0  0
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M  END

     RDKit          3D

121123  0  0  0  0  0  0  0  0999 V2000
   -4.1869    6.8603   -0.7725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8778    6.7880   -0.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9796    5.9703    1.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4007    4.5562    0.9721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7246    3.8833    2.0264 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4901    3.9115   -0.1292 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6463    3.0895   -1.1311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8384    1.8406   -1.0503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4156    0.6594   -0.5895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6435   -0.3806   -0.4158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8186    0.3596   -0.2717 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8954   -1.1416    0.0024 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5872   -1.9784   -0.8984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1389   -1.5507   -1.9467 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6233   -3.4352   -0.5164 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9604   -4.2838   -1.5768 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652307012117103D          

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 58121  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003537

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]([H])(N([H])C(=O)C1=C([H])SC(=N1)[C@@]([H])(OC(=O)C([H])([H])[H])C([H])([H])[C@]([H])(N(C(=O)[C@@]([H])(N([H])C(=O)[C@]1([H])N(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C1([H])[H])[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])OC(=O)C([H])([H])C([H])([H])C([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C(O[H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C42H63N5O10S/c1-9-13-36(50)56-24-47(41(53)37(26(5)10-2)45-39(52)33-14-11-12-19-46(33)8)34(25(3)4)22-35(57-28(7)48)40-44-32(23-58-40)38(51)43-30(20-27(6)42(54)55)21-29-15-17-31(49)18-16-29/h15-18,23,25-27,30,33-35,37,49H,9-14,19-22,24H2,1-8H3,(H,43,51)(H,45,52)(H,54,55)/t26-,27+,30+,33-,34+,35+,37+/m1/s1

> <INCHI_KEY>
HWCIETDQUHYHGQ-UHFFFAOYSA-N

> <FORMULA>
C42H63N5O10S

> <MOLECULAR_WEIGHT>
830.05

> <EXACT_MASS>
829.429564423

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
121

> <JCHEM_AVERAGE_POLARIZABILITY>
90.50883539869298

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-4-({2-[(1S)-1-(acetyloxy)-3-[(2S,3R)-N-[(butanoyloxy)methyl]-3-methyl-2-{[(2R)-1-methylpiperidin-2-yl]formamido}pentanamido]-4-methylpentyl]-1,3-thiazol-4-yl}formamido)-5-(4-hydroxyphenyl)-2-methylpentanoic acid

> <ALOGPS_LOGP>
4.16

> <JCHEM_LOGP>
3.065845059430499

> <ALOGPS_LOGS>
-5.63

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.505104861420286

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.6915253276232196

> <JCHEM_PKA_STRONGEST_BASIC>
7.083800271370617

> <JCHEM_POLAR_SURFACE_AREA>
204.76999999999998

> <JCHEM_REFRACTIVITY>
217.30300000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.96e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-4-({2-[(1S)-1-(acetyloxy)-3-[(2S,3R)-N-[(butanoyloxy)methyl]-3-methyl-2-{[(2R)-1-methylpiperidin-2-yl]formamido}pentanamido]-4-methylpentyl]-1,3-thiazol-4-yl}formamido)-5-(4-hydroxyphenyl)-2-methylpentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

