NP-MRD: Showing NP-Card for Gibbestatin B (NP0003113)

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Record Information

Version

2.0

Created at

2020-12-09 00:12:06 UTC

Updated at

2021-07-15 16:45:33 UTC

NP-MRD ID

NP0003113

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gibbestatin B

Provided By

NPAtlas

Description

Gibbestatin B is found in Streptomyces sp. C39. Gibbestatin B was first documented in 1999 (PMID: 10604763). Based on a literature review very few articles have been published on 2-hydroxy-6-[(3E,5S,7E)-5-[(1S)-1-methoxyethyl]-7-methyl-8-(3-methyloxiran-2-yl)-6-oxoocta-1,3,7-trien-1-yl]benzoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117453D          

 54 55  0  0  0  0            999 V2000
    0.4325   -3.6167   -0.2651 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9998   -2.4317   -0.7299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6460   -1.7048    0.2813 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1705   -1.9633    0.1067 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3912   -0.2788    0.1391 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0409    0.2551    0.1797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1113   -0.3294    0.1305 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.3187   -2.1254   -0.0252 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1280   -2.4989   -0.0515 O   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  5  6  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242117453D          

 54 55  0  0  0  0            999 V2000
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   -6.0089    3.6753    0.4449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1762    2.4668    0.3437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3210    0.4280    0.1772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9655   -3.0733   -0.8497 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7769    0.7874   -2.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1030    2.4253   -2.3420 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0597    1.2940   -3.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9229    0.7110    0.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8824    1.9371   -1.2611 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6089    1.6559    0.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4268    0.9334    2.5793 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2118   -0.4258    1.7527 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2018    0.7424    2.6956 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
  5 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 16 10  1  0  0  0  0
 27 25  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
  3 32  1  1  0  0  0
  4 33  1  0  0  0  0
  4 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  1  0  0  0
  6 37  1  0  0  0  0
  7 38  1  0  0  0  0
  8 39  1  0  0  0  0
  9 40  1  0  0  0  0
 11 41  1  0  0  0  0
 12 42  1  0  0  0  0
 13 43  1  0  0  0  0
 15 44  1  0  0  0  0
 19 45  1  0  0  0  0
 23 46  1  0  0  0  0
 23 47  1  0  0  0  0
 23 48  1  0  0  0  0
 24 49  1  0  0  0  0
 25 50  1  6  0  0  0
 27 51  1  6  0  0  0
 28 52  1  0  0  0  0
 28 53  1  0  0  0  0
 28 54  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003113

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C(O[H])C([H])=C([H])C([H])=C1\C([H])=C(/[H])\C(\[H])=C(/[H])[C@]([H])(C(=O)C(=C(/[H])[C@@]1([H])O[C@@]1([H])C([H])([H])[H])\C([H])([H])[H])[C@@]([H])(OC([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C22H26O6/c1-13(12-19-15(3)28-19)21(24)17(14(2)27-4)10-6-5-8-16-9-7-11-18(23)20(16)22(25)26/h5-12,14-15,17,19,23H,1-4H3,(H,25,26)/b8-5+,10-6+,13-12+/t14-,15-,17-,19+/m0/s1

> <INCHI_KEY>
WNSZZRDXVFFVPW-IDOQMONCSA-N

> <FORMULA>
C22H26O6

> <MOLECULAR_WEIGHT>
386.444

> <EXACT_MASS>
386.172938557

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
42.66200270876993

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-hydroxy-6-[(1E,3E,5S,7E)-5-[(1S)-1-methoxyethyl]-7-methyl-8-[(2R,3S)-3-methyloxiran-2-yl]-6-oxoocta-1,3,7-trien-1-yl]benzoic acid

