NP-MRD: Showing NP-Card for Memnobotrin A (NP0003136)

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Record Information

Version

2.0

Created at

2020-12-09 00:13:05 UTC

Updated at

2021-07-15 16:45:36 UTC

NP-MRD ID

NP0003136

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Memnobotrin A

Provided By

NPAtlas

Description

(1S,13R,14S,17S,19R)-7,10-dihydroxy-1,14,18,18-tetramethyl-2-oxa-6-azapentacyclo[11.8.0.0³,¹¹.0⁴,⁸.0¹⁴,¹⁹]Henicosa-3,6,8,10-tetraen-17-yl acetate belongs to the class of organic compounds known as isoflavanols. These are polycyclic compounds containing a hydroxylated isoflavan skeleton. Memnobotrin A is found in Memnoniella, Memnoniella echinata and Memnoniella echinata (JS6308). Memnobotrin A was first documented in 1999 (PMID: 10656571). Based on a literature review very few articles have been published on (1S,13R,14S,17S,19R)-7,10-dihydroxy-1,14,18,18-tetramethyl-2-oxa-6-azapentacyclo[11.8.0.0³,¹¹.0⁴,⁸.0¹⁴,¹⁹]Henicosa-3,6,8,10-tetraen-17-yl acetate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117453D          

 64 68  0  0  0  0            999 V2000
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  7  8  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242117453D          

 64 68  0  0  0  0            999 V2000
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    1.3005   -1.1545   -0.2354 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.6048   -1.0172    0.3590 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4879   -0.0726   -0.1120 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9844    1.1356   -0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8422    2.1262   -1.0324 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3283    3.3272   -1.4604 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1972    1.8553   -1.0633 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7187    0.6571   -0.6353 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8598   -0.3087   -0.1582 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6089   -1.5158    0.2537 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9833   -1.2282   -0.0075 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0561    0.0861   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5277    1.3596   -0.4792 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6754    0.1485   -0.5143 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.4602    1.3261    2.2927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6874   -0.4209    2.4078 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9311    0.3178    1.8854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3565   -0.9692   -1.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -2.1542    1.5827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3452   -2.9262   -0.0131 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8955   -2.0705    1.6988 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8736   -3.1580    0.3141 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7801   -1.5555   -2.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5296   -1.4936   -2.0210 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6226   -2.9357   -1.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4156    3.6652   -1.4949 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8751    2.6347   -1.4468 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4894   -1.5858    1.3735 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2407   -2.4390   -0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8073   -1.8439    0.1526 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3485    1.8863    0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2599    2.0964   -1.2854 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    0.1248   -1.5582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9115    0.4255    2.1178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4355   -0.3166    1.6166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1378   -1.3576    2.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7132   -1.6550   -0.3975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2654   -2.1058   -1.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4192   -2.7472    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 17 27  1  0  0  0  0
 27 28  1  0  0  0  0
 10 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 29  5  1  0  0  0  0
 28  8  1  0  0  0  0
 28 13  1  0  0  0  0
 22 16  1  0  0  0  0
 25 21  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  1 34  1  0  0  0  0
  5 35  1  6  0  0  0
  6 36  1  0  0  0  0
  6 37  1  0  0  0  0
  7 38  1  0  0  0  0
  7 39  1  0  0  0  0
  9 40  1  0  0  0  0
  9 41  1  0  0  0  0
  9 42  1  0  0  0  0
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 14 50  1  0  0  0  0
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 28 58  1  6  0  0  0
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 30 61  1  0  0  0  0
 31 62  1  0  0  0  0
 31 63  1  0  0  0  0
 31 64  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003136

