NP-MRD: Showing NP-Card for TMC-86A (NP0003170)

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Record Information

Version

2.0

Created at

2020-12-09 00:31:28 UTC

Updated at

2021-07-15 16:45:42 UTC

NP-MRD ID

NP0003170

Secondary Accession Numbers

None

Natural Product Identification

Common Name

TMC-86A

Provided By

NPAtlas

Description

TMC-86A is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. TMC-86A is found in Streptomyces and Streptomyces sp. TC 1084. TMC-86A was first documented in 1999 (PMID: 10695669). Based on a literature review very few articles have been published on TMC-86A (PMID: 10724010) (PMID: 26999044).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117453D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242117453D          

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  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
 20 18  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 20  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
  3 27  1  0  0  0  0
  3 28  1  0  0  0  0
  3 29  1  0  0  0  0
  4 30  1  0  0  0  0
  4 31  1  0  0  0  0
  5 32  1  6  0  0  0
  6 33  1  0  0  0  0
  9 34  1  6  0  0  0
 10 35  1  0  0  0  0
 10 36  1  0  0  0  0
 11 37  1  0  0  0  0
 12 38  1  0  0  0  0
 15 39  1  0  0  0  0
 15 40  1  0  0  0  0
 16 41  1  0  0  0  0
 16 42  1  0  0  0  0
 17 43  1  0  0  0  0
 17 44  1  0  0  0  0
 17 45  1  0  0  0  0
 21 46  1  0  0  0  0
 21 47  1  0  0  0  0
 22 48  1  0  0  0  0
 23 49  1  0  0  0  0
 23 50  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003170

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]([H])(N([H])C(=O)C([H])([H])C([H])([H])C([H])([H])[H])C(=O)N([H])[C@@]([H])(C(=O)[C@@]1(OC1([H])[H])C([H])([H])O[H])C([H])([H])C(=C([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C16H26N2O6/c1-4-5-13(21)17-12(7-19)15(23)18-11(6-10(2)3)14(22)16(8-20)9-24-16/h11-12,19-20H,2,4-9H2,1,3H3,(H,17,21)(H,18,23)/t11-,12+,16-/m1/s1

> <INCHI_KEY>
JVPIPRZCKOLWKU-BGMSHATGSA-N

> <FORMULA>
C16H26N2O6

> <MOLECULAR_WEIGHT>
342.392

> <EXACT_MASS>
342.179086565

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
35.63090342533829

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-[(1S)-2-hydroxy-1-{[(2R)-1-[(2R)-2-(hydroxymethyl)oxiran-2-yl]-4-methyl-1-oxopent-4-en-2-yl]carbamoyl}ethyl]butanamide

