NP-MRD: Showing NP-Card for Luminacin D (NP0003400)

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Record Information

Version

2.0

Created at

2020-12-09 00:40:09 UTC

Updated at

2021-07-15 16:46:20 UTC

NP-MRD ID

NP0003400

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Luminacin D

Provided By

NPAtlas

Description

3-(Butan-2-yl)-5-{2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]Octan-6-yl]-3-methylbutanoyl}-2,6-dihydroxybenzaldehyde belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group. Luminacin D is found in Streptomyces sp. and Streptomyces sp. Mer-VD1207. Based on a literature review very few articles have been published on 3-(butan-2-yl)-5-{2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]Octan-6-yl]-3-methylbutanoyl}-2,6-dihydroxybenzaldehyde.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117473D          

 66 68  0  0  0  0            999 V2000
   -3.8869    0.3854    2.7238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8505   -0.5500    2.0689 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3916   -0.0472    0.7547 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.0529    1.2820    1.0312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3612    0.1297   -0.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0419   -0.1896   -0.1085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0445   -0.0209   -1.0770 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7067   -0.3613   -0.6854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5128   -0.8841    0.4555 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5452   -0.1530   -1.4886 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8831    1.3119   -1.3929 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2056    1.7258    0.0437 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7245    1.9110   -2.4310 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5984   -1.0768   -0.9246 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8747   -1.0000   -1.6465 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1074   -0.7586   -0.8447 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6666    0.5147   -1.0258 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9986   -1.0391    0.6145 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1798    0.1415    1.4874 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1251   -0.9028    1.4523 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3112   -1.7267    2.7095 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6017   -1.3544    3.3805 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.7003   -3.0341    0.5004 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6871   -0.9486    0.4647 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1390    1.3864   -3.8180 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7022    0.6512   -1.5405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9858    1.0064   -1.8665 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5868    1.2239    2.0631 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.3814    0.9022    3.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4030   -1.5473    1.8524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6740   -0.7454    2.7872 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.1513    1.2585    1.0161 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3298   -0.4101   -2.5290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1547    1.8252   -1.5121 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2975    1.6611    0.1369 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9278    2.7869    0.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6339    1.1223    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3528    2.9794   -2.6093 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7934    2.0595   -2.2115 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5171    1.4085   -3.4060 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1681   -2.1180   -1.0773 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.7620    0.8986   -1.2726 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
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 13 48  1  0  0  0  0
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 24 63  1  0  0  0  0
 27 64  1  0  0  0  0
 29 65  1  0  0  0  0
 32 66  1  0  0  0  0
M  END

     RDKit          3D

 66 68  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242117473D          

 66 68  0  0  0  0            999 V2000
   -3.8869    0.3854    2.7238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8505   -0.5500    2.0689 C   0  0  1  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  7 26  2  0  0  0  0
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 31  5  1  0  0  0  0
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  1 33  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  2 36  1  0  0  0  0
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 32 66  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003400

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(C([H])=C(C(O[H])=C1C([H])=O)[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C(=O)[C@@]([H])(C([H])(C([H])([H])[H])C([H])([H])[H])[C@]1([H])O[C@@]([H])(O[H])[C@]2(O[C@@]2([H])C([H])([H])C([H])([H])[H])[C@]([H])(O[H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C24H34O8/c1-6-12(5)13-8-14(21(28)15(10-25)20(13)27)22(29)19(11(3)4)16-9-17(26)24(23(30)31-16)18(7-2)32-24/h8,10-12,16-19,23,26-28,30H,6-7,9H2,1-5H3/t12-,16-,17-,18+,19+,23-,24+/m1/s1

> <INCHI_KEY>
KJXVOXDWWAXZJY-QLYMQFIGSA-N

> <FORMULA>
C24H34O8

> <MOLECULAR_WEIGHT>
450.528

> <EXACT_MASS>
450.225368055

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
48.28967940727657

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(2R)-butan-2-yl]-5-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxybenzaldehyde

