NP-MRD: Showing NP-Card for Cineromycin B (NP0001799)

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Record Information

Version

1.0

Created at

2020-10-21 16:38:10 UTC

Updated at

2021-07-15 16:45:18 UTC

NP-MRD ID

NP0001799

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cineromycin B

Provided By

NPAtlas

Description

Cineromycin B is found in Streptomyces, Streptomyces cinerochromogenes and Streptomyces cinerochromogenes No.50. It was first documented in 1999 (PMID: 10513843). Based on a literature review very few articles have been published on (3Z,5R,6Z,8S,9Z,13S,14R)-5,8-dihydroxy-5,9,13,14-tetramethyl-1-oxacyclotetradeca-3,6,9-trien-2-one (PMID: 26092481) (PMID: 25250719) (PMID: 19842066).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117443D          

 47 47  0  0  0  0            999 V2000
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   -1.3707   -2.2393    0.3232 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9612   -0.3505   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2012   -0.5321   -1.7095 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2373    0.7700    0.1216 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 47 47  0  0  0  0  0  0  0  0999 V2000
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   -1.3707   -2.2393    0.3232 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242117443D          

 47 47  0  0  0  0            999 V2000
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  9 36  1  0  0  0  0
  9 37  1  0  0  0  0
 13 38  1  0  0  0  0
 14 39  1  0  0  0  0
 16 40  1  0  0  0  0
 16 41  1  0  0  0  0
 16 42  1  0  0  0  0
 17 43  1  0  0  0  0
 18 44  1  0  0  0  0
 19 45  1  0  0  0  0
 20 46  1  1  0  0  0
 21 47  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0001799

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])\C([H])=C([H])/[C@@](O[H])(\C([H])=C([H])/C(=O)O[C@]([H])(C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])\C([H])=C1\C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H26O4/c1-12-6-5-7-13(2)15(18)8-10-17(4,20)11-9-16(19)21-14(12)3/h7-12,14-15,18,20H,5-6H2,1-4H3/b10-8-,11-9-,13-7-/t12-,14+,15-,17+/m0/s1

> <INCHI_KEY>
RLNOIXQIRICASI-HTNMZXOESA-N

> <FORMULA>
C17H26O4

> <MOLECULAR_WEIGHT>
294.391

> <EXACT_MASS>
294.183109317

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
47

> <JCHEM_AVERAGE_POLARIZABILITY>
32.42453977364595

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3Z,5R,6Z,8S,9Z,13S,14R)-5,8-dihydroxy-5,9,13,14-tetramethyl-1-oxacyclotetradeca-3,6,9-trien-2-one

