NP-MRD: Showing NP-Card for Luminacin C1 (NP0003398)

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Record Information

Version

1.0

Created at

2020-12-09 00:40:05 UTC

Updated at

2021-07-15 16:46:19 UTC

NP-MRD ID

NP0003398

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Luminacin C1

Provided By

NPAtlas

Description

Luminacin C1 is found in Streptomyces sp. It was first documented in 2000 (PMID: 10966073). Based on a literature review very few articles have been published on 3-{2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]Octan-6-yl]-3-methylbutanoyl}-2,6-dihydroxy-5-(1-methoxy-2-methylpropyl)benzaldehyde.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117473D          

 70 72  0  0  0  0            999 V2000
    7.2184    2.4607    0.2198 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4398    1.2277    0.6851 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242117473D          

 70 72  0  0  0  0            999 V2000
    7.2184    2.4607    0.2198 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4398    1.2277    0.6851 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6113    0.7554   -0.4528 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6669    1.8523   -0.8507 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1745    0.4992   -0.4139 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5950   -0.2236   -1.5534 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8075    0.3863   -2.7939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1179   -0.5966   -1.4171 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9653   -1.0406    0.0205 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7861   -1.9064    0.3153 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5480   -1.4643    0.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0656   -2.1511   -0.9902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4449   -0.4727    0.5537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6602   -0.1989   -0.0954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5188    0.7937    0.2676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7499    1.1733   -0.5028 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0291    2.5115   -0.3395 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6395    3.3181   -1.3692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8552    0.2301   -0.5319 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.9862    0.6719   -1.4108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6085   -1.2062   -0.6561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1507    1.5926    1.3577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0276    2.5836    1.6779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9813    1.3761    2.0360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6525    2.2225    3.1478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6272    2.1168    3.8210 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1263    0.3353    1.6341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0039    0.1153    2.3066 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0942   -3.2805   -0.3390 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0302   -4.2535   -0.1421 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3288   -3.8230    0.3348 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2174   -0.0708    0.9046 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3852    0.6029    0.8422 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1775    0.0713    1.8899 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8156    2.8179    1.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4319    3.2437    0.0130 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.1837    0.3979   -1.3254 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1357   -1.2170   -1.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.9218   -1.7394    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8849   -2.1913    1.4252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8662   -0.7914   -0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3254    1.1555   -1.5834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1268    3.0039   -2.3089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8898    4.4056   -1.2556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5316    3.1899   -1.6019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4071    0.3593    0.5460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9432    0.7032   -0.8140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8097    1.6985   -1.7465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1285   -0.0360   -2.2827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8280   -1.6759   -1.6611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6424   -1.5998   -0.3220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3556   -1.7974    0.0336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9031    3.2188    2.4090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3276    3.0133    3.4407 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4389    0.4912    3.0467 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3280   -3.1195   -1.4008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7805   -3.9618    0.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4807   -4.4235   -1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3661   -5.2547    0.1693 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2303   -3.7377   -0.2992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5307   -3.3667    1.3018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1926   -4.9274    0.5302 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2040    1.6585    1.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7579    0.4019    2.7232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
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 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
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 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
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 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
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 10 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
  9 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
  5  3  1  0  0  0  0
 27 13  1  0  0  0  0
 33  5  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  2 38  1  0  0  0  0
  2 39  1  0  0  0  0
  3 40  1  6  0  0  0
  6 41  1  6  0  0  0
  7 42  1  0  0  0  0
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 21 58  1  0  0  0  0
 23 59  1  0  0  0  0
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 31 67  1  0  0  0  0
 31 68  1  0  0  0  0
 33 69  1  1  0  0  0
 34 70  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003398