> <ALOGPS_LOGP>
3.47

> <JCHEM_LOGP>
4.609336200333334

> <ALOGPS_LOGS>
-4.29

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.19366637607412

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.5093514617027837

> <JCHEM_PKA_STRONGEST_BASIC>
-3.8724874292535936

> <JCHEM_POLAR_SURFACE_AREA>
96.36000000000001

> <JCHEM_REFRACTIVITY>
109.6344

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.97e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-hydroxy-6-[(1E,3E,5S,7E)-5-[(1S)-1-methoxyethyl]-7-methyl-8-[(2R,3S)-3-methyloxiran-2-yl]-6-oxoocta-1,3,7-trien-1-yl]benzoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 54 55  0  0  0  0  0  0  0  0999 V2000
    0.4325   -3.6167   -0.2651 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9998   -2.4317   -0.7299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6460   -1.7048    0.2813 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1705   -1.9633    0.1067 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3912   -0.2788    0.1391 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0409    0.2551    0.1797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1113   -0.3294    0.1305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3887    0.4180    0.1886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5556   -0.2077    0.1360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8381    0.5016    0.1910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8956    1.8762    0.3018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0709    2.5992    0.3580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2513    1.9192    0.3011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2510    0.5640    0.1918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4654   -0.0971    0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0400   -0.1678    0.1349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1505   -1.5907    0.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3187   -2.1254   -0.0252 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1280   -2.4989   -0.0515 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0682    0.3120   -1.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3538    0.2948   -2.1181 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3768    0.8704   -1.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8670    1.3449   -2.4728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2017    1.0072   -0.1320 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5670    1.5975   -0.2748 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7317    2.6541    0.7525 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5521    1.4158    0.7614 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3332    0.6566    2.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0513   -4.0947   -1.1395 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2233   -4.3413    0.0513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2968   -3.5134    0.5285 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4714   -2.1709    1.2912 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5478   -1.6171   -0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7484   -1.6051    0.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3159   -3.0978    0.1433 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9606    0.2714    1.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0081    1.3627    0.2667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1626   -1.3728    0.0452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3155    1.4680    0.2734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4585   -1.2802    0.0497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9646    2.4200    0.3472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0089    3.6753    0.4449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1762    2.4668    0.3437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3210    0.4280    0.1772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9655   -3.0733   -0.8497 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7769    0.7874   -2.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1030    2.4253   -2.3420 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0597    1.2940   -3.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9229    0.7110    0.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8824    1.9371   -1.2611 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6089    1.6559    0.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4268    0.9334    2.5793 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2118   -0.4258    1.7527 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2018    0.7424    2.6956 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
  5 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 22 24  2  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 16 10  1  0
 27 25  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  3 32  1  1
  4 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  1
  6 37  1  0
  7 38  1  0
  8 39  1  0
  9 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 15 44  1  0
 19 45  1  0
 23 46  1  0
 23 47  1  0
 23 48  1  0
 24 49  1  0
 25 50  1  6
 27 51  1  6
 28 52  1  0
 28 53  1  0
 28 54  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       0.433  -3.617  -0.265  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.000  -2.432  -0.730  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.646  -1.705   0.281  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.171  -1.963   0.107  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.391  -0.279   0.139  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.041   0.255   0.180  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.111  -0.329   0.131  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.389   0.418   0.189  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.556  -0.208   0.136  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.838   0.502   0.191  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.896   1.876   0.302  0.00  0.00           C+0
HETATM   12  C   UNK     0      -6.071   2.599   0.358  0.00  0.00           C+0
HETATM   13  C   UNK     0      -7.251   1.919   0.301  0.00  0.00           C+0