> <ALOGPS_LOGP>
2.38

> <JCHEM_LOGP>
2.8136613773333323

> <ALOGPS_LOGS>
-3.18

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.563055800229442

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.94535303339823

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1275867075369925

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
85.57720000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.96e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,5R,6Z,8S,9Z,13S,14R)-5,8-dihydroxy-5,9,13,14-tetramethyl-1-oxacyclotetradeca-3,6,9-trien-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 47 47  0  0  0  0  0  0  0  0999 V2000
   -2.5217   -3.1644    0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3707   -2.2393    0.3232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2680   -2.6016    0.9195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8552   -1.6710    1.0555 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7875   -1.6482   -0.1062 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9612   -0.3505   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2012   -0.5321   -1.7095 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2373    0.7700    0.1216 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6734    1.2982   -0.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3362    1.8517    0.0475 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7156    2.5320    1.0745 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0776    3.7822    1.1670 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2458    2.0171    2.0161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4591    1.7232    1.6592 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1329    1.8124    0.3889 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4554    2.1937   -0.8396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9603    3.0211    0.5982 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1979    0.7781    0.2806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8949   -0.4550   -0.0078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4935   -0.8728   -0.2377 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3859   -1.1139   -1.6472 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1739   -4.2327    0.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1603   -3.0286    1.0916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0932   -3.0108   -0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1468   -3.6279    1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5673   -0.6764    1.4582 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4775   -2.0743    1.9321 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8154   -1.9928    0.2177 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4235   -2.4537   -0.8106 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1343   -0.1581   -1.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1544   -1.5510   -2.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2253    0.1870   -2.5266 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1171   -0.5596   -1.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2268    0.3795    1.1554 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6529    2.3038    0.4594 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3659    0.6782    0.5130 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9232    1.4701   -1.1062 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0770    1.8906    3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1019    1.3231    2.4842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8657    1.5334   -1.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2889    2.5258   -1.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9222    3.1773   -0.6699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4900    2.8357    1.4280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2707    1.0442    0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6989   -1.1813   -0.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7581   -0.1746    0.1242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6488   -1.7579   -1.7635 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  1  1
 15 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 20  2  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  6 30  1  6
  7 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  1
  9 35  1  0
  9 36  1  0
  9 37  1  0
 13 38  1  0
 14 39  1  0
 16 40  1  0
 16 41  1  0
 16 42  1  0
 17 43  1  0
 18 44  1  0
 19 45  1  0
 20 46  1  1
 21 47  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.522  -3.164   0.175  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.371  -2.239   0.323  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.268  -2.602   0.920  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.855  -1.671   1.056  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.788  -1.648  -0.106  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.961  -0.351  -0.811  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.201  -0.532  -1.710  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.237   0.770   0.122  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.673   1.298  -0.056  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.336   1.852   0.048  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.716   2.532   1.075  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.078   3.782   1.167  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.246   2.017   2.016  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.459   1.723   1.659  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.133   1.812   0.389  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.455   2.194  -0.840  0.00  0.00           C+0
HETATM   17  O   UNK     0      -2.960   3.021   0.598  0.00  0.00           O+0
HETATM   18  C   UNK     0      -3.198   0.778   0.281  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.895  -0.455  -0.008  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.494  -0.873  -0.238  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.386  -1.114  -1.647  0.00  0.00           O+0
HETATM   22  H   UNK     0      -2.174  -4.233   0.151  0.00  0.00           H+0
HETATM   23  H   UNK     0      -3.160  -3.029   1.092  0.00  0.00           H+0
HETATM   24  H   UNK     0      -3.093  -3.011  -0.750  0.00  0.00           H+0
HETATM   25  H   UNK     0      -0.147  -3.628   1.339  0.00  0.00           H+0
HETATM   26  H   UNK     0       0.567  -0.676   1.458  0.00  0.00           H+0
HETATM   27  H   UNK     0       1.478  -2.074   1.932  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.815  -1.993   0.218  0.00  0.00           H+0
HETATM   29  H   UNK     0       1.424  -2.454  -0.811  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.134  -0.158  -1.518  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.154  -1.551  -2.194  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.225   0.187  -2.527  0.00  0.00           H+0
HETATM   33  H   UNK     0       4.117  -0.560  -1.086  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.227   0.380   1.155  0.00  0.00           H+0
HETATM   35  H   UNK     0       3.653   2.304   0.459  0.00  0.00           H+0
HETATM   36  H   UNK     0       4.366   0.678   0.513  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.923   1.470  -1.106  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.077   1.891   3.096  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.102   1.323   2.484  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.866   1.533  -1.430  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.289   2.526  -1.558  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.922   3.177  -0.670  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.490   2.836   1.428  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.271   1.044   0.450  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.699  -1.181  -0.078  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.758  -0.175   0.124  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.649  -1.758  -1.764  0.00  0.00           H+0
CONECT    1    2   22   23   24                                             
CONECT    2    1    3   20                                                  
CONECT    3    2    4   25                                                  
CONECT    4    3    5   26   27                                             
CONECT    5    4    6   28   29                                             
CONECT    6    5    7    8   30                                             
CONECT    7    6   31   32   33                                             
CONECT    8    6    9   10   34                                             
CONECT    9    8   35   36   37                                             
CONECT   10    8   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   38                                                  
CONECT   14   13   15   39                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15   40   41   42                                             
CONECT   17   15   43                                                       
CONECT   18   15   19   44                                                  
CONECT   19   18   20   45                                                  
CONECT   20   19   21    2   46                                             
CONECT   21   20   47                                                       
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    3                                                            
CONECT   26    4                                                            
CONECT   27    4                                                            
CONECT   28    5                                                            
CONECT   29    5                                                            
CONECT   30    6                                                            
CONECT   31    7                                                            
CONECT   32    7                                                            
CONECT   33    7                                                            
CONECT   34    8                                                            
CONECT   35    9                                                            
CONECT   36    9                                                            
CONECT   37    9                                                            
CONECT   38   13                                                            
CONECT   39   14                                                            
CONECT   40   16                                                            
CONECT   41   16                                                            
CONECT   42   16                                                            
CONECT   43   17                                                            
CONECT   44   18                                                            
CONECT   45   19                                                            
CONECT   46   20                                                            
CONECT   47   21                                                            
MASTER        0    0    0    0    0    0    0    0   47    0   94    0
END

