Np mrd loader

Record Information
Version1.0
Created at2020-11-23 19:38:10 UTC
Updated at2021-08-12 19:51:53 UTC
NP-MRD IDNP0002696
Secondary Accession NumbersNone
Natural Product Identification
Common Namebeta-gentiobiose
Provided ByBMRBBMRB logo
DescriptionBeta-D-Glcp-(1->6)-beta-D-Glcp is also known as b-D-GLC-(1->6)-b-D-GLC or beta-gentiobiose. beta-gentiobiose is found in Gentiana andrewsii, Gentiana macrophylla and Gentianopsis grandis. It was first documented in 2008 (PMID: 17984079). Based on a literature review a significant number of articles have been published on beta-D-Glcp-(1->6)-beta-D-Glcp (PMID: 19443021) (PMID: 25568069) (PMID: 31537530) (PMID: 34606556) (PMID: 34597702).
Structure
Thumb
Synonyms
ValueSource
6-O-beta-D-Glucopyranosyl-beta-D-glucopyranoseChEBI
beta-D-GLC-(1->6)-beta-D-GLCChEBI
beta-D-Glucosyl-(1->6)-beta-D-glucoseChEBI
beta-GentiobioseChEBI
GLCB1-6GLCBChEBI
Glcbeta1-6glcbetaChEBI
6-O-b-D-Glucopyranosyl-b-D-glucopyranoseGenerator
6-O-Β-D-glucopyranosyl-β-D-glucopyranoseGenerator
b-D-GLC-(1->6)-b-D-GLCGenerator
Β-D-GLC-(1->6)-β-D-GLCGenerator
b-D-Glucosyl-(1->6)-b-D-glucoseGenerator
Β-D-glucosyl-(1->6)-β-D-glucoseGenerator
b-GentiobioseGenerator
Β-gentiobioseGenerator
b-D-GLCP-(1->6)-b-D-GLCPGenerator
Β-D-GLCP-(1->6)-β-D-GLCPGenerator
AmygdalosePhytoBank, MeSH
D-GentiobiosePhytoBank, MeSH
6-O-beta-D-Glucopyranosyl-D-glucosePhytoBank
6-O-β-D-Glucopyranosyl-D-glucosePhytoBank
6-(beta-D-Glucosido)-D-glucosePhytoBank
6-(β-D-Glucosido)-D-glucosePhytoBank
6-O-beta-D-glucopyranosyl-D-glucopyranosePhytoBank
6-O-β-D-glucopyranosyl-D-glucopyranosePhytoBank
beta-D-Glc-(1->6)-D-GlcPhytoBank
β-D-Glc-(1→6)-D-GlcPhytoBank
beta-D-Glcp-(1->6)-D-GlcpPhytoBank
β-D-Glcp-(1→6)-D-GlcpPhytoBank
beta-D-glucopyranosyl-(1->6)-D-glucosePhytoBank
β-D-glucopyranosyl-(1→6)-D-glucosePhytoBank
beta-D-glucosyl-(1->6)-D-glucosePhytoBank
β-D-glucosyl-(1→6)-D-glucosePhytoBank
D-Glc(beta1->6)D-GlcPhytoBank
D-Glc(β1→6)D-GlcPhytoBank
beta-D-Glc-(1→6)-D-GlcPhytoBank
beta-D-Glcp-(1→6)-D-GlcpPhytoBank
beta-D-glucopyranosyl-(1→6)-D-glucosePhytoBank
beta-D-glucosyl-(1→6)-D-glucosePhytoBank
D-Glc(beta1→6)D-GlcPhytoBank
Chemical FormulaC12H22O11
Average Mass342.2970 Da
Monoisotopic Mass342.11621 Da
IUPAC Name(2R,3R,4S,5S,6R)-6-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxane-2,3,4,5-tetrol
Traditional Namegentiobiose
CAS Registry NumberNot Available
SMILES
OC[C@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O
InChI Identifier
InChI=1S/C12H22O11/c13-1-3-5(14)8(17)10(19)12(23-3)21-2-4-6(15)7(16)9(18)11(20)22-4/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9-,10-,11-,12-/m1/s1
InChI KeyDLRVVLDZNNYCBX-LIZSDCNHSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, experimental)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Averrhoa carambolaKNApSAcK Database
Gentiana andrewsiiLOTUS Database
Gentiana macrophyllaLOTUS Database
Gentiana stramineaKNApSAcK Database
Gentianopsis grandisLOTUS Database
Triticum aestivumKNApSAcK Database
Species Where Detected
Species NameSourceReference
Phoma medicaginisKNApSAcK Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3ALOGPS
logP-4.7ChemAxon
logS0.17ALOGPS
pKa (Strongest Acidic)11.25ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area189.53 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity68.34 m³·mol⁻¹ChemAxon
Polarizability31.52 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00053253
Chemspider ID390156
KEGG Compound IDC08240
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID71422
Good Scents IDNot Available
References
General References
  1. Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, Nakatani E, Schulte CF, Tolmie DE, Kent Wenger R, Yao H, Markley JL: BioMagResBank. Nucleic Acids Res. 2008 Jan;36(Database issue):D402-8. doi: 10.1093/nar/gkm957. Epub 2007 Nov 4. [PubMed:17984079 ]
  2. von Gunten S, Smith DF, Cummings RD, Riedel S, Miescher S, Schaub A, Hamilton RG, Bochner BS: Intravenous immunoglobulin contains a broad repertoire of anticarbohydrate antibodies that is not restricted to the IgG2 subclass. J Allergy Clin Immunol. 2009 Jun;123(6):1268-76.e15. doi: 10.1016/j.jaci.2009.03.013. Epub 2009 May 13. [PubMed:19443021 ]
  3. Schneider C, Smith DF, Cummings RD, Boligan KF, Hamilton RG, Bochner BS, Miescher S, Simon HU, Pashov A, Vassilev T, von Gunten S: The human IgG anti-carbohydrate repertoire exhibits a universal architecture and contains specificity for microbial attachment sites. Sci Transl Med. 2015 Jan 7;7(269):269ra1. doi: 10.1126/scitranslmed.3010524. [PubMed:25568069 ]
  4. Jandus P, Boligan KF, Smith DF, de Graauw E, Grimbacher B, Jandus C, Abdelhafez MM, Despont A, Bovin N, Simon D, Rieben R, Simon HU, Cummings RD, von Gunten S: The architecture of the IgG anti-carbohydrate repertoire in primary antibody deficiencies. Blood. 2019 Nov 28;134(22):1941-1950. doi: 10.1182/blood.2019001705. [PubMed:31537530 ]
  5. Li J, Wu H, Liu Y, Nan J, Park HJ, Chen Y, Yang L: The chemical structure and immunomodulatory activity of an exopolysaccharide produced by Morchella esculenta under submerged fermentation. Food Funct. 2021 Oct 4;12(19):9327-9338. doi: 10.1039/d1fo01683k. [PubMed:34606556 ]
  6. Feng X, Du C, Wang C: Structural characterization of polysaccharide from yellow sweet potato and ameliorates DSS-induced mice colitis by active GPR41/MEK/ERK 1/2 signaling pathway. Int J Biol Macromol. 2021 Sep 28. pii: S0141-8130(21)02103-6. doi: 10.1016/j.ijbiomac.2021.09.175. [PubMed:34597702 ]