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(C([H])=O)C(O[H])=C(C([H])=C1C(=O)[C@@]([H])(C([H])(C([H])([H])[H])C([H])([H])[H])[C@]1([H])O[C@@]([H])(O[H])[C@]2(O[C@@]2([H])C([H])([H])C([H])([H])[H])[C@]([H])(O[H])C1([H])[H])[C@]([H])(OC([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H36O9/c1-7-18-25(34-18)17(27)9-16(33-24(25)31)19(11(2)3)22(30)13-8-14(23(32-6)12(4)5)21(29)15(10-26)20(13)28/h8,10-12,16-19,23-24,27-29,31H,7,9H2,1-6H3/t16-,17-,18+,19+,23-,24-,25+/m1/s1

> <INCHI_KEY>
RZDDSTARNVCULQ-MHLQYBCNSA-N

> <FORMULA>
C25H36O9

> <MOLECULAR_WEIGHT>
480.554

> <EXACT_MASS>
480.235932739

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
51.500070472217544

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxy-5-[(1R)-1-methoxy-2-methylpropyl]benzaldehyde

> <ALOGPS_LOGP>
2.59

> <JCHEM_LOGP>
4.761352985666668

> <ALOGPS_LOGS>
-2.94

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.661625501138062

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.475475853893383

> <JCHEM_PKA_STRONGEST_BASIC>
-3.380858779031283

> <JCHEM_POLAR_SURFACE_AREA>
146.05

> <JCHEM_REFRACTIVITY>
124.00109999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.56e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxy-5-[(1R)-1-methoxy-2-methylpropyl]benzaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 70 72  0  0  0  0  0  0  0  0999 V2000
    7.2184    2.4607    0.2198 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4398    1.2277    0.6851 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6113    0.7554   -0.4528 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6669    1.8523   -0.8507 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1745    0.4992   -0.4139 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5950   -0.2236   -1.5534 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8075    0.3863   -2.7939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1179   -0.5966   -1.4171 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9653   -1.0406    0.0205 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7861   -1.9064    0.3153 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5480   -1.4643    0.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0656   -2.1511   -0.9902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4449   -0.4727    0.5537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6602   -0.1989   -0.0954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5188    0.7937    0.2676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7499    1.1733   -0.5028 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0291    2.5115   -0.3395 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6395    3.3181   -1.3692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8552    0.2301   -0.5319 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.9862    0.6719   -1.4108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6085   -1.2062   -0.6561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1507    1.5926    1.3577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0276    2.5836    1.6779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9813    1.3761    2.0360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6525    2.2225    3.1478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6272    2.1168    3.8210 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1263    0.3353    1.6341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0039    0.1153    2.3066 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0942   -3.2805   -0.3390 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0302   -4.2535   -0.1421 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3288   -3.8230    0.3348 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2174   -0.0708    0.9046 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3852    0.6029    0.8422 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1775    0.0713    1.8899 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8156    2.8179    1.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4319    3.2437    0.0130 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7862    2.2851   -0.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8881    1.5762    1.5754 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1894    0.4376    0.9454 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1837    0.3979   -1.3254 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1357   -1.2170   -1.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7567    0.6943   -2.7905 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9390   -1.4143   -2.1162 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4766    0.2928   -1.6312 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9218   -1.7394    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8849   -2.1913    1.4252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8662   -0.7914   -0.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3254    1.1555   -1.5834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1268    3.0039   -2.3089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8898    4.4056   -1.2556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5316    3.1899   -1.6019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4071    0.3593    0.5460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9432    0.7032   -0.8140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8097    1.6985   -1.7465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1285   -0.0360   -2.2827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8280   -1.6759   -1.6611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6424   -1.5998   -0.3220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3556   -1.7974    0.0336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9031    3.2188    2.4090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3276    3.0133    3.4407 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4389    0.4912    3.0467 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3280   -3.1195   -1.4008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7805   -3.9618    0.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4807   -4.4235   -1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3661   -5.2547    0.1693 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2303   -3.7377   -0.2992 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5307   -3.3667    1.3018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1926   -4.9274    0.5302 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2040    1.6585    1.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7579    0.4019    2.7232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  5  4  1  6