RDKit          3D

47 47  0  0  0  0  0  0  0  0999 V2000
   -2.5217   -3.1644    0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3707   -2.2393    0.3232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2680   -2.6016    0.9195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8552   -1.6710    1.0555 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7875   -1.6482   -0.1062 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9612   -0.3505   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2012   -0.5321   -1.7095 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2373    0.7700    0.1216 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6734    1.2982   -0.0557 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3362    1.8517    0.0475 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7156    2.5320    1.0745 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0776    3.7822    1.1670 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2458    2.0171    2.0161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4591    1.7232    1.6592 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1329    1.8124    0.3889 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4554    2.1937   -0.8396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9603    3.0211    0.5982 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1979    0.7781    0.2806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8949   -0.4550   -0.0078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4935   -0.8728   -0.2377 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3859   -1.1139   -1.6472 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1739   -4.2327    0.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1603   -3.0286    1.0916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0932   -3.0108   -0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1468   -3.6279    1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5673   -0.6764    1.4582 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4775   -2.0743    1.9321 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8154   -1.9928    0.2177 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4235   -2.4537   -0.8106 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1343   -0.1581   -1.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1544   -1.5510   -2.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2253    0.1870   -2.5266 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1171   -0.5596   -1.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2268    0.3795    1.1554 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6529    2.3038    0.4594 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3659    0.6782    0.5130 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9232    1.4701   -1.1062 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0770    1.8906    3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1019    1.3231    2.4842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8657    1.5334   -1.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2889    2.5258   -1.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9222    3.1773   -0.6699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4900    2.8357    1.4280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2707    1.0442    0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6989   -1.1813   -0.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7581   -0.1746    0.1242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6488   -1.7579   -1.7635 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  1  1
 15 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 20  2  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  6 30  1  6
  7 31  1  0
  7 32  1  0
  7 33  1  0
  8 34  1  1
  9 35  1  0
  9 36  1  0
  9 37  1  0
 13 38  1  0
 14 39  1  0
 16 40  1  0
 16 41  1  0
 16 42  1  0
 17 43  1  0
 18 44  1  0
 19 45  1  0
 20 46  1  1
 21 47  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(3Z,5R,6Z,8S,9Z,13S,14R)-5,8-Dihydroxy-5,9,13,14-tetramethyl-1-oxacyclotetradeca-3,6,9-trien-2-one	MeSH

Chemical Formula

C₁₇H₂₆O₄

Average Mass

294.3910 Da

Monoisotopic Mass

294.18311 Da

IUPAC Name

(3Z,5R,6Z,8S,9Z,13S,14R)-5,8-dihydroxy-5,9,13,14-tetramethyl-1-oxacyclotetradeca-3,6,9-trien-2-one

Traditional Name

(3Z,5R,6Z,8S,9Z,13S,14R)-5,8-dihydroxy-5,9,13,14-tetramethyl-1-oxacyclotetradeca-3,6,9-trien-2-one

CAS Registry Number

Not Available

SMILES

C[C@H]1CC\C=C(C)/[C@@H](O)\C=C/[C@@](C)(O)\C=C/C(=O)O[C@@H]1C

InChI Identifier

InChI=1S/C17H26O4/c1-12-6-5-7-13(2)15(18)8-10-17(4,20)11-9-16(19)21-14(12)3/h7-12,14-15,18,20H,5-6H2,1-4H3/b10-8-,11-9-,13-7-/t12-,14+,15-,17+/m0/s1

InChI Key

RLNOIXQIRICASI-HTNMZXOESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	10513843
Streptomyces cinerochromogenes	LOTUS Database	35616633
Streptomyces cinerochromogenes No.50	Bacteria	KNApSAcK

Species Where Detected

Species Name	Source	Reference
Streptomyces sp. (strain Go 40/10)	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.38	ALOGPS
logP	2.81	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	13.95	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	85.58 m³·mol⁻¹	ChemAxon
Polarizability	32.42 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA012775

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4948482

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6444600

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Schiewe HJ, Zeeck A: Cineromycins, gamma-butyrolactones and ansamycins by analysis of the secondary metabolite pattern created by a single strain of Streptomyces. J Antibiot (Tokyo). 1999 Jul;52(7):635-42. doi: 10.7164/antibiotics.52.635. [PubMed:10513843 ]
Matsuo H, Kondo Y, Kawasaki T, Imamura N: Cineromycin B isolated from Streptomyces cinerochromogenes inhibits adipocyte differentiation of 3T3-L1 cells via Kruppel-like factors 2 and 3. Life Sci. 2015 Aug 15;135:35-42. doi: 10.1016/j.lfs.2015.05.020. Epub 2015 Jun 17. [PubMed:26092481 ]
Voelz VA, Zhou G: Bayesian inference of conformational state populations from computational models and sparse experimental observables. J Comput Chem. 2014 Nov 15;35(30):2215-24. doi: 10.1002/jcc.23738. Epub 2014 Sep 24. [PubMed:25250719 ]
Elleuch L, Shaaban M, Smaoui S, Mellouli L, Karray-Rebai I, Fourati-Ben Fguira L, Shaaban KA, Laatsch H: Bioactive secondary metabolites from a new terrestrial Streptomyces sp. TN262. Appl Biochem Biotechnol. 2010 Sep;162(2):579-93. doi: 10.1007/s12010-009-8808-4. Epub 2009 Oct 20. [PubMed:19842066 ]

Showing NP-Card for Cineromycin B (NP0001799)

MOL for NP0001799 (Cineromycin B)

3D MOL for NP0001799 (Cineromycin B)

3D SDF for NP0001799 (Cineromycin B)

3D-SDF for NP0001799 (Cineromycin B)

PDB for NP0001799 (Cineromycin B)

3D PDB for NP0001799 (Cineromycin B)

SMILES for NP0001799 (Cineromycin B)

INCHI for NP0001799 (Cineromycin B)

Structure for NP0001799 (Cineromycin B)

3D Structure for NP0001799 (Cineromycin B)