> <ALOGPS_LOGP>
-0.51

> <JCHEM_LOGP>
-0.7099335743333335

> <ALOGPS_LOGS>
-1.62

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.680909765874617

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.082027620028306

> <JCHEM_PKA_STRONGEST_BASIC>
-1.765347043664193

> <JCHEM_POLAR_SURFACE_AREA>
128.26

> <JCHEM_REFRACTIVITY>
85.49899999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.22e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-[(1S)-2-hydroxy-1-{[(2R)-1-[(2R)-2-(hydroxymethyl)oxiran-2-yl]-4-methyl-1-oxopent-4-en-2-yl]carbamoyl}ethyl]butanamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 50 50  0  0  0  0  0  0  0  0999 V2000
   -3.6840    1.9903    1.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9671    1.3362    2.4186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3582    1.4330    3.8508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8065    0.5038    2.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5428    0.2592    0.6499 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2670   -0.4964    0.5145 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8843    0.1378    0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8345    1.3530   -0.3097 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1565   -0.5957   -0.1256 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6456   -1.1376    1.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8611   -0.0848    2.0867 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1654    0.2920   -0.6435 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7709    0.0270   -1.8915 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4217   -0.9858   -2.5409 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8066    0.9343   -2.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2683    0.4351   -3.7790 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8459   -0.9489   -3.6541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4785   -0.3354   -0.2857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9956   -0.4315   -1.4920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8201   -0.8379   -0.1563 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4400   -1.2381    1.1593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5079   -2.6817    1.1335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7908   -0.0411   -1.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5119   -1.3643   -1.2504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5443    2.5941    1.7817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3999    1.9345    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6026    0.9792    4.5173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5658    2.4554    4.1925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2952    0.8281    3.9826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9083    1.1433    2.4308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7097   -0.3789    2.7389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2370    1.3137    0.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2309   -1.4915    0.7875 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9922   -1.4629   -0.8074 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9444   -1.8968    1.5992 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6145   -1.6589    1.0010 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9821    0.3349    2.2546 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4215    1.1230   -0.0631 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6951    0.9417   -1.7618 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4473    1.9815   -2.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0457    1.1258   -4.1650 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4403    0.4314   -4.5205 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1249   -1.6730   -4.0972 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0044   -1.2190   -2.5910 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7926   -0.9966   -4.2288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4489   -0.8523    1.2847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7626   -1.0805    2.0040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2791   -2.9409    1.7087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3425    0.6274   -1.8145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6684    0.3150   -0.5407 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 20 18  1  1
 20 21  1  0
 21 22  1  0
 20 23  1  0
 23 24  1  0
 24 20  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  6 33  1  0
  9 34  1  6
 10 35  1  0
 10 36  1  0
 11 37  1  0
 12 38  1  0
 15 39  1  0
 15 40  1  0
 16 41  1  0
 16 42  1  0
 17 43  1  0
 17 44  1  0
 17 45  1  0
 21 46  1  0
 21 47  1  0
 22 48  1  0
 23 49  1  0
 23 50  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.684   1.990   1.525  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.967   1.336   2.419  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.358   1.433   3.851  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.807   0.504   2.055  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.543   0.259   0.650  0.00  0.00           C+0
HETATM    6  N   UNK     0      -0.267  -0.496   0.515  0.00  0.00           N+0
HETATM    7  C   UNK     0       0.884   0.138   0.019  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.835   1.353  -0.310  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.156  -0.596  -0.126  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.646  -1.138   1.194  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.861  -0.085   2.087  0.00  0.00           O+0
HETATM   12  N   UNK     0       3.165   0.292  -0.644  0.00  0.00           N+0
HETATM   13  C   UNK     0       3.771   0.027  -1.892  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.422  -0.986  -2.541  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.807   0.934  -2.430  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.268   0.435  -3.779  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.846  -0.949  -3.654  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.478  -0.335  -0.286  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.996  -0.432  -1.492  0.00  0.00           O+0
HETATM   20  C   UNK     0      -3.820  -0.838  -0.156  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.440  -1.238   1.159  0.00  0.00           C+0
HETATM   22  O   UNK     0      -4.508  -2.682   1.133  0.00  0.00           O+0
HETATM   23  C   UNK     0      -4.791  -0.041  -1.075  0.00  0.00           C+0
HETATM   24  O   UNK     0      -4.512  -1.364  -1.250  0.00  0.00           O+0
HETATM   25  H   UNK     0      -4.544   2.594   1.782  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.400   1.935   0.482  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.603   0.979   4.517  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.566   2.455   4.192  0.00  0.00           H+0
HETATM   29  H   UNK     0      -4.295   0.828   3.983  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.908   1.143   2.431  0.00  0.00           H+0
HETATM   31  H   UNK     0      -1.710  -0.379   2.739  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.237   1.314   0.226  0.00  0.00           H+0
HETATM   33  H   UNK     0      -0.231  -1.492   0.788  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.992  -1.463  -0.807  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.944  -1.897   1.599  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.615  -1.659   1.001  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.982   0.335   2.255  0.00  0.00           H+0
HETATM   38  H   UNK     0       3.422   1.123  -0.063  0.00  0.00           H+0
HETATM   39  H   UNK     0       5.695   0.942  -1.762  0.00  0.00           H+0
HETATM   40  H   UNK     0       4.447   1.982  -2.515  0.00  0.00           H+0
HETATM   41  H   UNK     0       6.046   1.126  -4.165  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.440   0.431  -4.521  0.00  0.00           H+0
HETATM   43  H   UNK     0       5.125  -1.673  -4.097  0.00  0.00           H+0
HETATM   44  H   UNK     0       6.004  -1.219  -2.591  0.00  0.00           H+0
HETATM   45  H   UNK     0       6.793  -0.997  -4.229  0.00  0.00           H+0
HETATM   46  H   UNK     0      -5.449  -0.852   1.285  0.00  0.00           H+0
HETATM   47  H   UNK     0      -3.763  -1.081   2.004  0.00  0.00           H+0
HETATM   48  H   UNK     0      -5.279  -2.941   1.709  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.343   0.627  -1.815  0.00  0.00           H+0
HETATM   50  H   UNK     0      -5.668   0.315  -0.541  0.00  0.00           H+0
CONECT    1    2   25   26                                                  
CONECT    2    1    3    4                                                  
CONECT    3    2   27   28   29                                             
CONECT    4    2    5   30   31                                             
CONECT    5    4    6   18   32                                             
CONECT    6    5    7   33                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   12   34                                             
CONECT   10    9   11   35   36                                             
CONECT   11   10   37                                                       
CONECT   12    9   13   38                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   39   40                                             
CONECT   16   15   17   41   42                                             
CONECT   17   16   43   44   45                                             
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   23   24                                             
CONECT   21   20   22   46   47                                             
CONECT   22   21   48                                                       
CONECT   23   20   24   49   50                                             
CONECT   24   23   20                                                       
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    3                                                            
CONECT   28    3                                                            
CONECT   29    3                                                            
CONECT   30    4                                                            
CONECT   31    4                                                            
CONECT   32    5                                                            
CONECT   33    6                                                            
CONECT   34    9                                                            
CONECT   35   10                                                            
CONECT   36   10                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   15                                                            
CONECT   40   15                                                            
CONECT   41   16                                                            
CONECT   42   16                                                            
CONECT   43   17                                                            
CONECT   44   17                                                            
CONECT   45   17                                                            
CONECT   46   21                                                            
CONECT   47   21                                                            
CONECT   48   22                                                            
CONECT   49   23                                                            
CONECT   50   23                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  100    0
END

