NP-MRD: Showing NP-Card for Daidzein 7-α-L-rhamnoside (NP0003502)

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Record Information

Version

2.0

Created at

2020-12-09 00:43:57 UTC

Updated at

2021-07-15 16:46:34 UTC

NP-MRD ID

NP0003502

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Daidzein 7-α-L-rhamnoside

Provided By

NPAtlas

Description

Daidzein 7-α-L-rhamnoside is found in Streptomyces and Streptomyces xanthophaeus. Based on a literature review very few articles have been published on 3-(4-hydroxyphenyl)-7-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-4H-chromen-4-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI

  Mrv1652306242117483D          

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M  END

     RDKit          3D

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  Mrv1652306242117483D          

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 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 12 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
  4 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28  2  1  0  0  0  0
 23  6  1  0  0  0  0
 22  9  1  0  0  0  0
 19 13  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  2 33  1  1  0  0  0
  4 34  1  1  0  0  0
  7 35  1  0  0  0  0
  8 36  1  0  0  0  0
 14 37  1  0  0  0  0
 15 38  1  0  0  0  0
 17 39  1  0  0  0  0
 18 40  1  0  0  0  0
 19 41  1  0  0  0  0
 20 42  1  0  0  0  0
 23 43  1  0  0  0  0
 24 44  1  6  0  0  0
 25 45  1  0  0  0  0
 26 46  1  1  0  0  0
 27 47  1  0  0  0  0
 28 48  1  6  0  0  0
 29 49  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003502

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1[H])C1=C([H])OC2=C([H])C(O[C@]3([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@@]3([H])O[H])=C([H])C([H])=C2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C21H20O8/c1-10-17(23)19(25)20(26)21(28-10)29-13-6-7-14-16(8-13)27-9-15(18(14)24)11-2-4-12(22)5-3-11/h2-10,17,19-23,25-26H,1H3/t10-,17-,19+,20+,21-/m0/s1

> <INCHI_KEY>
SZMVUVJWZJONPP-KIPYVINTSA-N

> <FORMULA>
C21H20O8

> <MOLECULAR_WEIGHT>
400.383

> <EXACT_MASS>
400.115817604

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
41.3731672811881

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-(4-hydroxyphenyl)-7-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-4H-chromen-4-one