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C2=C(C3=C1C([H])([H])[C@@]1([H])[C@](O3)(C([H])([H])[H])C([H])([H])C([H])([H])[C@@]3([H])C(C([H])([H])[H])(C([H])([H])[H])[C@@]([H])(OC(=O)C([H])([H])[H])C([H])([H])C([H])([H])[C@]13C([H])([H])[H])C([H])([H])N([H])C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C25H33NO5/c1-13(27)30-20-7-8-24(4)18(23(20,2)3)6-9-25(5)19(24)11-15-17(28)10-14-16(21(15)31-25)12-26-22(14)29/h10,18-20,28H,6-9,11-12H2,1-5H3,(H,26,29)/t18-,19+,20-,24-,25-/m0/s1

> <INCHI_KEY>
ICUVEGRXTWNIKO-BOWIAGTOSA-N

> <FORMULA>
C25H33NO5

> <MOLECULAR_WEIGHT>
427.541

> <EXACT_MASS>
427.235873167

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
47.728696814421326

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,13R,14S,17S,19R)-10-hydroxy-1,14,18,18-tetramethyl-7-oxo-2-oxa-6-azapentacyclo[11.8.0.0^{3,11}.0^{4,8}.0^{14,19}]henicosa-3(11),4(8),9-trien-17-yl acetate

