Record Information |
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Version | 2.0 |
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Created at | 2020-12-09 00:38:20 UTC |
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Updated at | 2021-07-15 16:46:12 UTC |
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NP-MRD ID | NP0003352 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | Micacocidin |
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Provided By | NPAtlas |
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Description | Micacocidin is found in Pseudomonas and Pseudomonas sp. 57-250. Micacocidin was first documented in 2000 (PMID: 10908118). Based on a literature review very few articles have been published on 2-(1-hydroxy-1-{2-[2-(2-hydroxy-6-pentylphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-3-methyl-1,3-thiazolidin-4-yl}-2-methylpropan-2-yl)-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid (PMID: 31293678) (PMID: 12950179) (PMID: 11714234) (PMID: 30533677) (PMID: 26507693) (PMID: 24202877). |
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Structure | [H]OC(=O)[C@@]1(N=C(SC1([H])[H])C(C([H])([H])[H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]1([H])N(C([H])([H])[H])[C@@]([H])(SC1([H])[H])[C@@]1([H])N=C(SC1([H])[H])C1=C(O[H])C([H])=C([H])C([H])=C1C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C([H])([H])[H] InChI=1S/C27H39N3O4S3/c1-6-7-8-10-16-11-9-12-19(31)20(16)22-28-17(13-35-22)23-30(5)18(14-36-23)21(32)26(2,3)24-29-27(4,15-37-24)25(33)34/h9,11-12,17-18,21,23,31-32H,6-8,10,13-15H2,1-5H3,(H,33,34)/t17-,18-,21-,23-,27+/m0/s1 |
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Synonyms | Value | Source |
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2-(1-Hydroxy-1-{2-[2-(2-hydroxy-6-pentylphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-3-methyl-1,3-thiazolidin-4-yl}-2-methylpropan-2-yl)-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylate | Generator |
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Chemical Formula | C27H39N3O4S3 |
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Average Mass | 565.8100 Da |
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Monoisotopic Mass | 565.21027 Da |
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IUPAC Name | (4S)-2-[(1R)-1-hydroxy-1-[(2S,4R)-2-[(4S)-2-(2-hydroxy-6-pentylphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-3-methyl-1,3-thiazolidin-4-yl]-2-methylpropan-2-yl]-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid |
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Traditional Name | (4S)-2-[(1R)-1-hydroxy-1-[(2S,4R)-2-[(4S)-2-(2-hydroxy-6-pentylphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-3-methyl-1,3-thiazolidin-4-yl]-2-methylpropan-2-yl]-4-methyl-5H-1,3-thiazole-4-carboxylic acid |
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CAS Registry Number | Not Available |
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SMILES | CCCCCC1=C(C2=NC(CS2)C2SCC(C(O)C(C)(C)C3=NC(C)(CS3)C(O)=O)N2C)C(O)=CC=C1 |
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InChI Identifier | InChI=1S/C27H39N3O4S3/c1-6-7-8-10-16-11-9-12-19(31)20(16)22-28-17(13-35-22)23-30(5)18(14-36-23)21(32)26(2,3)24-29-27(4,15-37-24)25(33)34/h9,11-12,17-18,21,23,31-32H,6-8,10,13-15H2,1-5H3,(H,33,34) |
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InChI Key | GGWOUCUSNYVHOC-UHFFFAOYSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | Species Name | Source | Reference |
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Pseudomonas | NPAtlas | | Pseudomonas sp. 57-250 | Bacteria | |
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Species Where Detected | |
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Chemical Taxonomy |
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Classification | Not classified |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Kobayashi S, Ikenishi Y, Takinami Y, Takema M, Sun WY, Ino A, Hayase Y: Preparation and antimicrobial activity of micacocidin. J Antibiot (Tokyo). 2000 May;53(5):532-9. doi: 10.7164/antibiotics.53.532. [PubMed:10908118 ]
- Diettrich J, Kage H, Nett M: Genomics-inspired discovery of massiliachelin, an agrochelin epimer from Massilia sp. NR 4-1. Beilstein J Org Chem. 2019 Jun 13;15:1298-1303. doi: 10.3762/bjoc.15.128. eCollection 2019. [PubMed:31293678 ]
- Patel HM, Tao J, Walsh CT: Epimerization of an L-cysteinyl to a D-cysteinyl residue during thiazoline ring formation in siderophore chain elongation by pyochelin synthetase from Pseudomonas aeruginosa. Biochemistry. 2003 Sep 9;42(35):10514-27. doi: 10.1021/bi034840c. [PubMed:12950179 ]
- Ino A, Kobayashi S, Ueda K, Hidaka S, Hayase Y: Structure-activity relationship of the antimycoplasma antibiotic micacocidin--a preliminary study. J Antibiot (Tokyo). 2001 Sep;54(9):753-6. doi: 10.7164/antibiotics.54.753. [PubMed:11714234 ]
- Montecillo AD, Raymundo AK, Papa IA, Aquino GMB, Jacildo AJ, Stothard P, Rosana ARR: Near-Complete Genome Sequence of Ralstonia solanacearum T523, a Phylotype I Tomato Phytopathogen Isolated from the Philippines. Microbiol Resour Announc. 2018 Sep 27;7(12). pii: MRA01048-18. doi: 10.1128/MRA.01048-18. eCollection 2018 Sep. [PubMed:30533677 ]
- Kage H, Riva E, Parascandolo JS, Kreutzer MF, Tosin M, Nett M: Chemical chain termination resolves the timing of ketoreduction in a partially reducing iterative type I polyketide synthase. Org Biomol Chem. 2015 Dec 21;13(47):11414-7. doi: 10.1039/c5ob02009c. Epub 2015 Oct 28. [PubMed:26507693 ]
- Kreutzer MF, Kage H, Herrmann J, Pauly J, Hermenau R, Muller R, Hoffmeister D, Nett M: Precursor-directed biosynthesis of micacocidin derivatives with activity against Mycoplasma pneumoniae. Org Biomol Chem. 2014 Jan 7;12(1):113-8. doi: 10.1039/c3ob41839a. Epub 2013 Nov 8. [PubMed:24202877 ]
- Kage H, Kreutzer MF, Wackler B, Hoffmeister D, Nett M: An iterative type I polyketide synthase initiates the biosynthesis of the antimycoplasma agent micacocidin. Chem Biol. 2013 Jun 20;20(6):764-71. doi: 10.1016/j.chembiol.2013.04.010. [PubMed:23790487 ]
- Kreutzer MF, Kage H, Gebhardt P, Wackler B, Saluz HP, Hoffmeister D, Nett M: Biosynthesis of a complex yersiniabactin-like natural product via the mic locus in phytopathogen Ralstonia solanacearum. Appl Environ Microbiol. 2011 Sep;77(17):6117-24. doi: 10.1128/AEM.05198-11. Epub 2011 Jul 1. [PubMed:21724891 ]
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