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Record Information
Version2.0
Created at2020-10-21 16:37:13 UTC
Updated at2021-07-15 16:45:15 UTC
NP-MRD IDNP0001777
Secondary Accession NumbersNone
Natural Product Identification
Common NameCC-1065
Provided ByNPAtlasNPAtlas Logo
DescriptionAntibiotic CC 1065 belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring. CC-1065 is found in Streptomyces and Streptomyces zelensis. CC-1065 was first documented in 1978 (PMID: 104946). Based on a literature review a significant number of articles have been published on Antibiotic CC 1065 (PMID: 30018376) (PMID: 19697908) (PMID: 19660031) (PMID: 17455190) (PMID: 15170593) (PMID: 12226100).
Structure
Thumb
Synonyms
ValueSource
Benzo(1,2-b:4,3-b')dipyrrole-3(2H)-carboxamide, 7-((1,6-dihydro-4-hydroxy-5-methoxy-7-((4,5,8,8a-tetrahydro-7-methyl-4-oxocyclopropa(c)pyrrolo(3,2-e)indol-2(1H)-yl)carbonyl)benzo(1,2-b:4,3-b')dipyrrol-3(2H)-yl)carbonyl)-1,6-dihydro-4-hydroxy-5-methoxHMDB
4-Hydroxy-7-(4-hydroxy-5-methoxy-7-{3-methyl-7-oxo-5,10-diazatetracyclo[7.4.0.0,.0,]trideca-2(6),3,8-triene-10-carbonyl}-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl)-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carboximidateGenerator
Chemical FormulaC37H33N7O8
Average Mass703.7120 Da
Monoisotopic Mass703.23906 Da
IUPAC Name4-hydroxy-7-{4-hydroxy-5-methoxy-7-[(1R,12S)-3-methyl-7-oxo-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-triene-10-carbonyl]-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl}-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carboxamide
Traditional Name4-hydroxy-7-{4-hydroxy-5-methoxy-7-[(1R,12S)-3-methyl-7-oxo-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-triene-10-carbonyl]-1H,2H,6H-pyrrolo[3,2-e]indole-3-carbonyl}-5-methoxy-1H,2H,6H-pyrrolo[3,2-e]indole-3-carboxamide
CAS Registry NumberNot Available
SMILES
COC1=C2NC(=CC2=C2CCN(C(N)=O)C2=C1O)C(=O)N1CCC2=C3C=C(NC3=C(OC)C(O)=C12)C(=O)N1CC2CC22C1=CC(=O)C1=C2C(C)=CN1
InChI Identifier
InChI=1S/C37H33N7O8/c1-14-12-39-27-22(45)10-23-37(24(14)27)11-15(37)13-44(23)35(49)21-9-18-16-4-6-42(28(16)30(46)32(51-2)25(18)41-21)34(48)20-8-19-17-5-7-43(36(38)50)29(17)31(47)33(52-3)26(19)40-20/h8-10,12,15,39-41,46-47H,4-7,11,13H2,1-3H3,(H2,38,50)
InChI KeyUOWVMDUEMSNCAV-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces zelensisLOTUS Database
Species Where Detected
Species NameSourceReference
Streptomyces zeelensis sp. n.KNApSAcK Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassPyrroloindoles
Direct ParentPyrroloindoles
Alternative Parents
Substituents
  • Indolecarboxamide derivative
  • Indolecarboxylic acid derivative
  • Pyrroloindole
  • Hydroxyindole
  • Indole
  • N-acyl-piperidine
  • Anisole
  • 2-heteroaryl carboxamide
  • N-acylpyrrolidine
  • Pyrrole-2-carboxamide
  • Pyrrole-2-carboxylic acid or derivatives
  • Aryl ketone
  • Alkyl aryl ether
  • Substituted pyrrole
  • Piperidine
  • Benzenoid
  • Tertiary carboxylic acid amide
  • Heteroaromatic compound
  • Pyrrolidine
  • Pyrrole
  • Vinylogous amide
  • Urea
  • Carboxamide group
  • Carbonic acid derivative
  • Ketone
  • Azacycle
  • Carboxylic acid derivative
  • Ether