> <ALOGPS_LOGP>
4.40

> <JCHEM_LOGP>
3.4843770376666656

> <ALOGPS_LOGS>
-4.83

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.866239936194475

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.07404159990972

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3312904587303218

> <JCHEM_POLAR_SURFACE_AREA>
84.86000000000001

> <JCHEM_REFRACTIVITY>
116.45659999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.38e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,13R,14S,17S,19R)-10-hydroxy-1,14,18,18-tetramethyl-7-oxo-2-oxa-6-azapentacyclo[11.8.0.0^{3,11}.0^{4,8}.0^{14,19}]henicosa-3(11),4(8),9-trien-17-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 64 68  0  0  0  0  0  0  0  0999 V2000
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    0.5631   -2.1168    0.6346 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3005   -1.1545   -0.2354 C   0  0  2  0  0  0  0  0  0  0  0  0
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    1.3485    1.8863    0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2599    2.0964   -1.2854 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1378   -1.3576    2.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7132   -1.6550   -0.3975 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4192   -2.7472    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  1
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  6
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 15 16  1  0
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 17 18  1  0
 18 19  1  0
 18 20  2  0
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 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  2  0
 17 27  1  0
 27 28  1  0
 10 29  1  0
 29 30  1  1
 29 31  1  0
 29  5  1  0
 28  8  1  0
 28 13  1  0
 22 16  1  0
 25 21  1  0
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  1 34  1  0
  5 35  1  6
  6 36  1  0
  6 37  1  0
  7 38  1  0
  7 39  1  0
  9 40  1  0
  9 41  1  0
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 28 58  1  6
 30 59  1  0
 30 60  1  0
 30 61  1  0
 31 62  1  0
 31 63  1  0
 31 64  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -6.914   1.699   0.184  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.789   1.087  -0.568  0.00  0.00           C+0
HETATM    3  O   UNK     0      -5.998   0.592  -1.693  0.00  0.00           O+0
HETATM    4  O   UNK     0      -4.538   1.078  -0.009  0.00  0.00           O+0
HETATM    5  C   UNK     0      -3.406   0.513  -0.660  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.361   1.546  -0.964  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.270   1.645   0.039  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.597   0.330   0.344  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.194   0.351   1.785  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.465  -0.815  -0.055  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.913  -2.066   0.577  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.563  -2.117   0.635  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.301  -1.155  -0.235  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.572  -1.849  -1.582  0.00  0.00           C+0
HETATM   15  O   UNK     0       2.605  -1.017   0.359  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.488  -0.073  -0.112  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.984   1.136  -0.546  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.842   2.126  -1.032  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.328   3.327  -1.460  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.197   1.855  -1.063  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.719   0.657  -0.635  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.860  -0.309  -0.158  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.609  -1.516   0.254  0.00  0.00           C+0
HETATM   24  N   UNK     0       6.983  -1.228  -0.008  0.00  0.00           N+0
HETATM   25  C   UNK     0       7.056   0.086  -0.544  0.00  0.00           C+0
HETATM   26  O   UNK     0       8.137   0.669  -0.889  0.00  0.00           O+0
HETATM   27  C   UNK     0       1.528   1.360  -0.479  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.675   0.149  -0.514  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.921  -0.619   0.184  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.313  -0.453   1.616  0.00  0.00           C+0
HETATM   31  C   UNK     0      -3.626  -1.890  -0.314  0.00  0.00           C+0
HETATM   32  H   UNK     0      -6.820   1.511   1.273  0.00  0.00           H+0
HETATM   33  H   UNK     0      -6.906   2.820   0.068  0.00  0.00           H+0
HETATM   34  H   UNK     0      -7.865   1.285  -0.203  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.765   0.123  -1.635  0.00  0.00           H+0
HETATM   36  H   UNK     0      -2.874   2.529  -1.012  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.901   1.393  -1.975  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.517   2.364  -0.340  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.685   2.134   0.968  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.460   1.326   2.293  0.00  0.00           H+0
HETATM   41  H   UNK     0      -0.687  -0.421   2.408  0.00  0.00           H+0
HETATM   42  H   UNK     0       0.931   0.318   1.885  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.357  -0.969  -1.172  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.373  -2.154   1.583  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.345  -2.926  -0.013  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.896  -2.071   1.699  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.874  -3.158   0.314  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.780  -1.556  -2.301  0.00  0.00           H+0
HETATM   49  H   UNK     0       2.530  -1.494  -2.021  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.623  -2.936  -1.477  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.416   3.665  -1.495  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.875   2.635  -1.447  0.00  0.00           H+0
HETATM   53  H   UNK     0       5.489  -1.586   1.373  0.00  0.00           H+0
HETATM   54  H   UNK     0       5.241  -2.439  -0.228  0.00  0.00           H+0
HETATM   55  H   UNK     0       7.807  -1.844   0.153  0.00  0.00           H+0
HETATM   56  H   UNK     0       1.349   1.886   0.505  0.00  0.00           H+0
HETATM   57  H   UNK     0       1.260   2.096  -1.285  0.00  0.00           H+0
HETATM   58  H   UNK     0       0.226   0.125  -1.558  0.00  0.00           H+0
HETATM   59  H   UNK     0      -2.912   0.426   2.118  0.00  0.00           H+0
HETATM   60  H   UNK     0      -4.436  -0.317   1.617  0.00  0.00           H+0
HETATM   61  H   UNK     0      -3.138  -1.358   2.215  0.00  0.00           H+0
HETATM   62  H   UNK     0      -4.713  -1.655  -0.398  0.00  0.00           H+0
HETATM   63  H   UNK     0      -3.265  -2.106  -1.341  0.00  0.00           H+0
HETATM   64  H   UNK     0      -3.419  -2.747   0.333  0.00  0.00           H+0
CONECT    1    2   32   33   34                                             
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29   35                                             
CONECT    6    5    7   36   37                                             
CONECT    7    6    8   38   39                                             
CONECT    8    7    9   10   28                                             
CONECT    9    8   40   41   42                                             
CONECT   10    8   11   29   43                                             
CONECT   11   10   12   44   45                                             
CONECT   12   11   13   46   47                                             
CONECT   13   12   14   15   28                                             
CONECT   14   13   48   49   50                                             
CONECT   15   13   16                                                       
CONECT   16   15   17   22                                                  
CONECT   17   16   18   27                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   51                                                       
CONECT   20   18   21   52                                                  
CONECT   21   20   22   25                                                  
CONECT   22   21   23   16                                                  
CONECT   23   22   24   53   54                                             
CONECT   24   23   25   55                                                  
CONECT   25   24   26   21                                                  
CONECT   26   25                                                            
CONECT   27   17   28   56   57                                             
CONECT   28   27    8   13   58                                             
CONECT   29   10   30   31    5                                             
CONECT   30   29   59   60   61                                             
CONECT   31   29   62   63   64                                             
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    1                                                            
CONECT   35    5                                                            
CONECT   36    6                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    7                                                            
CONECT   40    9                                                            
CONECT   41    9                                                            
CONECT   42    9                                                            
CONECT   43   10                                                            
CONECT   44   11                                                            
CONECT   45   11                                                            
CONECT   46   12                                                            
CONECT   47   12                                                            
CONECT   48   14                                                            
CONECT   49   14                                                            
CONECT   50   14                                                            
CONECT   51   19                                                            
CONECT   52   20                                                            
CONECT   53   23                                                            
CONECT   54   23                                                            
CONECT   55   24                                                            
CONECT   56   27                                                            
CONECT   57   27                                                            
CONECT   58   28                                                            
CONECT   59   30                                                            
CONECT   60   30                                                            
CONECT   61   30                                                            
CONECT   62   31                                                            
CONECT   63   31                                                            
CONECT   64   31                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  136    0
END

