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Record Information
Version2.0
Created at2020-12-09 00:44:25 UTC
Updated at2021-07-15 16:46:36 UTC
NP-MRD IDNP0003514
Secondary Accession NumbersNone
Natural Product Identification
Common NameFriulimicin B
Provided ByNPAtlasNPAtlas Logo
Description2-[16-(1-Aminoethyl)-22,28-bis(carboxymethyl)-6,15,18,21,24,27,30,33-octahydroxy-3-[(1-hydroxy-2-{[(3E)-1-hydroxy-12-methyltridec-3-en-1-ylidene]amino}-3-(C-hydroxycarbonimidoyl)propylidene)amino]-4-methyl-2,12-dioxo-13-(propan-2-yl)-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0⁷,¹¹]Octatriaconta-5,14,17,20,23,26,29,32-octaen-31-yl]propanoic acid belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Friulimicin B is found in Actinoplanes friuliensis. Friulimicin B was first documented in 2000 (PMID: 11079804). Based on a literature review very few articles have been published on 2-[16-(1-aminoethyl)-22,28-bis(carboxymethyl)-6,15,18,21,24,27,30,33-octahydroxy-3-[(1-hydroxy-2-{[(3E)-1-hydroxy-12-methyltridec-3-en-1-ylidene]amino}-3-(C-hydroxycarbonimidoyl)propylidene)amino]-4-methyl-2,12-dioxo-13-(propan-2-yl)-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0⁷,¹¹]Octatriaconta-5,14,17,20,23,26,29,32-octaen-31-yl]propanoic acid.
Structure
Thumb
Synonyms
ValueSource
2-[16-(1-Aminoethyl)-22,28-bis(carboxymethyl)-6,15,18,21,24,27,30,33-octahydroxy-3-[(1-hydroxy-2-{[(3E)-1-hydroxy-12-methyltridec-3-en-1-ylidene]amino}-3-(C-hydroxycarbonimidoyl)propylidene)amino]-4-methyl-2,12-dioxo-13-(propan-2-yl)-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0,]octatriaconta-5,14,17,20,23,26,29,32-octaen-31-yl]propanoateGenerator
Chemical FormulaC59H94N14O19
Average Mass1303.4800 Da
Monoisotopic Mass1302.68197 Da
IUPAC Name(2R)-2-[(3R,4S,7S,13R,16S,22S,28S,31R,34R)-16-[(1S)-1-aminoethyl]-3-[(2R)-3-carbamoyl-2-[(3E)-12-methyltridec-3-enamido]propanamido]-22,28-bis(carboxymethyl)-4-methyl-2,6,12,15,18,21,24,27,30,33-decaoxo-13-(propan-2-yl)-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0^{7,11}]octatriacontan-31-yl]propanoic acid
Traditional Name(2R)-2-[(3R,4S,7S,13R,16S,22S,28S,31R,34R)-16-[(1S)-1-aminoethyl]-3-[(2R)-3-carbamoyl-2-[(3E)-12-methyltridec-3-enamido]propanamido]-22,28-bis(carboxymethyl)-13-isopropyl-4-methyl-2,6,12,15,18,21,24,27,30,33-decaoxo-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0^{7,11}]octatriacontan-31-yl]propanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)CCCCCCC\C=C\CC(=O)NC(CC(N)=O)C(=O)NC1C(C)NC(=O)C2CCCN2C(=O)C(NC(=O)C(NC(=O)CNC(=O)C(CC(O)=O)NC(=O)CNC(=O)C(CC(O)=O)NC(=O)C(NC(=O)C2CCCCN2C1=O)C(C)C(O)=O)C(C)N)C(C)C
InChI Identifier
InChI=1S/C59H94N14O19/c1-30(2)19-14-12-10-8-9-11-13-15-22-41(75)65-35(25-40(61)74)52(84)71-49-34(7)64-53(85)39-21-18-24-73(39)57(89)46(31(3)4)69-56(88)48(33(6)60)68-43(77)29-63-50(82)36(26-44(78)79)66-42(76)28-62-51(83)37(27-45(80)81)67-55(87)47(32(5)59(91)92)70-54(86)38-20-16-17-23-72(38)58(49)90/h13,15,30-39,46-49H,8-12,14,16-29,60H2,1-7H3,(H2,61,74)(H,62,83)(H,63,82)(H,64,85)(H,65,75)(H,66,76)(H,67,87)(H,68,77)(H,69,88)(H,70,86)(H,71,84)(H,78,79)(H,80,81)(H,91,92)/b15-13+
InChI KeyHVYFVLAUKMGKHL-FYWRMAATSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Actinoplanes friuliensisNPAtlas
Species Where Detected
Species NameSourceReference
Actinoplanes friuliensis HAG 010964KNApSAcK Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentOligopeptides
Alternative Parents
Substituents
  • Alpha-oligopeptide
  • Cyclic alpha peptide
  • Asparagine or derivatives
  • Macrolactam
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Beta amino acid or derivatives
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Tricarboxylic acid or derivatives
  • N-acyl-amine
  • Fatty amide
  • Piperidine
  • Fatty acyl
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Primary carboxylic acid amide
  • Lactam
  • Amino acid or derivatives
  • Amino acid
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid
  • Primary amine
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Amine
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.5ALOGPS
logP-7.2ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)3.08ChemAxon
pKa (Strongest Basic)8.33ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count20ChemAxon
Hydrogen Donor Count15ChemAxon
Polar Surface Area512.63 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity321.78 m³·mol⁻¹ChemAxon
Polarizability134.85 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA019183
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8662005
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10486600
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Vertesy L, Ehlers E, Kogler H, Kurz M, Meiwes J, Seibert G, Vogel M, Hammann P: Friulimicins: novel lipopeptide antibiotics with peptidoglycan synthesis inhibiting activity from Actinoplanes friuliensis sp. nov. II. Isolation and structural characterization. J Antibiot (Tokyo). 2000 Aug;53(8):816-27. doi: 10.7164/antibiotics.53.816. [PubMed:11079804 ]