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 16 19  1  0
 19 20  1  0
 19 21  1  0
 15 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  2  0
 24 27  2  0
 27 28  1  0
 10 29  1  0
 29 30  1  0
 29 31  1  0
  9 32  1  0
 32 33  1  0
 33 34  1  0
  5  3  1  0
 27 13  1  0
 33  5  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  2 38  1  0
  2 39  1  0
  3 40  1  6
  6 41  1  6
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  1
 10 46  1  1
 14 47  1  0
 16 48  1  6
 18 49  1  0
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 18 51  1  0
 19 52  1  1
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 21 56  1  0
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 23 59  1  0
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 29 62  1  6
 30 63  1  0
 30 64  1  0
 30 65  1  0
 31 66  1  0
 31 67  1  0
 31 68  1  0
 33 69  1  1
 34 70  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       7.218   2.461   0.220  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.440   1.228   0.685  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.611   0.755  -0.453  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.667   1.852  -0.851  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.175   0.499  -0.414  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.595  -0.224  -1.553  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.808   0.386  -2.794  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.118  -0.597  -1.417  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.965  -1.041   0.021  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.786  -1.906   0.315  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.548  -1.464   0.029  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.066  -2.151  -0.990  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.445  -0.473   0.554  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.660  -0.199  -0.095  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.519   0.794   0.268  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.750   1.173  -0.503  0.00  0.00           C+0
HETATM   17  O   UNK     0      -5.029   2.511  -0.340  0.00  0.00           O+0
HETATM   18  C   UNK     0      -4.640   3.318  -1.369  0.00  0.00           C+0
HETATM   19  C   UNK     0      -5.855   0.230  -0.532  0.00  0.00           C+0
HETATM   20  C   UNK     0      -6.986   0.672  -1.411  0.00  0.00           C+0
HETATM   21  C   UNK     0      -5.609  -1.206  -0.656  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.151   1.593   1.358  0.00  0.00           C+0
HETATM   23  O   UNK     0      -4.028   2.584   1.678  0.00  0.00           O+0
HETATM   24  C   UNK     0      -1.981   1.376   2.036  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.653   2.223   3.148  0.00  0.00           C+0
HETATM   26  O   UNK     0      -0.627   2.117   3.821  0.00  0.00           O+0
HETATM   27  C   UNK     0      -1.126   0.335   1.634  0.00  0.00           C+0
HETATM   28  O   UNK     0       0.004   0.115   2.307  0.00  0.00           O+0
HETATM   29  C   UNK     0       1.094  -3.281  -0.339  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.030  -4.253  -0.142  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.329  -3.823   0.335  0.00  0.00           C+0
HETATM   32  O   UNK     0       2.217  -0.071   0.905  0.00  0.00           O+0
HETATM   33  C   UNK     0       3.385   0.603   0.842  0.00  0.00           C+0
HETATM   34  O   UNK     0       4.178   0.071   1.890  0.00  0.00           O+0
HETATM   35  H   UNK     0       7.816   2.818   1.088  0.00  0.00           H+0
HETATM   36  H   UNK     0       6.432   3.244   0.013  0.00  0.00           H+0
HETATM   37  H   UNK     0       7.786   2.285  -0.691  0.00  0.00           H+0
HETATM   38  H   UNK     0       5.888   1.576   1.575  0.00  0.00           H+0
HETATM   39  H   UNK     0       7.189   0.438   0.945  0.00  0.00           H+0
HETATM   40  H   UNK     0       6.184   0.398  -1.325  0.00  0.00           H+0
HETATM   41  H   UNK     0       4.136  -1.217  -1.625  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.757   0.694  -2.791  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.939  -1.414  -2.116  0.00  0.00           H+0
HETATM   44  H   UNK     0       1.477   0.293  -1.631  0.00  0.00           H+0
HETATM   45  H   UNK     0       2.922  -1.739   0.130  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.885  -2.191   1.425  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.866  -0.791  -0.967  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.325   1.155  -1.583  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.127   3.004  -2.309  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.890   4.406  -1.256  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.532   3.190  -1.602  0.00  0.00           H+0
HETATM   52  H   UNK     0      -6.407   0.359   0.546  0.00  0.00           H+0
HETATM   53  H   UNK     0      -7.943   0.703  -0.814  0.00  0.00           H+0
HETATM   54  H   UNK     0      -6.810   1.698  -1.746  0.00  0.00           H+0
HETATM   55  H   UNK     0      -7.128  -0.036  -2.283  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.828  -1.676  -1.661  0.00  0.00           H+0
HETATM   57  H   UNK     0      -4.642  -1.600  -0.322  0.00  0.00           H+0