> <ALOGPS_LOGP>
2.81

> <JCHEM_LOGP>
5.271083818999998

> <ALOGPS_LOGS>
-2.93

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.032651595387364

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.310251142780348

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3808587790312536

> <JCHEM_POLAR_SURFACE_AREA>
136.82

> <JCHEM_REFRACTIVITY>
117.81139999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.33e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(2R)-butan-2-yl]-5-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxybenzaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 66 68  0  0  0  0  0  0  0  0999 V2000
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 32 66  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.887   0.385   2.724  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.851  -0.550   2.069  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.392  -0.047   0.755  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.053   1.282   1.031  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.361   0.130  -0.295  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.042  -0.190  -0.109  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.045  -0.021  -1.077  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.707  -0.361  -0.685  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.513  -0.884   0.456  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.545  -0.153  -1.489  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.883   1.312  -1.393  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.206   1.726   0.044  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.724   1.911  -2.431  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.598  -1.077  -0.925  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.875  -1.000  -1.647  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.107  -0.759  -0.845  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.667   0.515  -1.026  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.999  -1.039   0.615  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.180   0.142   1.487  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.125  -0.903   1.452  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.311  -1.727   2.709  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.602  -1.354   3.381  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.735  -1.741   0.962  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.700  -3.034   0.500  0.00  0.00           O+0
HETATM   25  O   UNK     0       1.687  -0.949   0.465  0.00  0.00           O+0
HETATM   26  C   UNK     0      -2.417   0.502  -2.309  0.00  0.00           C+0
HETATM   27  O   UNK     0      -1.473   0.682  -3.301  0.00  0.00           O+0
HETATM   28  C   UNK     0      -3.744   0.831  -2.522  0.00  0.00           C+0
HETATM   29  C   UNK     0      -4.139   1.386  -3.818  0.00  0.00           C+0
HETATM   30  O   UNK     0      -5.348   1.698  -4.045  0.00  0.00           O+0
HETATM   31  C   UNK     0      -4.702   0.651  -1.541  0.00  0.00           C+0
HETATM   32  O   UNK     0      -5.986   1.006  -1.867  0.00  0.00           O+0
HETATM   33  H   UNK     0      -3.587   1.224   2.063  0.00  0.00           H+0
HETATM   34  H   UNK     0      -2.983  -0.066   3.139  0.00  0.00           H+0
HETATM   35  H   UNK     0      -4.381   0.902   3.597  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.403  -1.547   1.852  0.00  0.00           H+0
HETATM   37  H   UNK     0      -5.674  -0.745   2.787  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.160  -0.779   0.353  0.00  0.00           H+0
HETATM   39  H   UNK     0      -5.616   2.095   0.384  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.725   1.599   2.070  0.00  0.00           H+0
HETATM   41  H   UNK     0      -7.151   1.258   1.016  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.771  -0.627   0.866  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.330  -0.410  -2.529  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.155   1.825  -1.512  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.297   1.661   0.137  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.928   2.787   0.205  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.634   1.122   0.748  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.353   2.979  -2.609  0.00  0.00           H+0
HETATM   49  H   UNK     0       2.793   2.059  -2.212  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.517   1.409  -3.406  0.00  0.00           H+0
HETATM   51  H   UNK     0       1.168  -2.118  -1.077  0.00  0.00           H+0
HETATM   52  H   UNK     0       3.059  -1.978  -2.233  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.856  -0.255  -2.475  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.914  -1.457  -1.235  0.00  0.00           H+0
HETATM   55  H   UNK     0       4.593   1.030  -0.168  0.00  0.00           H+0
HETATM   56  H   UNK     0       6.095  -0.570   1.017  0.00  0.00           H+0
HETATM   57  H   UNK     0       4.439  -1.471   3.380  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.238  -2.828   2.502  0.00  0.00           H+0
HETATM   59  H   UNK     0       6.385  -1.156   4.466  0.00  0.00           H+0
HETATM   60  H   UNK     0       7.342  -2.183   3.387  0.00  0.00           H+0