121123  0  0  0  0  0  0  0  0999 V2000
   -4.1869    6.8603   -0.7725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8778    6.7880   -0.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9796    5.9703    1.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4007    4.5562    0.9721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7246    3.8833    2.0264 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8384    1.8406   -1.0503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4156    0.6594   -0.5895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6435   -0.3806   -0.4158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8186    0.3596   -0.2717 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8954   -1.1416    0.0024 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5872   -1.9784   -0.8984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1389   -1.5507   -1.9467 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.9604   -4.2838   -1.5768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0361   -5.7232   -1.1710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7568   -5.9756    0.2813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0518   -4.7232    0.8019 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.4183    1.0307    0.9006 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7595    0.6755    2.2117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9028    0.9890    0.9077 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6054   -0.3128    0.9047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4288    1.9941   -1.4588 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4523    2.0539   -0.3702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1796    0.9844    0.5825 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8094    1.6021    1.5100 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6867    1.5163    2.8600 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6623    2.1161    3.7883 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3134    0.8966    3.3560 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7638   -0.0684   -0.0379 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9025    0.2481   -0.6643 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6411   -0.7274   -1.0869 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9708   -0.3218   -1.8426 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6355    0.2733   -2.8481 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0943   -0.6905   -1.2176 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.2998   -1.0736   -0.5682 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.6835   -0.0734    0.4135 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8086   -0.0593    1.2894 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8585   -0.9607    2.3547 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8219   -0.9047    3.2910 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8133    0.0726    3.2182 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7635    0.0971    4.1872 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7650    0.9529    2.1772 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7827    0.8947    1.2236 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1269   -1.8685   -1.4601 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      -4.187   6.860  -0.773  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.878   6.788  -0.029  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.980   5.970   1.218  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.401   4.556   0.972  0.00  0.00           C+0
HETATM    5  O   UNK     0      -3.725   3.883   2.026  0.00  0.00           O+0
HETATM    6  O   UNK     0      -3.490   3.912  -0.129  0.00  0.00           O+0
HETATM    7  C   UNK     0      -3.646   3.090  -1.131  0.00  0.00           C+0
HETATM    8  N   UNK     0      -2.838   1.841  -1.050  0.00  0.00           N+0
HETATM    9  C   UNK     0      -3.416   0.659  -0.590  0.00  0.00           C+0
HETATM   10  O   UNK     0      -2.644  -0.381  -0.416  0.00  0.00           O+0
HETATM   11  C   UNK     0      -4.819   0.360  -0.272  0.00  0.00           C+0
HETATM   12  N   UNK     0      -4.895  -1.142   0.002  0.00  0.00           N+0
HETATM   13  C   UNK     0      -5.587  -1.978  -0.898  0.00  0.00           C+0
HETATM   14  O   UNK     0      -6.139  -1.551  -1.947  0.00  0.00           O+0
HETATM   15  C   UNK     0      -5.623  -3.435  -0.516  0.00  0.00           C+0
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HETATM   18  C   UNK     0      -4.757  -5.976   0.281  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.052  -4.723   0.802  0.00  0.00           C+0
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HETATM   21  C   UNK     0      -6.006  -3.976   1.809  0.00  0.00           C+0
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HETATM   23  C   UNK     0      -4.760   0.676   2.212  0.00  0.00           C+0
HETATM   24  C   UNK     0      -6.903   0.989   0.908  0.00  0.00           C+0
HETATM   25  C   UNK     0      -7.605  -0.313   0.905  0.00  0.00           C+0
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HETATM   27  C   UNK     0      -0.452   2.054  -0.370  0.00  0.00           C+0
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HETATM   29  O   UNK     0       0.809   1.602   1.510  0.00  0.00           O+0
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HETATM   32  O   UNK     0      -0.313   0.897   3.356  0.00  0.00           O+0
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HETATM   34  N   UNK     0       1.903   0.248  -0.664  0.00  0.00           N+0
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HETATM   44  C   UNK     0       9.813   0.073   3.218  0.00  0.00           C+0
HETATM   45  O   UNK     0      10.764   0.097   4.187  0.00  0.00           O+0
HETATM   46  C   UNK     0       9.765   0.953   2.177  0.00  0.00           C+0
HETATM   47  C   UNK     0       8.783   0.895   1.224  0.00  0.00           C+0
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HETATM   54  C   UNK     0       2.282  -1.988  -0.903  0.00  0.00           C+0
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HETATM   63  H   UNK     0      -2.081   6.432  -0.705  0.00  0.00           H+0
HETATM   64  H   UNK     0      -2.005   5.982   1.801  0.00  0.00           H+0
HETATM   65  H   UNK     0      -3.723   6.456   1.882  0.00  0.00           H+0
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HETATM   67  H   UNK     0      -4.708   2.810  -1.325  0.00  0.00           H+0
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HETATM   93  H   UNK     0      -0.723   2.984   0.263  0.00  0.00           H+0
HETATM   94  H   UNK     0      -0.869   0.547   1.231  0.00  0.00           H+0
HETATM   95  H   UNK     0       1.940   1.386   4.606  0.00  0.00           H+0
HETATM   96  H   UNK     0       2.639   2.324   3.251  0.00  0.00           H+0
HETATM   97  H   UNK     0       1.280   3.019   4.289  0.00  0.00           H+0
HETATM   98  H   UNK     0       5.855  -0.074  -2.168  0.00  0.00           H+0
HETATM   99  H   UNK     0       5.880  -1.963   0.169  0.00  0.00           H+0
HETATM  100  H   UNK     0       5.718   0.164   1.074  0.00  0.00           H+0
HETATM  101  H   UNK     0       6.703   0.936  -0.155  0.00  0.00           H+0
HETATM  102  H   UNK     0       7.103  -1.728   2.406  0.00  0.00           H+0
HETATM  103  H   UNK     0       8.795  -1.634   4.098  0.00  0.00           H+0
HETATM  104  H   UNK     0      11.535   0.721   4.285  0.00  0.00           H+0
HETATM  105  H   UNK     0      10.542   1.700   2.128  0.00  0.00           H+0
HETATM  106  H   UNK     0       8.835   1.649   0.427  0.00  0.00           H+0
HETATM  107  H   UNK     0       7.153  -1.338  -2.485  0.00  0.00           H+0
HETATM  108  H   UNK     0       6.470  -2.788  -1.748  0.00  0.00           H+0
HETATM  109  H   UNK     0       8.391  -2.925  -0.153  0.00  0.00           H+0
HETATM  110  H   UNK     0       9.062  -0.311  -1.328  0.00  0.00           H+0
HETATM  111  H   UNK     0       9.985  -1.234  -0.067  0.00  0.00           H+0
HETATM  112  H   UNK     0      10.261  -1.481  -1.878  0.00  0.00           H+0
HETATM  113  H   UNK     0      11.056  -3.812  -2.270  0.00  0.00           H+0
HETATM  114  H   UNK     0       2.739  -2.958  -1.174  0.00  0.00           H+0
HETATM  115  H   UNK     0      -0.027   1.706  -2.994  0.00  0.00           H+0
HETATM  116  H   UNK     0      -0.985  -0.219  -4.108  0.00  0.00           H+0
HETATM  117  H   UNK     0      -0.821  -0.802  -2.382  0.00  0.00           H+0