HETATM   58  H   UNK     0      -6.356  -1.797   0.034  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.903   3.219   2.409  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.328   3.013   3.441  0.00  0.00           H+0
HETATM   61  H   UNK     0       0.439   0.491   3.047  0.00  0.00           H+0
HETATM   62  H   UNK     0       1.328  -3.119  -1.401  0.00  0.00           H+0
HETATM   63  H   UNK     0      -0.781  -3.962   0.591  0.00  0.00           H+0
HETATM   64  H   UNK     0      -0.481  -4.423  -1.162  0.00  0.00           H+0
HETATM   65  H   UNK     0       0.366  -5.255   0.169  0.00  0.00           H+0
HETATM   66  H   UNK     0       3.230  -3.738  -0.299  0.00  0.00           H+0
HETATM   67  H   UNK     0       2.531  -3.367   1.302  0.00  0.00           H+0
HETATM   68  H   UNK     0       2.193  -4.927   0.530  0.00  0.00           H+0
HETATM   69  H   UNK     0       3.204   1.659   1.150  0.00  0.00           H+0
HETATM   70  H   UNK     0       3.758   0.402   2.723  0.00  0.00           H+0
CONECT    1    2   35   36   37                                             
CONECT    2    1    3   38   39                                             
CONECT    3    2    4    5   40                                             
CONECT    4    3    5                                                       
CONECT    5    4    6    3   33                                             
CONECT    6    5    7    8   41                                             
CONECT    7    6   42                                                       
CONECT    8    6    9   43   44                                             
CONECT    9    8   10   32   45                                             
CONECT   10    9   11   29   46                                             
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   27                                                  
CONECT   14   13   15   47                                                  
CONECT   15   14   16   22                                                  
CONECT   16   15   17   19   48                                             
CONECT   17   16   18                                                       
CONECT   18   17   49   50   51                                             
CONECT   19   16   20   21   52                                             
CONECT   20   19   53   54   55                                             
CONECT   21   19   56   57   58                                             
CONECT   22   15   23   24                                                  
CONECT   23   22   59                                                       
CONECT   24   22   25   27                                                  
CONECT   25   24   26   60                                                  
CONECT   26   25                                                            
CONECT   27   24   28   13                                                  
CONECT   28   27   61                                                       
CONECT   29   10   30   31   62                                             
CONECT   30   29   63   64   65                                             
CONECT   31   29   66   67   68                                             
CONECT   32    9   33                                                       
CONECT   33   32   34    5   69                                             
CONECT   34   33   70                                                       
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    2                                                            
CONECT   39    2                                                            
CONECT   40    3                                                            
CONECT   41    6                                                            
CONECT   42    7                                                            
CONECT   43    8                                                            
CONECT   44    8                                                            
CONECT   45    9                                                            
CONECT   46   10                                                            
CONECT   47   14                                                            
CONECT   48   16                                                            
CONECT   49   18                                                            
CONECT   50   18                                                            
CONECT   51   18                                                            
CONECT   52   19                                                            
CONECT   53   20                                                            
CONECT   54   20                                                            
CONECT   55   20                                                            
CONECT   56   21                                                            
CONECT   57   21                                                            
CONECT   58   21                                                            
CONECT   59   23                                                            
CONECT   60   25                                                            
CONECT   61   28                                                            
CONECT   62   29                                                            
CONECT   63   30                                                            
CONECT   64   30                                                            
CONECT   65   30                                                            
CONECT   66   31                                                            
CONECT   67   31                                                            
CONECT   68   31                                                            
CONECT   69   33                                                            
CONECT   70   34                                                            
MASTER        0    0    0    0    0    0    0    0   70    0  144    0
END