RDKit          3D

50 50  0  0  0  0  0  0  0  0999 V2000
   -3.6840    1.9903    1.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9671    1.3362    2.4186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3582    1.4330    3.8508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8065    0.5038    2.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5428    0.2592    0.6499 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2670   -0.4964    0.5145 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8843    0.1378    0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8345    1.3530   -0.3097 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1565   -0.5957   -0.1256 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6456   -1.1376    1.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8611   -0.0848    2.0867 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1654    0.2920   -0.6435 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7709    0.0270   -1.8915 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4217   -0.9858   -2.5409 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8066    0.9343   -2.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2683    0.4351   -3.7790 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8459   -0.9489   -3.6541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4785   -0.3354   -0.2857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9956   -0.4315   -1.4920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8201   -0.8379   -0.1563 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4400   -1.2381    1.1593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5079   -2.6817    1.1335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7908   -0.0411   -1.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5119   -1.3643   -1.2504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5443    2.5941    1.7817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3999    1.9345    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6026    0.9792    4.5173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5658    2.4554    4.1925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2952    0.8281    3.9826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9083    1.1433    2.4308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7097   -0.3789    2.7389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2370    1.3137    0.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2309   -1.4915    0.7875 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9922   -1.4629   -0.8074 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9444   -1.8968    1.5992 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6145   -1.6589    1.0010 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9821    0.3349    2.2546 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4215    1.1230   -0.0631 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6951    0.9417   -1.7618 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4473    1.9815   -2.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0457    1.1258   -4.1650 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4403    0.4314   -4.5205 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1249   -1.6730   -4.0972 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0044   -1.2190   -2.5910 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7926   -0.9966   -4.2288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4489   -0.8523    1.2847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7626   -1.0805    2.0040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2791   -2.9409    1.7087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3425    0.6274   -1.8145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6684    0.3150   -0.5407 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 20 18  1  1
 20 21  1  0
 21 22  1  0
 20 23  1  0
 23 24  1  0
 24 20  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  6 33  1  0
  9 34  1  6
 10 35  1  0
 10 36  1  0
 11 37  1  0
 12 38  1  0
 15 39  1  0
 15 40  1  0
 16 41  1  0
 16 42  1  0
 17 43  1  0
 17 44  1  0
 17 45  1  0
 21 46  1  0
 21 47  1  0
 22 48  1  0
 23 49  1  0
 23 50  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
TMC 86a	MeSH