HETATM  118  H   UNK     0      -2.379  -0.334  -3.081  0.00  0.00           H+0
HETATM  119  H   UNK     0      -1.638   3.165  -3.805  0.00  0.00           H+0
HETATM  120  H   UNK     0      -1.572   1.718  -4.845  0.00  0.00           H+0
HETATM  121  H   UNK     0      -2.993   1.897  -3.753  0.00  0.00           H+0
CONECT    1    2   59   60   61                                             
CONECT    2    1    3   62   63                                             
CONECT    3    2    4   64   65                                             
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8   66   67                                             
CONECT    8    7    9   26                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   22   68                                             
CONECT   12   11   13   69                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   20   70                                             
CONECT   16   15   17   71   72                                             
CONECT   17   16   18   73   74                                             
CONECT   18   17   19   75   76                                             
CONECT   19   18   20   77   78                                             
CONECT   20   19   21   15                                                  
CONECT   21   20   79   80   81                                             
CONECT   22   11   23   24   82                                             
CONECT   23   22   83   84   85                                             
CONECT   24   22   25   86   87                                             
CONECT   25   24   88   89   90                                             
CONECT   26    8   27   56   91                                             
CONECT   27   26   28   92   93                                             
CONECT   28   27   29   33   94                                             
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30   95   96   97                                             
CONECT   32   30                                                            
CONECT   33   28   34   55                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   54                                                  
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39   98                                                  
CONECT   39   38   40   48   99                                             
CONECT   40   39   41  100  101                                             
CONECT   41   40   42   47                                                  
CONECT   42   41   43  102                                                  
CONECT   43   42   44  103                                                  
CONECT   44   43   45   46                                                  
CONECT   45   44  104                                                       
CONECT   46   44   47  105                                                  
CONECT   47   46   41  106                                                  
CONECT   48   39   49  107  108                                             
CONECT   49   48   50   51  109                                             
CONECT   50   49  110  111  112                                             
CONECT   51   49   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51  113                                                       
CONECT   54   35   55  114                                                  
CONECT   55   54   33                                                       
CONECT   56   26   57   58  115                                             
CONECT   57   56  116  117  118                                             
CONECT   58   56  119  120  121                                             
CONECT   59    1                                                            
CONECT   60    1                                                            
CONECT   61    1                                                            
CONECT   62    2                                                            
CONECT   63    2                                                            
CONECT   64    3                                                            
CONECT   65    3                                                            
CONECT   66    7                                                            
CONECT   67    7                                                            
CONECT   68   11                                                            
CONECT   69   12                                                            
CONECT   70   15                                                            
CONECT   71   16                                                            
CONECT   72   16                                                            
CONECT   73   17                                                            
CONECT   74   17                                                            
CONECT   75   18                                                            
CONECT   76   18                                                            
CONECT   77   19                                                            
CONECT   78   19                                                            
CONECT   79   21                                                            
CONECT   80   21                                                            
CONECT   81   21                                                            
CONECT   82   22                                                            
CONECT   83   23                                                            
CONECT   84   23                                                            
CONECT   85   23                                                            
CONECT   86   24                                                            
CONECT   87   24                                                            
CONECT   88   25                                                            
CONECT   89   25                                                            
CONECT   90   25                                                            
CONECT   91   26                                                            
CONECT   92   27                                                            
CONECT   93   27                                                            
CONECT   94   28                                                            
CONECT   95   31                                                            
CONECT   96   31                                                            
CONECT   97   31                                                            
CONECT   98   38                                                            
CONECT   99   39                                                            
CONECT  100   40                                                            
CONECT  101   40                                                            
CONECT  102   42                                                            
CONECT  103   43                                                            
CONECT  104   45                                                            
CONECT  105   46                                                            
CONECT  106   47                                                            
CONECT  107   48                                                            
CONECT  108   48                                                            
CONECT  109   49                                                            
CONECT  110   50                                                            
CONECT  111   50                                                            
CONECT  112   50                                                            
CONECT  113   53                                                            
CONECT  114   54                                                            
CONECT  115   56                                                            
CONECT  116   57                                                            
CONECT  117   57                                                            
CONECT  118   57                                                            
CONECT  119   58                                                            
CONECT  120   58                                                            
CONECT  121   58                                                            
MASTER        0    0    0    0    0    0    0    0  121    0  246    0
END