> <ALOGPS_LOGP>
1.55

> <JCHEM_LOGP>
1.509279584666667

> <ALOGPS_LOGS>
-3.04

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.213843627952546

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.962965475528385

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6122003586492335

> <JCHEM_POLAR_SURFACE_AREA>
125.68000000000002

> <JCHEM_REFRACTIVITY>
100.3027

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.65e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(4-hydroxyphenyl)-7-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}chromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 49 52  0  0  0  0  0  0  0  0999 V2000
   -4.6929   -0.9889    2.9325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1361   -1.0786    1.4646 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0342   -1.4221    0.7404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4209   -0.3878    0.0372 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3276   -0.9299   -0.6223 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9993   -0.5830   -0.4314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5572    0.3697    0.4581 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7725    0.7127    0.6449 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7087    0.0482   -0.1174 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0367    0.3943    0.0727 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3993    1.2747    0.9000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9786   -0.2610   -0.6813 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3714    0.0689   -0.5146 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8032    1.3772   -0.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1444    1.6607   -0.2829 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1011    0.6616   -0.1889 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4567    0.9889   -0.0266 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6743   -0.6350   -0.2600 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3212   -0.9291   -0.4214 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5380   -1.2187   -1.5761 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2671   -1.5068   -1.7154 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3015   -0.9187   -1.0250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0159   -1.2398   -1.1916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3575    0.1816   -1.0196 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9358    1.4837   -1.2781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7715    0.2744   -0.4646 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4280    1.3820   -0.9439 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6647    0.2753    1.0630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.9291    0.5126    1.6203 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5291   -1.1566    3.6207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2230    0.0137    3.0369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9242   -1.7766    3.1074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9465   -1.8394    1.3822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1125    0.3711    0.7515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2744    0.9061    1.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0863    1.4640    1.3505 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0989    2.2211   -0.5102 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4464    2.7015   -0.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1206    0.2481    0.0378 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4247   -1.4147   -0.1862 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0803   -1.9825   -0.4669 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2713   -1.7405   -2.1745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3227   -1.9965   -1.9033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2805   -0.3937   -1.9420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9361    1.6957   -2.2454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2961   -0.6611   -0.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4149    1.2691   -0.9032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9339    1.0421    1.3624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9387    1.4619    1.9549 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 12 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
  4 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 28  2  1  0
 23  6  1  0
 22  9  1  0
 19 13  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  1
  4 34  1  1
  7 35  1  0
  8 36  1  0
 14 37  1  0
 15 38  1  0
 17 39  1  0
 18 40  1  0
 19 41  1  0
 20 42  1  0
 23 43  1  0
 24 44  1  6
 25 45  1  0
 26 46  1  1
 27 47  1  0
 28 48  1  6
 29 49  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.693  -0.989   2.933  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.136  -1.079   1.465  0.00  0.00           C+0
HETATM    3  O   UNK     0      -4.034  -1.422   0.740  0.00  0.00           O+0
HETATM    4  C   UNK     0      -3.421  -0.388   0.037  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.328  -0.930  -0.622  0.00  0.00           O+0
HETATM    6  C   UNK     0      -0.999  -0.583  -0.431  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.557   0.370   0.458  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.773   0.713   0.645  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.709   0.048  -0.117  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.037   0.394   0.073  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.399   1.275   0.900  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.979  -0.261  -0.681  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.371   0.069  -0.515  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.803   1.377  -0.443  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.144   1.661  -0.283  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.101   0.662  -0.189  0.00  0.00           C+0
HETATM   17  O   UNK     0       9.457   0.989  -0.027  0.00  0.00           O+0
HETATM   18  C   UNK     0       7.674  -0.635  -0.260  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.321  -0.929  -0.421  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.538  -1.219  -1.576  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.267  -1.507  -1.715  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.302  -0.919  -1.025  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.016  -1.240  -1.192  0.00  0.00           C+0
HETATM   24  C   UNK     0      -4.357   0.182  -1.020  0.00  0.00           C+0
HETATM   25  O   UNK     0      -3.936   1.484  -1.278  0.00  0.00           O+0
HETATM   26  C   UNK     0      -5.771   0.274  -0.465  0.00  0.00           C+0
HETATM   27  O   UNK     0      -6.428   1.382  -0.944  0.00  0.00           O+0
HETATM   28  C   UNK     0      -5.665   0.275   1.063  0.00  0.00           C+0
HETATM   29  O   UNK     0      -6.929   0.513   1.620  0.00  0.00           O+0
HETATM   30  H   UNK     0      -5.529  -1.157   3.621  0.00  0.00           H+0
HETATM   31  H   UNK     0      -4.223   0.014   3.037  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.924  -1.777   3.107  0.00  0.00           H+0
HETATM   33  H   UNK     0      -5.947  -1.839   1.382  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.112   0.371   0.752  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.274   0.906   1.069  0.00  0.00           H+0
HETATM   36  H   UNK     0       1.086   1.464   1.351  0.00  0.00           H+0
HETATM   37  H   UNK     0       5.099   2.221  -0.510  0.00  0.00           H+0
HETATM   38  H   UNK     0       7.446   2.701  -0.231  0.00  0.00           H+0
HETATM   39  H   UNK     0      10.121   0.248   0.038  0.00  0.00           H+0
HETATM   40  H   UNK     0       8.425  -1.415  -0.186  0.00  0.00           H+0
HETATM   41  H   UNK     0       6.080  -1.982  -0.467  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.271  -1.740  -2.175  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.323  -1.996  -1.903  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.281  -0.394  -1.942  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.936   1.696  -2.245  0.00  0.00           H+0
HETATM   46  H   UNK     0      -6.296  -0.661  -0.741  0.00  0.00           H+0
HETATM   47  H   UNK     0      -7.415   1.269  -0.903  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.934   1.042   1.362  0.00  0.00           H+0
HETATM   49  H   UNK     0      -6.939   1.462   1.955  0.00  0.00           H+0
CONECT    1    2   30   31   32                                             
CONECT    2    1    3   28   33                                             
CONECT    3    2    4                                                       
CONECT    4    3    5   24   34                                             
CONECT    5    4    6                                                       
CONECT    6    5    7   23                                                  
CONECT    7    6    8   35                                                  
CONECT    8    7    9   36                                                  
CONECT    9    8   10   22                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   20                                                  
CONECT   13   12   14   19                                                  
CONECT   14   13   15   37                                                  
CONECT   15   14   16   38                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   39                                                       
CONECT   18   16   19   40                                                  
CONECT   19   18   13   41                                                  
CONECT   20   12   21   42                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23    9                                                  
CONECT   23   22    6   43                                                  
CONECT   24    4   25   26   44                                             
CONECT   25   24   45                                                       
CONECT   26   24   27   28   46                                             
CONECT   27   26   47                                                       
CONECT   28   26   29    2   48                                             
CONECT   29   28   49                                                       
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    2                                                            
CONECT   34    4                                                            
CONECT   35    7                                                            
CONECT   36    8                                                            
CONECT   37   14                                                            
CONECT   38   15                                                            
CONECT   39   17                                                            
CONECT   40   18                                                            
CONECT   41   19                                                            
CONECT   42   20                                                            
CONECT   43   23                                                            
CONECT   44   24                                                            
CONECT   45   25                                                            
CONECT   46   26                                                            
CONECT   47   27                                                            
CONECT   48   28                                                            
CONECT   49   29                                                            
MASTER        0    0    0    0    0    0    0    0   49    0  104    0
END