HETATM   14  C   UNK     0      -7.251   0.564   0.192  0.00  0.00           C+0
HETATM   15  O   UNK     0      -8.465  -0.097   0.136  0.00  0.00           O+0
HETATM   16  C   UNK     0      -6.040  -0.168   0.135  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.151  -1.591   0.020  0.00  0.00           C+0
HETATM   18  O   UNK     0      -7.319  -2.125  -0.025  0.00  0.00           O+0
HETATM   19  O   UNK     0      -5.128  -2.499  -0.052  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.068   0.312  -1.043  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.354   0.295  -2.118  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.377   0.870  -1.132  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.867   1.345  -2.473  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.202   1.007  -0.132  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.567   1.597  -0.275  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.732   2.654   0.753  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.552   1.416   0.761  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.333   0.657   2.023  0.00  0.00           C+0
HETATM   29  H   UNK     0      -0.051  -4.095  -1.139  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.223  -4.341   0.051  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.297  -3.513   0.529  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.471  -2.171   1.291  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.548  -1.617  -0.842  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.748  -1.605   0.962  0.00  0.00           H+0
HETATM   35  H   UNK     0       3.316  -3.098   0.143  0.00  0.00           H+0
HETATM   36  H   UNK     0       1.961   0.271   1.015  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.008   1.363   0.267  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.163  -1.373   0.045  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.316   1.468   0.273  0.00  0.00           H+0
HETATM   40  H   UNK     0      -3.458  -1.280   0.050  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.965   2.420   0.347  0.00  0.00           H+0
HETATM   42  H   UNK     0      -6.009   3.675   0.445  0.00  0.00           H+0
HETATM   43  H   UNK     0      -8.176   2.467   0.344  0.00  0.00           H+0
HETATM   44  H   UNK     0      -9.321   0.428   0.177  0.00  0.00           H+0
HETATM   45  H   UNK     0      -4.965  -3.073  -0.850  0.00  0.00           H+0
HETATM   46  H   UNK     0       4.777   0.787  -2.776  0.00  0.00           H+0
HETATM   47  H   UNK     0       4.103   2.425  -2.342  0.00  0.00           H+0
HETATM   48  H   UNK     0       3.060   1.294  -3.234  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.923   0.711   0.853  0.00  0.00           H+0
HETATM   50  H   UNK     0       5.882   1.937  -1.261  0.00  0.00           H+0
HETATM   51  H   UNK     0       7.609   1.656   0.535  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.427   0.933   2.579  0.00  0.00           H+0
HETATM   53  H   UNK     0       6.212  -0.426   1.753  0.00  0.00           H+0
HETATM   54  H   UNK     0       7.202   0.742   2.696  0.00  0.00           H+0
CONECT    1    2   29   30   31                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    5   32                                             
CONECT    4    3   33   34   35                                             
CONECT    5    3    6   20   36                                             
CONECT    6    5    7   37                                                  
CONECT    7    6    8   38                                                  
CONECT    8    7    9   39                                                  
CONECT    9    8   10   40                                                  
CONECT   10    9   11   16                                                  
CONECT   11   10   12   41                                                  
CONECT   12   11   13   42                                                  
CONECT   13   12   14   43                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14   44                                                       
CONECT   16   14   17   10                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   45                                                       
CONECT   20    5   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22   46   47   48                                             
CONECT   24   22   25   49                                                  
CONECT   25   24   26   27   50                                             
CONECT   26   25   27                                                       
CONECT   27   26   28   25   51                                             
CONECT   28   27   52   53   54                                             
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    3                                                            
CONECT   33    4                                                            
CONECT   34    4                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    8                                                            
CONECT   40    9                                                            
CONECT   41   11                                                            
CONECT   42   12                                                            
CONECT   43   13                                                            
CONECT   44   15                                                            
CONECT   45   19                                                            
CONECT   46   23                                                            
CONECT   47   23                                                            
CONECT   48   23                                                            
CONECT   49   24                                                            
CONECT   50   25                                                            
CONECT   51   27                                                            
CONECT   52   28                                                            
CONECT   53   28                                                            
CONECT   54   28                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  110    0
END