RDKit          3D

121123  0  0  0  0  0  0  0  0999 V2000
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   -2.8778    6.7880   -0.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
4-[({2-[1-(acetyloxy)-3-{n-[(butanoyloxy)methyl]-2-{[hydroxy(1-methylpiperidin-2-yl)methylidene]amino}-3-methylpentanamido}-4-methylpentyl]-1,3-thiazol-4-yl}(hydroxy)methylidene)amino]-5-(4-hydroxyphenyl)-2-methylpentanoate	Generator

Chemical Formula

C₄₂H₆₃N₅O₁₀S

Average Mass

830.0500 Da

Monoisotopic Mass

829.42956 Da

IUPAC Name

(2S)-4-({2-[(1S)-1-(acetyloxy)-3-[(2S,3R)-N-[(butanoyloxy)methyl]-3-methyl-2-{[(2R)-1-methylpiperidin-2-yl]formamido}pentanamido]-4-methylpentyl]-1,3-thiazol-4-yl}formamido)-5-(4-hydroxyphenyl)-2-methylpentanoic acid

Traditional Name

CAS Registry Number

Not Available

SMILES

CCCC(=O)OCN(C(CC(OC(C)=O)C1=NC(=CS1)C(=O)NC(CC(C)C(O)=O)CC1=CC=C(O)C=C1)C(C)C)C(=O)C(NC(=O)C1CCCCN1C)C(C)CC

InChI Identifier

InChI=1S/C42H63N5O10S/c1-9-13-36(50)56-24-47(41(53)37(26(5)10-2)45-39(52)33-14-11-12-19-46(33)8)34(25(3)4)22-35(57-28(7)48)40-44-32(23-58-40)38(51)43-30(20-27(6)42(54)55)21-29-15-17-31(49)18-16-29/h15-18,23,25-27,30,33-35,37,49H,9-14,19-22,24H2,1-8H3,(H,43,51)(H,45,52)(H,54,55)

InChI Key

HWCIETDQUHYHGQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Archangium gephyra	NPAtlas	11099220
Archangium gephyra Ar 315	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.16	ALOGPS
logP	3.07	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	3.69	ChemAxon
pKa (Strongest Basic)	7.08	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	204.77 Å²	ChemAxon
Rotatable Bond Count	24	ChemAxon
Refractivity	217.3 m³·mol⁻¹	ChemAxon
Polarizability	90.51 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA019305

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8094591

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9918949

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Tubulysin B (NP0003537)

MOL for NP0003537 (Tubulysin B)

3D MOL for NP0003537 (Tubulysin B)

3D SDF for NP0003537 (Tubulysin B)

3D-SDF for NP0003537 (Tubulysin B)

PDB for NP0003537 (Tubulysin B)

3D PDB for NP0003537 (Tubulysin B)

SMILES for NP0003537 (Tubulysin B)

INCHI for NP0003537 (Tubulysin B)

Structure for NP0003537 (Tubulysin B)

3D Structure for NP0003537 (Tubulysin B)