HETATM   61  H   UNK     0       6.995  -0.431   2.911  0.00  0.00           H+0
HETATM   62  H   UNK     0       2.582  -1.767   2.070  0.00  0.00           H+0
HETATM   63  H   UNK     0       3.593  -3.406   0.340  0.00  0.00           H+0
HETATM   64  H   UNK     0      -1.583   1.021  -4.213  0.00  0.00           H+0
HETATM   65  H   UNK     0      -3.447   1.554  -4.618  0.00  0.00           H+0
HETATM   66  H   UNK     0      -6.762   0.899  -1.273  0.00  0.00           H+0
CONECT    1    2   33   34   35                                             
CONECT    2    1    3   36   37                                             
CONECT    3    2    4    5   38                                             
CONECT    4    3   39   40   41                                             
CONECT    5    3    6   31                                                  
CONECT    6    5    7   42                                                  
CONECT    7    6    8   26                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   14   43                                             
CONECT   11   10   12   13   44                                             
CONECT   12   11   45   46   47                                             
CONECT   13   11   48   49   50                                             
CONECT   14   10   15   25   51                                             
CONECT   15   14   16   52   53                                             
CONECT   16   15   17   18   54                                             
CONECT   17   16   55                                                       
CONECT   18   16   19   23   20                                             
CONECT   19   18   20                                                       
CONECT   20   19   21   18   56                                             
CONECT   21   20   22   57   58                                             
CONECT   22   21   59   60   61                                             
CONECT   23   18   24   25   62                                             
CONECT   24   23   63                                                       
CONECT   25   23   14                                                       
CONECT   26    7   27   28                                                  
CONECT   27   26   64                                                       
CONECT   28   26   29   31                                                  
CONECT   29   28   30   65                                                  
CONECT   30   29                                                            
CONECT   31   28   32    5                                                  
CONECT   32   31   66                                                       
CONECT   33    1                                                            
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    2                                                            
CONECT   37    2                                                            
CONECT   38    3                                                            
CONECT   39    4                                                            
CONECT   40    4                                                            
CONECT   41    4                                                            
CONECT   42    6                                                            
CONECT   43   10                                                            
CONECT   44   11                                                            
CONECT   45   12                                                            
CONECT   46   12                                                            
CONECT   47   12                                                            
CONECT   48   13                                                            
CONECT   49   13                                                            
CONECT   50   13                                                            
CONECT   51   14                                                            
CONECT   52   15                                                            
CONECT   53   15                                                            
CONECT   54   16                                                            
CONECT   55   17                                                            
CONECT   56   20                                                            
CONECT   57   21                                                            
CONECT   58   21                                                            
CONECT   59   22                                                            
CONECT   60   22                                                            
CONECT   61   22                                                            
CONECT   62   23                                                            
CONECT   63   24                                                            
CONECT   64   27                                                            
CONECT   65   29                                                            
CONECT   66   32                                                            
MASTER        0    0    0    0    0    0    0    0   66    0  136    0
END

