Np mrd loader

Record Information
Version2.0
Created at2020-10-21 16:38:20 UTC
Updated at2024-09-12 20:06:27 UTC
NP-MRD IDNP0001803
Secondary Accession NumbersNone
Natural Product Identification
Common NameNaphthomycin K
Provided ByNPAtlasNPAtlas Logo
DescriptionNaphthomycin K belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. Naphthomycin K is found in Streptomyces and Streptomyces sp. (strain Go 40/10). Naphthomycin K was first documented in 1999 (PMID: 10513843). Based on a literature review very few articles have been published on Naphthomycin K (PMID: 17965482).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC39H45NO11
Average Mass703.7850 Da
Monoisotopic Mass703.29926 Da
IUPAC Name(7Z,9R,10S,11S,20S,21S)-4,10,14,20,31-pentahydroxy-9-(hydroxymethyl)-3,7,11,17,21-pentamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,13,16,22,24,26,30-decaene-6,18,28,32,34-pentone
Traditional Name(7Z,9R,10S,11S,20S,21S)-4,10,14,20,31-pentahydroxy-9-(hydroxymethyl)-3,7,11,17,21-pentamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,13,16,22,24,26,30-decaene-6,18,28,32,34-pentone
CAS Registry NumberNot Available
SMILES
[H]OC1=C2N([H])C(=O)C([H])=C([H])C([H])=C([H])C([H])=C([H])[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])C(=O)C(=C([H])C([H])([H])C(O[H])=C([H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(\C([H])=C(/C(=O)C3=C(O[H])C(=C([H])C(C2=O)=C3C1=O)C([H])([H])[H])C([H])([H])[H])C([H])([H])O[H])C([H])([H])[H]
InChI Identifier
InChI=1/C39H45NO11/c1-20-10-8-6-7-9-11-30(45)40-33-37(49)27-17-24(5)36(48)32(31(27)38(50)39(33)51)35(47)23(4)16-25(19-41)34(46)22(3)13-15-26(42)14-12-21(2)29(44)18-28(20)43/h6-12,15-17,20,22,25,28,34,41-43,46,48,51H,13-14,18-19H2,1-5H3,(H,40,45)/b7-6+,10-8+,11-9+,21-12-,23-16-,26-15+/t20-,22-,25+,28-,34-/s2
InChI KeyLMFQVLHFSMIMQA-OYBJEICFNA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces sp. (strain Go 40/10)Bacteria
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassDiterpenoids
Direct ParentDiterpenoids
Alternative Parents
Substituents
  • Diterpenoid
  • Naphthoquinone
  • Naphthalene
  • Aryl ketone
  • Quinone
  • B'-hydroxy-alpha,beta-unsaturated-ketone
  • Alpha-branched alpha,beta-unsaturated-ketone
  • Benzenoid
  • N-acyl-amine
  • Beta-hydroxy ketone
  • Vinylogous amide
  • Vinylogous acid
  • Alpha,beta-unsaturated ketone
  • Enone
  • Alpha-hydroxy ketone
  • Acryloyl-group
  • Cyclic ketone
  • Secondary alcohol
  • Lactam
  • Ketone
  • Carboxamide group
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.33ChemAxon
pKa (Strongest Acidic)5.37ChemAxon
pKa (Strongest Basic)-2.6ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area218.76 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity200.77 m³·mol⁻¹ChemAxon
Polarizability75.5 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA011553
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Schiewe HJ, Zeeck A: Cineromycins, gamma-butyrolactones and ansamycins by analysis of the secondary metabolite pattern created by a single strain of Streptomyces. J Antibiot (Tokyo). 1999 Jul;52(7):635-42. doi: 10.7164/antibiotics.52.635. [PubMed:10513843 ]
  2. Lu C, Shen Y: A novel ansamycin, naphthomycin K from Streptomyces sp. J Antibiot (Tokyo). 2007 Oct;60(10):649-53. doi: 10.1038/ja.2007.84. [PubMed:17965482 ]