RDKit          3D

54 55  0  0  0  0  0  0  0  0999 V2000
    0.4325   -3.6167   -0.2651 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9998   -2.4317   -0.7299 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6460   -1.7048    0.2813 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1705   -1.9633    0.1067 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3912   -0.2788    0.1391 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0409    0.2551    0.1797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1113   -0.3294    0.1305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3887    0.4180    0.1886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5556   -0.2077    0.1360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8381    0.5016    0.1910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8956    1.8762    0.3018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0709    2.5992    0.3580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2513    1.9192    0.3011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2510    0.5640    0.1918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4654   -0.0971    0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0400   -0.1678    0.1349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1505   -1.5907    0.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3187   -2.1254   -0.0252 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1280   -2.4989   -0.0515 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0682    0.3120   -1.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3538    0.2948   -2.1181 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3768    0.8704   -1.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8670    1.3449   -2.4728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2017    1.0072   -0.1320 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5670    1.5975   -0.2748 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7317    2.6541    0.7525 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5521    1.4158    0.7614 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3332    0.6566    2.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0513   -4.0947   -1.1395 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2233   -4.3413    0.0513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2968   -3.5134    0.5285 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4714   -2.1709    1.2912 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5478   -1.6171   -0.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7484   -1.6051    0.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3159   -3.0978    0.1433 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9606    0.2714    1.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0081    1.3627    0.2667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1626   -1.3728    0.0452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3155    1.4680    0.2734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4585   -1.2802    0.0497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9646    2.4200    0.3472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0089    3.6753    0.4449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1762    2.4668    0.3437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3210    0.4280    0.1772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9655   -3.0733   -0.8497 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7769    0.7874   -2.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1030    2.4253   -2.3420 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0597    1.2940   -3.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9229    0.7110    0.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8824    1.9371   -1.2611 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6089    1.6559    0.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4268    0.9334    2.5793 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2118   -0.4258    1.7527 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2018    0.7424    2.6956 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
  5 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 22 24  2  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 16 10  1  0
 27 25  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  3 32  1  1
  4 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  1
  6 37  1  0
  7 38  1  0
  8 39  1  0
  9 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 15 44  1  0
 19 45  1  0
 23 46  1  0
 23 47  1  0
 23 48  1  0
 24 49  1  0
 25 50  1  6
 27 51  1  6
 28 52  1  0
 28 53  1  0
 28 54  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-Hydroxy-6-[(3E,5S,7E)-5-[(1S)-1-methoxyethyl]-7-methyl-8-(3-methyloxiran-2-yl)-6-oxoocta-1,3,7-trien-1-yl]benzoate	Generator

Chemical Formula

C₂₂H₂₆O₆

Average Mass

386.4440 Da

Monoisotopic Mass

386.17294 Da

IUPAC Name

2-hydroxy-6-[(1E,3E,5S,7E)-5-[(1S)-1-methoxyethyl]-7-methyl-8-[(2R,3S)-3-methyloxiran-2-yl]-6-oxoocta-1,3,7-trien-1-yl]benzoic acid

Traditional Name

2-hydroxy-6-[(1E,3E,5S,7E)-5-[(1S)-1-methoxyethyl]-7-methyl-8-[(2R,3S)-3-methyloxiran-2-yl]-6-oxoocta-1,3,7-trien-1-yl]benzoic acid

CAS Registry Number

Not Available

SMILES

CO[C@@H](C)[C@H](\C=C\C=C\C1=C(C(O)=O)C(O)=CC=C1)C(=O)C(\C)=C\C1OC1C

InChI Identifier

InChI=1S/C22H26O6/c1-13(12-19-15(3)28-19)21(24)17(14(2)27-4)10-6-5-8-16-9-7-11-18(23)20(16)22(25)26/h5-12,14-15,17,19,23H,1-4H3,(H,25,26)/b8-5+,10-6+,13-12+/t14-,15?,17-,19?/m0/s1

InChI Key

WNSZZRDXVFFVPW-IDOQMONCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp. C39	NPAtlas	10604763

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.47	ALOGPS
logP	4.61	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	2.51	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	96.36 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	109.63 m³·mol⁻¹	ChemAxon
Polarizability	42.66 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020506

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78438743

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

100997396

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hayashi K, Nozaki H: Isolation and characterization of gibbestatin B, an inhibitor of gibberellin-induced expression of alpha-amylase, and gibbestatin C from streptomycetaes. J Antibiot (Tokyo). 1999 Oct;52(10):917-20. doi: 10.7164/antibiotics.52.917. [PubMed:10604763 ]

Showing NP-Card for Gibbestatin B (NP0003113)

MOL for NP0003113 (Gibbestatin B)

3D MOL for NP0003113 (Gibbestatin B)

3D SDF for NP0003113 (Gibbestatin B)

3D-SDF for NP0003113 (Gibbestatin B)

PDB for NP0003113 (Gibbestatin B)

3D PDB for NP0003113 (Gibbestatin B)

SMILES for NP0003113 (Gibbestatin B)

INCHI for NP0003113 (Gibbestatin B)

Structure for NP0003113 (Gibbestatin B)

3D Structure for NP0003113 (Gibbestatin B)