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Record Information
Version1.0
Created at2020-12-09 00:32:14 UTC
Updated at2021-07-15 16:45:53 UTC
NP-MRD IDNP0003240
Secondary Accession NumbersNone
Natural Product Identification
Common NameMalevamide A
Provided ByNPAtlasNPAtlas Logo
Description(2S,3S)-2-{[(2R)-1-hydroxy-2-{2-[(1-hydroxy-2-{N-methyl-1-[(2S)-1-(2-methylhexanoyl)pyrrolidin-2-yl]formamido}-3-phenylpropylidene)amino]-N-methylacetamido}-3-methylbutylidene]amino}-N-[({1-[(2R)-2-(methoxycarbonyl)pyrrolidin-1-yl]-1-oxo-3-phenylpropan-2-yl}(methyl)carbamoyl)methyl]-3-methylpentanimidic acid belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Malevamide A is found in Symploca and Symplocos laeteviridis. It was first documented in 2000 (PMID: 10785414). Based on a literature review very few articles have been published on (2S,3S)-2-{[(2R)-1-hydroxy-2-{2-[(1-hydroxy-2-{N-methyl-1-[(2S)-1-(2-methylhexanoyl)pyrrolidin-2-yl]formamido}-3-phenylpropylidene)amino]-N-methylacetamido}-3-methylbutylidene]amino}-N-[({1-[(2R)-2-(methoxycarbonyl)pyrrolidin-1-yl]-1-oxo-3-phenylpropan-2-yl}(methyl)carbamoyl)methyl]-3-methylpentanimidic acid.
Structure
Thumb
Synonyms
ValueSource
(2S,3S)-2-{[(2R)-1-hydroxy-2-{2-[(1-hydroxy-2-{n-methyl-1-[(2S)-1-(2-methylhexanoyl)pyrrolidin-2-yl]formamido}-3-phenylpropylidene)amino]-N-methylacetamido}-3-methylbutylidene]amino}-N-[({1-[(2R)-2-(methoxycarbonyl)pyrrolidin-1-yl]-1-oxo-3-phenylpropan-2-yl}(methyl)carbamoyl)methyl]-3-methylpentanimidateGenerator
Chemical FormulaNot Available
Average MassNot Available
Monoisotopic MassNot Available
IUPAC Namemethyl (2R)-1-[(2R)-2-{N-methyl-2-[(2S,3S)-3-methyl-2-[(2R)-3-methyl-2-{N-methyl-2-[(2R)-2-{N-methyl-1-[(2S)-1-[(2R)-2-methylhexanoyl]pyrrolidin-2-yl]formamido}-3-phenylpropanamido]acetamido}butanamido]pentanamido]acetamido}-3-phenylpropanoyl]pyrrolidine-2-carboxylate
Traditional Namemethyl (2R)-1-[(2R)-2-{N-methyl-2-[(2S,3S)-3-methyl-2-[(2R)-3-methyl-2-{N-methyl-2-[(2R)-2-{N-methyl-1-[(2S)-1-[(2R)-2-methylhexanoyl]pyrrolidin-2-yl]formamido}-3-phenylpropanamido]acetamido}butanamido]pentanamido]acetamido}-3-phenylpropanoyl]pyrrolidine-2-carboxylate
CAS Registry NumberNot Available
SMILES
CCCCC(C)C(=O)N1CCC[C@H]1C(=O)N(C)C(CC1=CC=CC=C1)C(=O)NCC(=O)N(C)[C@H](C(C)C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)NCC(=O)N(C)C(CC1=CC=CC=C1)C(=O)N1CCC[C@@H]1C(=O)OC
InChI Identifier
InChI=1S/C54H80N8O10/c1-11-13-22-37(6)51(68)61-29-20-27-40(61)52(69)59(8)42(31-38-23-16-14-17-24-38)48(65)55-34-45(64)60(9)47(35(3)4)50(67)57-46(36(5)12-2)49(66)56-33-44(63)58(7)43(32-39-25-18-15-19-26-39)53(70)62-30-21-28-41(62)54(71)72-10/h14-19,23-26,35-37,40-43,46-47H,11-13,20-22,27-34H2,1-10H3,(H,55,65)(H,56,66)(H,57,67)/t36-,37?,40-,41+,42?,43?,46-,47+/m0/s1
InChI KeySBBWNCCDZGYIDQ-ZDQPJKKJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
SymplocaNPAtlas
Symplocos laeteviridisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentOligopeptides
Alternative Parents
Substituents
  • Alpha-oligopeptide
  • Phenylalanine or derivatives
  • Isoleucine or derivatives
  • Alpha-amino acid ester
  • Valine or derivatives
  • Proline or derivatives
  • N-acyl-alpha amino acid or derivatives
  • N-acyl-alpha-amino acid
  • Alpha-amino acid amide
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Amphetamine or derivatives
  • N-acylpyrrolidine
  • Pyrrolidine carboxylic acid
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • N-acyl-amine
  • Monocyclic benzene moiety
  • Fatty acyl
  • Fatty amide
  • Benzenoid
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Methyl ester
  • Carboxamide group
  • Carboxylic acid ester
  • Secondary carboxylic acid amide
  • Organoheterocyclic compound
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Organic oxide
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.02ALOGPS
logP3.82ChemAxon
logS-5.3ALOGPS
pKa (Strongest Acidic)12.02ChemAxon
pKa (Strongest Basic)-0.58ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area215.15 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity271.71 m³·mol⁻¹ChemAxon
Polarizability110.49 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA002853
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24686864
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44583745
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Horgen FD, Yoshida WY, Scheuer PJ: Malevamides A-C, new depsipeptides from the marine cyanobacterium Symploca laete-viridis. J Nat Prod. 2000 Apr;63(4):461-7. doi: 10.1021/np990449+. [PubMed:10785414 ]