RDKit          3D

64 68  0  0  0  0  0  0  0  0999 V2000
   -6.9135    1.6989    0.1835 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7887    1.0867   -0.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9982    0.5919   -1.6928 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5380    1.0781   -0.0085 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4055    0.5127   -0.6597 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3609    1.5458   -0.9639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2704    1.6445    0.0393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5967    0.3303    0.3444 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1942    0.3507    1.7849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4653   -0.8148   -0.0553 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9133   -2.0658    0.5766 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5631   -2.1168    0.6346 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3005   -1.1545   -0.2354 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5719   -1.8485   -1.5817 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -1.0172    0.3590 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4879   -0.0726   -0.1120 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9844    1.1356   -0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8422    2.1262   -1.0324 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3283    3.3272   -1.4604 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1972    1.8553   -1.0633 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7187    0.6571   -0.6353 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8598   -0.3087   -0.1582 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6089   -1.5158    0.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9833   -1.2282   -0.0075 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0561    0.0861   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1368    0.6688   -0.8894 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5277    1.3596   -0.4792 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6754    0.1485   -0.5143 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9208   -0.6194    0.1836 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3128   -0.4527    1.6162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6264   -1.8901   -0.3140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8196    1.5114    1.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9058    2.8198    0.0684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8651    1.2848   -0.2030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7647    0.1231   -1.6350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8739    2.5290   -1.0119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9010    1.3927   -1.9748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5168    2.3640   -0.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6849    2.1339    0.9681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4602    1.3261    2.2927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6874   -0.4209    2.4078 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9311    0.3178    1.8854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3565   -0.9692   -1.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -2.1542    1.5827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3452   -2.9262   -0.0131 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8955   -2.0705    1.6988 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8736   -3.1580    0.3141 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7801   -1.5555   -2.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5296   -1.4936   -2.0210 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6226   -2.9357   -1.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4156    3.6652   -1.4949 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8751    2.6347   -1.4468 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4894   -1.5858    1.3735 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2407   -2.4390   -0.2280 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8073   -1.8439    0.1526 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3485    1.8863    0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2599    2.0964   -1.2854 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    0.1248   -1.5582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9115    0.4255    2.1178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4355   -0.3166    1.6166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1378   -1.3576    2.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7132   -1.6550   -0.3975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2654   -2.1058   -1.3412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4192   -2.7472    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  1
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  6
 13 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 18 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  2  0
 17 27  1  0
 27 28  1  0
 10 29  1  0
 29 30  1  1
 29 31  1  0
 29  5  1  0
 28  8  1  0
 28 13  1  0
 22 16  1  0
 25 21  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  5 35  1  6
  6 36  1  0
  6 37  1  0
  7 38  1  0
  7 39  1  0
  9 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  6
 11 44  1  0
 11 45  1  0
 12 46  1  0
 12 47  1  0
 14 48  1  0
 14 49  1  0
 14 50  1  0
 19 51  1  0
 20 52  1  0
 23 53  1  0
 23 54  1  0
 24 55  1  0
 27 56  1  0
 27 57  1  0
 28 58  1  6
 30 59  1  0
 30 60  1  0
 30 61  1  0
 31 62  1  0
 31 63  1  0
 31 64  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(1S,13R,14S,17S,19R)-7,10-Dihydroxy-1,14,18,18-tetramethyl-2-oxa-6-azapentacyclo[11.8.0.0,.0,.0,]henicosa-3,6,8,10-tetraen-17-yl acetic acid	Generator