Chemical Formula

C₁₆H₂₆N₂O₆

Average Mass

342.3920 Da

Monoisotopic Mass

342.17909 Da

IUPAC Name

N-[(1S)-2-hydroxy-1-{[(2R)-1-[(2R)-2-(hydroxymethyl)oxiran-2-yl]-4-methyl-1-oxopent-4-en-2-yl]carbamoyl}ethyl]butanamide

Traditional Name

N-[(1S)-2-hydroxy-1-{[(2R)-1-[(2R)-2-(hydroxymethyl)oxiran-2-yl]-4-methyl-1-oxopent-4-en-2-yl]carbamoyl}ethyl]butanamide

CAS Registry Number

Not Available

SMILES

CCCC(=O)N[C@@H](CO)C(=O)NC(CC(C)=C)C(=O)C1(CO)CO1

InChI Identifier

InChI=1S/C16H26N2O6/c1-4-5-13(21)17-12(7-19)15(23)18-11(6-10(2)3)14(22)16(8-20)9-24-16/h11-12,19-20H,2,4-9H2,1,3H3,(H,17,21)(H,18,23)/t11?,12-,16?/m0/s1

InChI Key

JVPIPRZCKOLWKU-BGMSHATGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	10695669
Streptomyces sp. TC 1084	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.51	ALOGPS
logP	-0.71	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	12.08	ChemAxon
pKa (Strongest Basic)	-1.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	128.26 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	85.5 m³·mol⁻¹	ChemAxon
Polarizability	35.63 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA004406

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

7973887

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

66242

Good Scents ID

Not Available

References

General References

Koguchi Y, Kohno J, Suzuki S, Nishio M, Takahashi K, Ohnuki T, Komatsubara S: TMC-86A, B and TMC-96, new proteasome inhibitors from Streptomyces sp. TC 1084 and Saccharothrix sp. TC 1094. I. Taxonomy, fermentation, isolation, and biological activities. J Antibiot (Tokyo). 1999 Dec;52(12):1069-76. doi: 10.7164/antibiotics.52.1069. [PubMed:10695669 ]
Koguchi Y, Kohno J, Suzuki S, Nishio M, Takahashi K, Ohnuki T, Komatsubara S: TMC-86A, B and TMC-96, new proteasome inhibitors from Streptomyces sp. TC 1084 and Saccharothrix sp. TC 1094. II. Physico-chemical properties and structure determination. J Antibiot (Tokyo). 2000 Jan;53(1):63-5. doi: 10.7164/antibiotics.53.63. [PubMed:10724010 ]
Zabala D, Cartwright JW, Roberts DM, Law BJ, Song L, Samborskyy M, Leadlay PF, Micklefield J, Challis GL: A Flavin-Dependent Decarboxylase-Dehydrogenase-Monooxygenase Assembles the Warhead of alpha,beta-Epoxyketone Proteasome Inhibitors. J Am Chem Soc. 2016 Apr 6;138(13):4342-5. doi: 10.1021/jacs.6b01619. Epub 2016 Mar 25. [PubMed:26999044 ]

Showing NP-Card for TMC-86A (NP0003170)

MOL for NP0003170 (TMC-86A)

3D MOL for NP0003170 (TMC-86A)

3D SDF for NP0003170 (TMC-86A)

3D-SDF for NP0003170 (TMC-86A)

PDB for NP0003170 (TMC-86A)

3D PDB for NP0003170 (TMC-86A)

SMILES for NP0003170 (TMC-86A)

INCHI for NP0003170 (TMC-86A)

Structure for NP0003170 (TMC-86A)

3D Structure for NP0003170 (TMC-86A)