RDKit          3D

70 72  0  0  0  0  0  0  0  0999 V2000
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    6.4398    1.2277    0.6851 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7861   -1.9064    0.3153 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5480   -1.4643    0.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.7805   -3.9618    0.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3661   -5.2547    0.1693 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2303   -3.7377   -0.2992 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2040    1.6585    1.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7579    0.4019    2.7232 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
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 33  5  1  0
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  9 45  1  1
 10 46  1  1
 14 47  1  0
 16 48  1  6
 18 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  1
 20 53  1  0
 20 54  1  0
 20 55  1  0
 21 56  1  0
 21 57  1  0
 21 58  1  0
 23 59  1  0
 25 60  1  0
 28 61  1  0
 29 62  1  6
 30 63  1  0
 30 64  1  0
 30 65  1  0
 31 66  1  0
 31 67  1  0
 31 68  1  0
 33 69  1  1
 34 70  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₅H₃₆O₉

Average Mass

480.5540 Da

Monoisotopic Mass

480.23593 Da

IUPAC Name

3-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxy-5-[(1R)-1-methoxy-2-methylpropyl]benzaldehyde

Traditional Name

3-[(2S)-2-[(2S,3S,4R,6R,8R)-2-ethyl-4,8-dihydroxy-1,5-dioxaspiro[2.5]octan-6-yl]-3-methylbutanoyl]-2,6-dihydroxy-5-[(1R)-1-methoxy-2-methylpropyl]benzaldehyde

CAS Registry Number

Not Available

SMILES

CC[C@@H]1O[C@@]11[C@H](O)C[C@@H](O[C@H]1O)C(C(C)C)C(=O)C1=CC(C(OC)C(C)C)=C(O)C(C=O)=C1O

InChI Identifier

InChI=1S/C25H36O9/c1-7-18-25(34-18)17(27)9-16(33-24(25)31)19(11(2)3)22(30)13-8-14(23(32-6)12(4)5)21(29)15(10-26)20(13)28/h8,10-12,16-19,23-24,27-29,31H,7,9H2,1-6H3/t16-,17-,18+,19?,23?,24-,25+/m1/s1

InChI Key

RZDDSTARNVCULQ-MHLQYBCNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	10966073

Species Where Detected

Species Name	Source	Reference
Streptomyces sp. Mer-VD1207	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.59	ALOGPS
logP	4.76	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	6.48	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	146.05 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	124 m³·mol⁻¹	ChemAxon
Polarizability	51.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA014311

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437976

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139587070

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Naruse N, Kageyama-Kawase R, Funahashi Y, Wakabayashi T: Luminacins: a family of capillary tube formation inhibitors from Streptomyces sp. I. Taxomony, fermentation, isolation, physico-chemical properties and structure elucidation. J Antibiot (Tokyo). 2000 Jun;53(6):579-90. doi: 10.7164/antibiotics.53.579. [PubMed:10966073 ]

Showing NP-Card for Luminacin C1 (NP0003398)

MOL for NP0003398 (Luminacin C1)

3D MOL for NP0003398 (Luminacin C1)

3D SDF for NP0003398 (Luminacin C1)

3D-SDF for NP0003398 (Luminacin C1)

PDB for NP0003398 (Luminacin C1)

3D PDB for NP0003398 (Luminacin C1)

SMILES for NP0003398 (Luminacin C1)

INCHI for NP0003398 (Luminacin C1)

Structure for NP0003398 (Luminacin C1)

3D Structure for NP0003398 (Luminacin C1)