RDKit          3D

49 52  0  0  0  0  0  0  0  0999 V2000
   -4.6929   -0.9889    2.9325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1361   -1.0786    1.4646 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0342   -1.4221    0.7404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4209   -0.3878    0.0372 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3276   -0.9299   -0.6223 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9993   -0.5830   -0.4314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5572    0.3697    0.4581 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7725    0.7127    0.6449 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7087    0.0482   -0.1174 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0367    0.3943    0.0727 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3993    1.2747    0.9000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9786   -0.2610   -0.6813 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3714    0.0689   -0.5146 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8032    1.3772   -0.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1444    1.6607   -0.2829 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1011    0.6616   -0.1889 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4567    0.9889   -0.0266 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6743   -0.6350   -0.2600 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3212   -0.9291   -0.4214 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5380   -1.2187   -1.5761 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2671   -1.5068   -1.7154 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3015   -0.9187   -1.0250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0159   -1.2398   -1.1916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3575    0.1816   -1.0196 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9358    1.4837   -1.2781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7715    0.2744   -0.4646 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4280    1.3820   -0.9439 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6647    0.2753    1.0630 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.9291    0.5126    1.6203 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5291   -1.1566    3.6207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2230    0.0137    3.0369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9242   -1.7766    3.1074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9465   -1.8394    1.3822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1125    0.3711    0.7515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2744    0.9061    1.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0863    1.4640    1.3505 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0989    2.2211   -0.5102 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4464    2.7015   -0.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1206    0.2481    0.0378 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4247   -1.4147   -0.1862 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0803   -1.9825   -0.4669 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2713   -1.7405   -2.1745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3227   -1.9965   -1.9033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2805   -0.3937   -1.9420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9361    1.6957   -2.2454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2961   -0.6611   -0.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4149    1.2691   -0.9032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9339    1.0421    1.3624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9387    1.4619    1.9549 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 12 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
  4 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 28  2  1  0
 23  6  1  0
 22  9  1  0
 19 13  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  1
  4 34  1  1
  7 35  1  0
  8 36  1  0
 14 37  1  0
 15 38  1  0
 17 39  1  0
 18 40  1  0
 19 41  1  0
 20 42  1  0
 23 43  1  0
 24 44  1  6
 25 45  1  0
 26 46  1  1
 27 47  1  0
 28 48  1  6
 29 49  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Daidzein 7-a-L-rhamnoside	Generator
Daidzein 7-α-L-rhamnoside	Generator

Chemical Formula

C₂₁H₂₀O₈

Average Mass

400.3830 Da

Monoisotopic Mass

400.11582 Da

IUPAC Name

3-(4-hydroxyphenyl)-7-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}-4H-chromen-4-one

Traditional Name

3-(4-hydroxyphenyl)-7-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}chromen-4-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@@H](OC2=CC3=C(C=C2)C(=O)C(=CO3)C2=CC=C(O)C=C2)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C21H20O8/c1-10-17(23)19(25)20(26)21(28-10)29-13-6-7-14-16(8-13)27-9-15(18(14)24)11-2-4-12(22)5-3-11/h2-10,17,19-23,25-26H,1H3/t10-,17-,19+,20+,21-/m0/s1

InChI Key

SZMVUVJWZJONPP-KIPYVINTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	110760
Streptomyces xanthophaeus	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.55	ALOGPS
logP	1.51	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	8.96	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	100.3 m³·mol⁻¹	ChemAxon
Polarizability	41.37 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA008602

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

22912992

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Daidzein 7-α-L-rhamnoside (NP0003502)

MOL for NP0003502 (Daidzein 7-α-L-rhamnoside)

3D MOL for NP0003502 (Daidzein 7-α-L-rhamnoside)

3D SDF for NP0003502 (Daidzein 7-α-L-rhamnoside)

3D-SDF for NP0003502 (Daidzein 7-α-L-rhamnoside)

PDB for NP0003502 (Daidzein 7-α-L-rhamnoside)

3D PDB for NP0003502 (Daidzein 7-α-L-rhamnoside)

SMILES for NP0003502 (Daidzein 7-α-L-rhamnoside)

INCHI for NP0003502 (Daidzein 7-α-L-rhamnoside)

Structure for NP0003502 (Daidzein 7-α-L-rhamnoside)

3D Structure for NP0003502 (Daidzein 7-α-L-rhamnoside)