NP-MRD: Showing NP-Card for Nogalamycinone (NP0003122)

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Record Information

Version

2.0

Created at

2020-12-09 00:12:29 UTC

Updated at

2021-07-15 16:45:34 UTC

NP-MRD ID

NP0003122

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Nogalamycinone

Provided By

NPAtlas

Description

Methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate is also known as nogalamycinone. Methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Nogalamycinone is found in Streptomyces nogalater. Nogalamycinone was first documented in 2000 (PMID: 10639368). Based on a literature review very few articles have been published on methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117453D          

 47 50  0  0  0  0            999 V2000
   -4.3518    3.2214   -0.6574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0034    2.0637    0.1074 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7531    1.4862   -0.0212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9432    2.0037   -0.8208 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3508    0.2930    0.7466 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9478   -0.1181    0.4986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0160    0.9144    0.5495 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3158    0.6684    0.3000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7464   -0.5948   -0.0026 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1668   -0.8974   -0.2767 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5167   -2.0717   -0.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 47 50  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242117453D          

 47 50  0  0  0  0            999 V2000
   -4.3518    3.2214   -0.6574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0034    2.0637    0.1074 O   0  0  0  0  0  0  0  0  0  0  0  0
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 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 16  5  1  0  0  0  0
 27 21  1  0  0  0  0
 12  6  1  0  0  0  0
 28  8  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  5 33  1  1  0  0  0
  7 34  1  0  0  0  0
 11 35  1  0  0  0  0
 13 36  1  6  0  0  0
 14 37  1  0  0  0  0
 15 38  1  0  0  0  0
 15 39  1  0  0  0  0
 17 40  1  0  0  0  0
 17 41  1  0  0  0  0
 17 42  1  0  0  0  0
 18 43  1  0  0  0  0
 23 44  1  0  0  0  0
 24 45  1  0  0  0  0
 25 46  1  0  0  0  0
 26 47  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003122

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)C3=C(C([H])=C4C(=C3O[H])[C@@]([H])(O[H])C([H])([H])[C@@](O[H])(C([H])([H])[H])[C@]4([H])C(=O)OC([H])([H])[H])C(=O)C2=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C21H18O8/c1-21(28)7-12(23)14-9(16(21)20(27)29-2)6-10-15(19(14)26)18(25)13-8(17(10)24)4-3-5-11(13)22/h3-6,12,16,22-23,26,28H,7H2,1-2H3/t12-,16-,21-/m0/s1