Chemical Formula

C₂₅H₃₃NO₅

Average Mass

427.5410 Da

Monoisotopic Mass

427.23587 Da

IUPAC Name

(1S,13R,14S,17S,19R)-10-hydroxy-1,14,18,18-tetramethyl-7-oxo-2-oxa-6-azapentacyclo[11.8.0.0^{3,11}.0^{4,8}.0^{14,19}]henicosa-3(11),4(8),9-trien-17-yl acetate

Traditional Name

(1S,13R,14S,17S,19R)-10-hydroxy-1,14,18,18-tetramethyl-7-oxo-2-oxa-6-azapentacyclo[11.8.0.0^{3,11}.0^{4,8}.0^{14,19}]henicosa-3(11),4(8),9-trien-17-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1CC[C@@]2(C)[C@@H](CC[C@]3(C)OC4=C5CNC(=O)C5=CC(O)=C4C[C@H]23)C1(C)C

InChI Identifier

InChI=1S/C25H33NO5/c1-13(27)30-20-7-8-24(4)18(23(20,2)3)6-9-25(5)19(24)11-15-17(28)10-14-16(21(15)31-25)12-26-22(14)29/h10,18-20,28H,6-9,11-12H2,1-5H3,(H,26,29)/t18-,19+,20-,24-,25-/m0/s1

InChI Key

ICUVEGRXTWNIKO-BOWIAGTOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Memnoniella	NPAtlas	10656571
Memnoniella echinata	LOTUS Database	35616633
Memnoniella echinata (JS6308)	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoflavanols. These are polycyclic compounds containing a hydroxylated isoflavan skeleton.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Isoflavans

Direct Parent

Isoflavanols

Alternative Parents

Substituents

Isoflavanol
Dibenzopyran
Naphthopyran
Xanthene
Benzopyran
1-benzopyran
Chromane
Isoindolone
Naphthalene
Isoindoline
Isoindole or derivatives
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Pyran
Carboxamide group
Carboxylic acid ester
Secondary carboxylic acid amide
Lactam
Organoheterocyclic compound
Azacycle
Ether
Oxacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organopnictogen compound
Organic nitrogen compound
Organic oxygen compound
Organic oxide
Carbonyl group
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.4	ALOGPS
logP	3.48	ChemAxon
logS	-4.8	ALOGPS
pKa (Strongest Acidic)	9.07	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	84.86 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	116.46 m³·mol⁻¹	ChemAxon
Polarizability	47.73 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA012675

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8749883

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10574496

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hinkley SF, Fettinger JC, Dudley K, Jarvis BB: Memnobotrins and memnoconols: novel metabolites from Memnoniella echinata. J Antibiot (Tokyo). 1999 Nov;52(11):988-97. doi: 10.7164/antibiotics.52.988. [PubMed:10656571 ]

Showing NP-Card for Memnobotrin A (NP0003136)

MOL for NP0003136 (Memnobotrin A)

3D MOL for NP0003136 (Memnobotrin A)

3D SDF for NP0003136 (Memnobotrin A)

3D-SDF for NP0003136 (Memnobotrin A)

PDB for NP0003136 (Memnobotrin A)

3D PDB for NP0003136 (Memnobotrin A)

SMILES for NP0003136 (Memnobotrin A)

INCHI for NP0003136 (Memnobotrin A)

Structure for NP0003136 (Memnobotrin A)

3D Structure for NP0003136 (Memnobotrin A)