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Record Information
Version2.0
Created at2020-12-09 00:12:04 UTC
Updated at2021-07-15 16:45:32 UTC
NP-MRD IDNP0003112
Secondary Accession NumbersNone
Natural Product Identification
Common NameVinylamycin
Provided ByNPAtlasNPAtlas Logo
Description Vinylamycin is found in Streptomyces and Streptomyces sp. MI982-63F1. Vinylamycin was first documented in 1999 (PMID: 10604756). Based on a literature review very few articles have been published on (3R,6S,9Z)-5,8,13-trihydroxy-14-(1-hydroxy-4-methyldecan-3-yl)-6-methyl-11-methylidene-3-(propan-2-yl)-1-oxa-4,7,12-triazacyclotetradeca-4,7,9,12-tetraen-2-one.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC26H43N3O6
Average Mass493.6450 Da
Monoisotopic Mass493.31519 Da
IUPAC Name(3R,6S,9Z)-14-[(4S)-1-hydroxy-4-methyldecan-3-yl]-6-methyl-11-methylidene-3-(propan-2-yl)-1-oxa-4,7,12-triazacyclotetradec-9-ene-2,5,8,13-tetrone
Traditional Name(3R,6S,9Z)-14-[(4S)-1-hydroxy-4-methyldecan-3-yl]-3-isopropyl-6-methyl-11-methylidene-1-oxa-4,7,12-triazacyclotetradec-9-ene-2,5,8,13-tetrone
CAS Registry NumberNot Available
SMILES
CCCCCCC(C)C(CCO)C1OC(=O)[C@H](NC(=O)[C@H](C)NC(=O)\C=C/C(=C)NC1=O)C(C)C
InChI Identifier
InChI=1S/C26H43N3O6/c1-7-8-9-10-11-17(4)20(14-15-30)23-25(33)27-18(5)12-13-21(31)28-19(6)24(32)29-22(16(2)3)26(34)35-23/h12-13,16-17,19-20,22-23,30H,5,7-11,14-15H2,1-4,6H3,(H,27,33)(H,28,31)(H,29,32)/b13-12-/t17?,19-,20?,22+,23?/m0/s1
InChI KeyQWBWNXCMGNCVQC-LCIDYIMKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces sp. MI982-63F1Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.11ALOGPS
logP2.65ChemAxon
logS-4.5ALOGPS
pKa (Strongest Acidic)11.06ChemAxon
pKa (Strongest Basic)-0.54ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area133.83 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity134.58 m³·mol⁻¹ChemAxon
Polarizability54.16 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA000596
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Igarashi M, Shida T, Sasaki Y, Kinoshita N, Naganawa H, Hamada M, Takeuchi T: Vinylamycin, a new depsipeptide antibiotic, from Streptomyces sp. J Antibiot (Tokyo). 1999 Oct;52(10):873-9. doi: 10.7164/antibiotics.52.873. [PubMed:10604756 ]