> <INCHI_KEY>
WCKNDRCJQZCZLO-SAZGQGMLSA-N

> <FORMULA>
C21H18O8

> <MOLECULAR_WEIGHT>
398.367

> <EXACT_MASS>
398.10016754

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
47

> <JCHEM_AVERAGE_POLARIZABILITY>
39.96925422566513

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate

> <ALOGPS_LOGP>
2.70

> <JCHEM_LOGP>
2.1786287349999998

> <ALOGPS_LOGS>
-2.78

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.682776934385755

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.9979176201390185

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1181045479362854

> <JCHEM_POLAR_SURFACE_AREA>
141.36

> <JCHEM_REFRACTIVITY>
101.22959999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.57e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-3,4-dihydro-1H-tetracene-1-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 47 50  0  0  0  0  0  0  0  0999 V2000
   -4.3518    3.2214   -0.6574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0034    2.0637    0.1074 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7531    1.4862   -0.0212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9432    2.0037   -0.8208 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3508    0.2930    0.7466 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9478   -0.1181    0.4986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0160    0.9144    0.5495 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3158    0.6684    0.3000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7464   -0.5948   -0.0026 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8444   -1.6548   -0.0628 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3224   -2.9092   -0.3758 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5104   -1.3770    0.1987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4319   -2.5204    0.1782 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9182   -3.5827    0.9627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7574   -2.1591    0.7811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3009   -0.8394    0.3856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5758   -0.5961    1.1664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5974   -0.7979   -0.9830 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1668   -0.8974   -0.2767 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5167   -2.0717   -0.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1618    0.1463   -0.2334 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5085   -0.0694   -0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0186   -1.2909   -0.7870 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4243    1.0030   -0.4191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9452    2.2421   -0.1135 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6269    2.4756    0.1321 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7362    1.4387    0.0740 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3320    1.7114    0.3400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9587    2.8791    0.6160 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4073    3.2141   -0.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1170    4.1111   -0.0435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6775    3.2697   -1.5486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4789    0.5015    1.8230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3252    1.9177    0.7928 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7212   -3.6897   -0.4619 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5665   -2.8554   -0.8761 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3969   -4.4060    0.6495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5228   -2.9261    0.4918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6188   -2.1647    1.8868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3677   -0.1356    0.5509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9764   -1.5595    1.5968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3769    0.0447    2.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0065   -1.6594   -1.2490 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5765   -2.1394   -0.8783 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4748    0.8544   -0.6077 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6417    3.0799   -0.0630 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2574    3.4745    0.3758 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 16 18  1  6
  9 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 16  5  1  0
 27 21  1  0
 12  6  1  0
 28  8  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  5 33  1  1
  7 34  1  0
 11 35  1  0
 13 36  1  6
 14 37  1  0
 15 38  1  0
 15 39  1  0
 17 40  1  0
 17 41  1  0
 17 42  1  0
 18 43  1  0
 23 44  1  0
 24 45  1  0
 25 46  1  0
 26 47  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.352   3.221  -0.657  0.00  0.00           C+0
HETATM    2  O   UNK     0      -4.003   2.064   0.107  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.753   1.486  -0.021  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.943   2.004  -0.821  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.351   0.293   0.747  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.948  -0.118   0.499  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.016   0.914   0.550  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.316   0.668   0.300  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.746  -0.595  -0.003  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.844  -1.655  -0.063  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.322  -2.909  -0.376  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.510  -1.377   0.199  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.432  -2.520   0.178  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.918  -3.583   0.963  0.00  0.00           O+0
HETATM   15  C   UNK     0      -2.757  -2.159   0.781  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.301  -0.839   0.386  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.576  -0.596   1.166  0.00  0.00           C+0
HETATM   18  O   UNK     0      -3.597  -0.798  -0.983  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.167  -0.897  -0.277  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.517  -2.072  -0.550  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.162   0.146  -0.233  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.508  -0.069  -0.480  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.019  -1.291  -0.787  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.424   1.003  -0.419  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.945   2.242  -0.114  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.627   2.476   0.132  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.736   1.439   0.074  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.332   1.711   0.340  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.959   2.879   0.616  0.00  0.00           O+0
HETATM   30  H   UNK     0      -5.407   3.214  -0.927  0.00  0.00           H+0
HETATM   31  H   UNK     0      -4.117   4.111  -0.044  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.678   3.270  -1.549  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.479   0.501   1.823  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.325   1.918   0.793  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.721  -3.690  -0.462  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.567  -2.855  -0.876  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.397  -4.406   0.650  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.523  -2.926   0.492  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.619  -2.165   1.887  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.368  -0.136   0.551  0.00  0.00           H+0
HETATM   41  H   UNK     0      -4.976  -1.560   1.597  0.00  0.00           H+0
HETATM   42  H   UNK     0      -4.377   0.045   2.058  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.006  -1.659  -1.249  0.00  0.00           H+0
HETATM   44  H   UNK     0       5.577  -2.139  -0.878  0.00  0.00           H+0
HETATM   45  H   UNK     0       7.475   0.854  -0.608  0.00  0.00           H+0
HETATM   46  H   UNK     0       6.642   3.080  -0.063  0.00  0.00           H+0
HETATM   47  H   UNK     0       4.257   3.474   0.376  0.00  0.00           H+0
CONECT    1    2   30   31   32                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   16   33                                             
CONECT    6    5    7   12                                                  
CONECT    7    6    8   34                                                  
CONECT    8    7    9   28                                                  
CONECT    9    8   10   19                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10   35                                                       
CONECT   12   10   13    6                                                  
CONECT   13   12   14   15   36                                             
CONECT   14   13   37                                                       
CONECT   15   13   16   38   39                                             
CONECT   16   15   17   18    5                                             
CONECT   17   16   40   41   42                                             
CONECT   18   16   43                                                       
CONECT   19    9   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   27                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22   44                                                       
CONECT   24   22   25   45                                                  
CONECT   25   24   26   46                                                  
CONECT   26   25   27   47                                                  
CONECT   27   26   28   21                                                  
CONECT   28   27   29    8                                                  
CONECT   29   28                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    5                                                            
CONECT   34    7                                                            
CONECT   35   11                                                            
CONECT   36   13                                                            
CONECT   37   14                                                            
CONECT   38   15                                                            
CONECT   39   15                                                            
CONECT   40   17                                                            
CONECT   41   17                                                            
CONECT   42   17                                                            
CONECT   43   18                                                            
CONECT   44   23                                                            
CONECT   45   24                                                            
CONECT   46   25                                                            
CONECT   47   26                                                            
MASTER        0    0    0    0    0    0    0    0   47    0  100    0
END