RDKit          3D

66 68  0  0  0  0  0  0  0  0999 V2000
   -3.8869    0.3854    2.7238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8505   -0.5500    2.0689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3916   -0.0472    0.7547 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.0529    1.2820    1.0312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3612    0.1297   -0.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0419   -0.1896   -0.1085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0445   -0.0209   -1.0770 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7067   -0.3613   -0.6854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5128   -0.8841    0.4555 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5452   -0.1530   -1.4886 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8831    1.3119   -1.3929 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2056    1.7258    0.0437 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7245    1.9110   -2.4310 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5984   -1.0768   -0.9246 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8747   -1.0000   -1.6465 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1074   -0.7586   -0.8447 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6666    0.5147   -1.0258 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9986   -1.0391    0.6145 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1798    0.1415    1.4874 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1251   -0.9028    1.4523 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3112   -1.7267    2.7095 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6017   -1.3544    3.3805 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7354   -1.7411    0.9621 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7003   -3.0341    0.5004 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6871   -0.9486    0.4647 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4171    0.5020   -2.3089 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4726    0.6817   -3.3013 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7437    0.8314   -2.5218 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1390    1.3864   -3.8180 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3477    1.6977   -4.0449 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7022    0.6512   -1.5405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9858    1.0064   -1.8665 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5868    1.2239    2.0631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9829   -0.0659    3.1394 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3814    0.9022    3.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4030   -1.5473    1.8524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6740   -0.7454    2.7872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1597   -0.7794    0.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6164    2.0947    0.3839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7248    1.5992    2.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1513    1.2585    1.0161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7708   -0.6270    0.8656 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3298   -0.4101   -2.5290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1547    1.8252   -1.5121 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2975    1.6611    0.1369 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9278    2.7869    0.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6339    1.1223    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3528    2.9794   -2.6093 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7934    2.0595   -2.2115 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5171    1.4085   -3.4060 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1681   -2.1180   -1.0773 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0593   -1.9785   -2.2326 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8560   -0.2545   -2.4746 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9136   -1.4574   -1.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5927    1.0300   -0.1679 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0945   -0.5696    1.0171 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4386   -1.4707    3.3795 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2380   -2.8282    2.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3853   -1.1564    4.4662 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3421   -2.1828    3.3872 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9953   -0.4309    2.9113 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5820   -1.7668    2.0703 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5928   -3.4061    0.3403 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5834    1.0209   -4.2131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4472    1.5535   -4.6183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7620    0.8986   -1.2726 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 10 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  1
 19 20  1  0
 20 21  1  0
 21 22  1  0
 18 23  1  0
 23 24  1  0
 23 25  1  0
  7 26  2  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 29 30  2  0
 28 31  2  0
 31 32  1  0
 31  5  1  0
 25 14  1  0
 20 18  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  2 36  1  0
  2 37  1  0
  3 38  1  6
  4 39  1  0
  4 40  1  0
  4 41  1  0
  6 42  1  0
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 12 46  1  0
 12 47  1  0
 13 48  1  0
 13 49  1  0
 13 50  1  0
 14 51  1  1
 15 52  1  0
 15 53  1  0
 16 54  1  6
 17 55  1  0
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 21 58  1  0
 22 59  1  0
 22 60  1  0
 22 61  1  0
 23 62  1  1
 24 63  1  0
 27 64  1  0
 29 65  1  0
 32 66  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₄H₃₄O₈

Average Mass

450.5280 Da

Monoisotopic Mass

450.22537 Da

IUPAC Name

3-[(2R)-butan-2-yl]-5-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxybenzaldehyde

Traditional Name

3-[(2R)-butan-2-yl]-5-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxybenzaldehyde

CAS Registry Number

Not Available

SMILES

CCC(C)C1=C(O)C(C=O)=C(O)C(=C1)C(=O)C(C(C)C)[C@H]1C[C@@H](O)[C@@]2(O[C@H]2CC)[C@H](O)O1

InChI Identifier

InChI=1S/C24H34O8/c1-6-12(5)13-8-14(21(28)15(10-25)20(13)27)22(29)19(11(3)4)16-9-17(26)24(23(30)31-16)18(7-2)32-24/h8,10-12,16-19,23,26-28,30H,6-7,9H2,1-5H3/t12?,16-,17-,18+,19?,23-,24+/m1/s1

InChI Key

KJXVOXDWWAXZJY-QLYMQFIGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	10966073
Streptomyces sp. Mer-VD1207	Bacteria	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Alkyl-phenylketones

Alternative Parents

Substituents

Alkyl-phenylketone
Butyrophenone
Phenylpropane
Hydroxybenzaldehyde
Benzaldehyde
Benzoyl
Resorcinol
Aryl alkyl ketone
Phenol
Aryl-aldehyde
Oxane
Monocyclic benzene moiety
Benzenoid
Vinylogous acid
Secondary alcohol
Hemiacetal
Ether
Oxirane
Dialkyl ether
Organoheterocyclic compound
Oxacycle
Alcohol
Hydrocarbon derivative
Organic oxide
Aldehyde
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.81	ALOGPS
logP	5.27	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	7.31	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	136.82 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	117.81 m³·mol⁻¹	ChemAxon
Polarizability	48.29 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA004441

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78436759

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139584321

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Luminacin D (NP0003400)

MOL for NP0003400 (Luminacin D)

3D MOL for NP0003400 (Luminacin D)

3D SDF for NP0003400 (Luminacin D)

3D-SDF for NP0003400 (Luminacin D)

PDB for NP0003400 (Luminacin D)

3D PDB for NP0003400 (Luminacin D)

SMILES for NP0003400 (Luminacin D)

INCHI for NP0003400 (Luminacin D)

Structure for NP0003400 (Luminacin D)

3D Structure for NP0003400 (Luminacin D)