  • Organic nitrogen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Carbonyl group
  • Organic oxygen compound
  • Organopnictogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.24ALOGPS
logP0.87ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)8.03ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area210.31 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity189.76 m³·mol⁻¹ChemAxon
Polarizability76.86 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA021089
HMDB IDHMDB0248478
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00018210
Chemspider ID65994
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73240
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hanka LJ, Dietz A, Gerpheide SA, Kuentzel SL, Martin DG: CC-1065 (NSC-298223), a new antitumor antibiotic. Production, in vitro biological activity, microbiological assays and taxonomy of the producing microorganism. J Antibiot (Tokyo). 1978 Dec;31(12):1211-7. doi: 10.7164/antibiotics.31.1211. [PubMed:104946 ]
  2. Jin WB, Wu S, Jian XH, Yuan H, Tang GL: A radical S-adenosyl-L-methionine enzyme and a methyltransferase catalyze cyclopropane formation in natural product biosynthesis. Nat Commun. 2018 Jul 17;9(1):2771. doi: 10.1038/s41467-018-05217-1. [PubMed:30018376 ]
  3. Tietze LF, Krewer B, Major F, Schuberth I: CD-spectroscopy as a powerful tool for investigating the mode of action of unmodified drugs in live cells. J Am Chem Soc. 2009 Sep 16;131(36):13031-6. doi: 10.1021/ja902767f. [PubMed:19697908 ]
  4. Tietze LF, Krewer B: Antibody-directed enzyme prodrug therapy: a promising approach for a selective treatment of cancer based on prodrugs and monoclonal antibodies. Chem Biol Drug Des. 2009 Sep;74(3):205-11. doi: 10.1111/j.1747-0285.2009.00856.x. Epub 2009 Jul 29. [PubMed:19660031 ]
  5. Tietze LF, Major F, Schuberth I, Spiegl DA, Krewer B, Maksimenka K, Bringmann G, Magull J: Selective treatment of cancer: synthesis, biological evaluation and structural elucidation of novel analogues of the antibiotic CC-1065 and the duocarmycins. Chemistry. 2007;13(16):4396-409. doi: 10.1002/chem.200700113. [PubMed:17455190 ]
  6. Baraldi PG, Bovero A, Fruttarolo F, Preti D, Tabrizi MA, Pavani MG, Romagnoli R: DNA minor groove binders as potential antitumor and antimicrobial agents. Med Res Rev. 2004 Jul;24(4):475-528. doi: 10.1002/med.20000. [PubMed:15170593 ]
  7. Kiakos K, Howard TT, Lee M, Hartley JA, McHugh PJ: Saccharomyces cerevisiae RAD5 influences the excision repair of DNA minor groove adducts. J Biol Chem. 2002 Nov 15;277(46):44576-81. doi: 10.1074/jbc.M208169200. Epub 2002 Sep 10. [PubMed:12226100 ]
  8. Tietze LF, Herzig T, Fecher A, Haunert F, Schuberth I: Highly selective glycosylated prodrugs of cytostatic CC-1065 analogues for antibody-directed enzyme tumor therapy. Chembiochem. 2001 Oct 1;2(10):758-65. doi: 10.1002/1439-7633(20011001)2:10<758::AID-CBIC758>3.0.CO;2-G. [PubMed:11948858 ]
  9. Park HJ: Evidence for a common molecular basis for sequence recognition of N3-guanine and N3-adenine DNA adducts involving the covalent bonding reaction of (+)-CC-1065. Arch Pharm Res. 2002 Feb;25(1):11-24. doi: 10.1007/BF02975255. [PubMed:11885687 ]