RDKit          3D

47 50  0  0  0  0  0  0  0  0999 V2000
   -4.3518    3.2214   -0.6574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0034    2.0637    0.1074 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7531    1.4862   -0.0212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9432    2.0037   -0.8208 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3508    0.2930    0.7466 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9478   -0.1181    0.4986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0160    0.9144    0.5495 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3158    0.6684    0.3000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7464   -0.5948   -0.0026 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8444   -1.6548   -0.0628 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3224   -2.9092   -0.3758 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5104   -1.3770    0.1987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4319   -2.5204    0.1782 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9182   -3.5827    0.9627 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7574   -2.1591    0.7811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3009   -0.8394    0.3856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5758   -0.5961    1.1664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5974   -0.7979   -0.9830 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1668   -0.8974   -0.2767 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5167   -2.0717   -0.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1618    0.1463   -0.2334 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5085   -0.0694   -0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0186   -1.2909   -0.7870 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4243    1.0030   -0.4191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9452    2.2421   -0.1135 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6269    2.4756    0.1321 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7362    1.4387    0.0740 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3320    1.7114    0.3400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9587    2.8791    0.6160 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4073    3.2141   -0.9274 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1170    4.1111   -0.0435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6775    3.2697   -1.5486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4789    0.5015    1.8230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3252    1.9177    0.7928 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7212   -3.6897   -0.4619 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5665   -2.8554   -0.8761 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3969   -4.4060    0.6495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5228   -2.9261    0.4918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6188   -2.1647    1.8868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3677   -0.1356    0.5509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9764   -1.5595    1.5968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3769    0.0447    2.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0065   -1.6594   -1.2490 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5765   -2.1394   -0.8783 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4748    0.8544   -0.6077 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6417    3.0799   -0.0630 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2574    3.4745    0.3758 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 16 18  1  6
  9 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 16  5  1  0
 27 21  1  0
 12  6  1  0
 28  8  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  5 33  1  1
  7 34  1  0
 11 35  1  0
 13 36  1  6
 14 37  1  0
 15 38  1  0
 15 39  1  0
 17 40  1  0
 17 41  1  0
 17 42  1  0
 18 43  1  0
 23 44  1  0
 24 45  1  0
 25 46  1  0
 26 47  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Nogalamycinone	Kegg
Methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylic acid	Generator

Chemical Formula

C₂₁H₁₈O₈

Average Mass

398.3670 Da

Monoisotopic Mass

398.10017 Da

IUPAC Name

methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate

Traditional Name

methyl (1R,2S,4S)-2,4,5,7-tetrahydroxy-2-methyl-6,11-dioxo-3,4-dihydro-1H-tetracene-1-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@@H]1C2=C([C@@H](O)C[C@]1(C)O)C(O)=C1C(=O)C3=C(C=CC=C3O)C(=O)C1=C2

InChI Identifier

InChI=1S/C21H18O8/c1-21(28)7-12(23)14-9(16(21)20(27)29-2)6-10-15(19(14)26)18(25)13-8(17(10)24)4-3-5-11(13)22/h3-6,12,16,22-23,26,28H,7H2,1-2H3/t12-,16-,21-/m0/s1

InChI Key

WCKNDRCJQZCZLO-SAZGQGMLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces nogalater	NPAtlas	10639368

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.7	ALOGPS
logP	2.18	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	8	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	141.36 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	101.23 m³·mol⁻¹	ChemAxon
Polarizability	39.97 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA001497

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

30791359

KEGG Compound ID

C18631

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53297390

PDB ID

Not Available

ChEBI ID

81875

Good Scents ID

Not Available

References

General References

Torkkell S, Kunnari T, Palmu K, Hakala J, Mantsala P, Ylihonko K: Identification of a cyclase gene dictating the C-9 stereochemistry of anthracyclines from Streptomyces nogalater. Antimicrob Agents Chemother. 2000 Feb;44(2):396-9. doi: 10.1128/aac.44.2.396-399.2000. [PubMed:10639368 ]

Showing NP-Card for Nogalamycinone (NP0003122)

MOL for NP0003122 (Nogalamycinone)

3D MOL for NP0003122 (Nogalamycinone)

3D SDF for NP0003122 (Nogalamycinone)

3D-SDF for NP0003122 (Nogalamycinone)

PDB for NP0003122 (Nogalamycinone)

3D PDB for NP0003122 (Nogalamycinone)

SMILES for NP0003122 (Nogalamycinone)

INCHI for NP0003122 (Nogalamycinone)

Structure for NP0003122 (Nogalamycinone)

3D Structure for NP0003122 (Nogalamycinone)