Record Information |
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Version | 1.0 |
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Created at | 2020-11-23 18:25:47 UTC |
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Updated at | 2021-08-12 19:51:43 UTC |
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NP-MRD ID | NP0002637 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | D-Xylonate |
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Provided By | BMRB![BMRB logo](/attributions/logo_bmrb.svg) |
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Description | D-lyxonic acid is also known as lyxonate. D-lyxonic acid is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. D-Xylonate is found in Bergera koenegii, Carica papaya , Citrus sinensis and Murraya paniculata . It was first documented in 2002 (PMID: 11841815). Based on a literature review very few articles have been published on D-lyxonic acid (PMID: 17984079) (PMID: 30987109) (PMID: 22541300) (PMID: 33146025) (PMID: 33392496) (PMID: 31731561). |
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Structure | [H][C@@](O)(CO)[C@]([H])(O)[C@]([H])(O)C(O)=O InChI=1S/C5H10O6/c6-1-2(7)3(8)4(9)5(10)11/h2-4,6-9H,1H2,(H,10,11)/t2-,3+,4+/m1/s1 |
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Synonyms | Value | Source |
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(2S,3S,4R)-2,3,4,5-Tetrahydroxypentanoic acid | ChEBI | Lyxonic acid | ChEBI | (2S,3S,4R)-2,3,4,5-Tetrahydroxypentanoate | Generator | Lyxonate | Generator | D-Lyxonate | Generator |
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Chemical Formula | C5H10O6 |
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Average Mass | 166.1293 Da |
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Monoisotopic Mass | 166.04774 Da |
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IUPAC Name | (2S,3S,4R)-2,3,4,5-tetrahydroxypentanoic acid |
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Traditional Name | (2S,3S,4R)-2,3,4,5-tetrahydroxypentanoic acid |
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CAS Registry Number | Not Available |
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SMILES | [H][C@@](O)(CO)[C@]([H])(O)[C@]([H])(O)C(O)=O |
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InChI Identifier | InChI=1S/C5H10O6/c6-1-2(7)3(8)4(9)5(10)11/h2-4,6-9H,1H2,(H,10,11)/t2-,3+,4+/m1/s1 |
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InChI Key | QXKAIJAYHKCRRA-UZBSEBFBSA-N |
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Experimental Spectra |
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| Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, experimental) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Predicted Spectra |
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| Not Available | Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | This compound belongs to the class of organic compounds known as sugar acids and derivatives. These are compounds containing a saccharide unit which bears a carboxylic acid group. |
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Kingdom | Organic compounds |
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Super Class | Organic oxygen compounds |
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Class | Organooxygen compounds |
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Sub Class | Carbohydrates and carbohydrate conjugates |
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Direct Parent | Sugar acids and derivatives |
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Alternative Parents | |
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Substituents | - Pentose monosaccharide
- Beta-hydroxy acid
- Sugar acid
- Short-chain hydroxy acid
- Alpha-hydroxy acid
- Fatty acid
- Hydroxy acid
- Monosaccharide
- Secondary alcohol
- Monocarboxylic acid or derivatives
- Carboxylic acid
- Carboxylic acid derivative
- Polyol
- Primary alcohol
- Alcohol
- Carbonyl group
- Hydrocarbon derivative
- Organic oxide
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, Nakatani E, Schulte CF, Tolmie DE, Kent Wenger R, Yao H, Markley JL: BioMagResBank. Nucleic Acids Res. 2008 Jan;36(Database issue):D402-8. doi: 10.1093/nar/gkm957. Epub 2007 Nov 4. [PubMed:17984079 ]
- Zhang G, Geng H, Zhao C, Li F, Li ZF, Lun B, Wang C, Yu H, Bie S, Li Z: Chemical Constituents with Inhibitory Activity of NO Production from a Wild Edible Mushroom, Russula vinosa Lindbl, May Be Its Nutritional Ingredients. Molecules. 2019 Apr 3;24(7). pii: molecules24071305. doi: 10.3390/molecules24071305. [PubMed:30987109 ]
- Singh AK, Singh V, Singh AK, Gupta N, Singh B: Kinetics and mechanism of Ru(III) and Hg(II) co-catalyzed oxidation of D-galactose and D-ribose by N-bromoacetamide in perchloric acid. Carbohydr Res. 2002 Feb 18;337(4):345-51. doi: 10.1016/s0008-6215(01)00319-6. [PubMed:11841815 ]
- Kumar Singh A, Singh M, Srivastava J, Rahmani S: Kinetics of the oxidation of lactose by copper(II) complexed with bipyridyl in alkaline medium using chloro-complex of rhodium(III) in its nano-concentration range as homogeneous catalyst: a spectrophotometric study. Carbohydr Res. 2012 Jun 1;354:94-101. doi: 10.1016/j.carres.2012.03.035. Epub 2012 Apr 10. [PubMed:22541300 ]
- Liu SZ, Tang XX, He FM, Jia JX, Hu H, Xie BY, Li MY, Qiu YK: Two new compounds from a mangrove sediment-derived fungus Penicillium polonicum H175. Nat Prod Res. 2020 Nov 4:1-9. doi: 10.1080/14786419.2020.1837811. [PubMed:33146025 ]
- Foss AJ, Miles CO, Wilkins AL, Rise F, Trovik KW, Cieslik K, Aubel MT: Analysis of total microcystins and nodularins by oxidative cleavage of their ADMAdda, DMAdda, and Adda moieties. Anal Chim Acta X. 2020 Sep 2;6:100060. doi: 10.1016/j.acax.2020.100060. eCollection 2020 Nov. [PubMed:33392496 ]
- Trocha A, Piotrowska DG, Glowacka IE: Synthesis of Enantiomerically Pure N-Boc-Protected 1,2,3-Triaminopropylphosphonates and 1,2-Diamino-3-Hydroxypropylphosphonates. Molecules. 2019 Oct 25;24(21). pii: molecules24213857. doi: 10.3390/molecules24213857. [PubMed:31731561 ]
- Dreger A, Kharwb O, Agoglitta O, Bulbul EF, Melesina J, Sippl W, Holl R: Chiral Pool Synthesis, Biological Evaluation and Molecular Docking Studies of C-Furanosidic LpxC Inhibitors. ChemMedChem. 2019 Apr 17;14(8):871-886. doi: 10.1002/cmdc.201900068. Epub 2019 Mar 12. [PubMed:30801965 ]
- Authors unspecified: Mupirocin. 2006. [PubMed:30000489 ]
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