NP-MRD: Showing NP-Card for Pyrisulfoxin A (NP0001775)

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Record Information

Version

2.0

Created at

2020-10-21 16:22:43 UTC

Updated at

2021-07-15 16:45:14 UTC

NP-MRD ID

NP0001775

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pyrisulfoxin A

Provided By

NPAtlas

Description

Pyrisulfoxin A is found in Streptomyces californicus. Pyrisulfoxin A was first documented in 1999 (PMID: 10480576). Based on a literature review very few articles have been published on (Z)-N-({5-methanesulfinyl-4-methoxy-[2,2'-bipyridine]-6-yl}methylidene)hydroxylamine (PMID: 31100678) (PMID: 29231844).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117443D          

 33 34  0  0  0  0            999 V2000
   -1.4234    2.1210   -2.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0755    1.2982   -1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3186    0.6632   -0.8296 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0449    0.7950   -0.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115    0.1742    0.2254 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2566    0.3288    0.3062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9942    1.0950   -0.5505 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3831    1.2091   -0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0276    0.5345    0.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2634   -0.2291    1.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352   -0.3108    1.2746 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1294   -0.5917    1.0926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2009   -0.7908    1.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -1.6556    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1216   -2.2165    2.9548 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2360   -1.9926    2.9675 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9534   -0.1479    0.1063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6868   -0.3522    0.0321 S   0  0  1  0  0  4  0  0  0  0  0  0
   -4.1258   -1.8528   -0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3794   -0.2364    1.3609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5660    1.5898   -3.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1203    3.1104   -2.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1127    2.3843   -3.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5182    1.4419   -1.4885 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4776    1.6234   -1.3419 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9261    1.8340   -1.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1002    0.6014    0.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7155   -0.7955    2.2561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8828   -1.8116    2.0299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6359   -1.2468    3.5214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2213   -2.4106   -1.1390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7292   -1.6113   -1.7209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6965   -2.5523   -0.1536 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  5 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 13 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  2  0  0  0  0
 17  3  1  0  0  0  0
 11  6  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  4 24  1  0  0  0  0
  7 25  1  0  0  0  0
  8 26  1  0  0  0  0
  9 27  1  0  0  0  0
 10 28  1  0  0  0  0
 14 29  1  0  0  0  0
 16 30  1  0  0  0  0
 19 31  1  0  0  0  0
 19 32  1  0  0  0  0
 19 33  1  0  0  0  0
M  END

     RDKit          3D

 33 34  0  0  0  0  0  0  0  0999 V2000
   -1.4234    2.1210   -2.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0755    1.2982   -1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3186    0.6632   -0.8296 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0449    0.7950   -0.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115    0.1742    0.2254 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2566    0.3288    0.3062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9942    1.0950   -0.5505 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3831    1.2091   -0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0276    0.5345    0.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2634   -0.2291    1.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352   -0.3108    1.2746 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1294   -0.5917    1.0926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2009   -0.7908    1.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -1.6556    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1216   -2.2165    2.9548 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2360   -1.9926    2.9675 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9534   -0.1479    0.1063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6868   -0.3522    0.0321 S   0  0  0  0  0  4  0  0  0  0  0  0
   -4.1258   -1.8528   -0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3794   -0.2364    1.3609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5660    1.5898   -3.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1203    3.1104   -2.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1127    2.3843   -3.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5182    1.4419   -1.4885 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4776    1.6234   -1.3419 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9261    1.8340   -1.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1002    0.6014    0.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7155   -0.7955    2.2561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8828   -1.8116    2.0299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6359   -1.2468    3.5214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2213   -2.4106   -1.1390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7292   -1.6113   -1.7209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6965   -2.5523   -0.1536 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  5 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 13 17  2  0
 17 18  1  0
 18 19  1  1
 18 20  2  0
 17  3  1  0
 11  6  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  4 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
 10 28  1  0
 14 29  1  0
 16 30  1  0
 19 31  1  0
 19 32  1  0
 19 33  1  0
M  END


  Mrv1652306242117443D          

 33 34  0  0  0  0            999 V2000
   -1.4234    2.1210   -2.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0755    1.2982   -1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3186    0.6632   -0.8296 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0449    0.7950   -0.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115    0.1742    0.2254 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2566    0.3288    0.3062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9942    1.0950   -0.5505 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3831    1.2091   -0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0276    0.5345    0.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2634   -0.2291    1.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352   -0.3108    1.2746 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1294   -0.5917    1.0926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2009   -0.7908    1.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -1.6556    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1216   -2.2165    2.9548 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2360   -1.9926    2.9675 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9534   -0.1479    0.1063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6868   -0.3522    0.0321 S   0  0  1  0  0  4  0  0  0  0  0  0
   -4.1258   -1.8528   -0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3794   -0.2364    1.3609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5660    1.5898   -3.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1203    3.1104   -2.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1127    2.3843   -3.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5182    1.4419   -1.4885 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4776    1.6234   -1.3419 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9261    1.8340   -1.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1002    0.6014    0.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7155   -0.7955    2.2561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8828   -1.8116    2.0299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6359   -1.2468    3.5214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2213   -2.4106   -1.1390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7292   -1.6113   -1.7209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6965   -2.5523   -0.1536 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  5 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 13 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  2  0  0  0  0
 17  3  1  0  0  0  0
 11  6  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  4 24  1  0  0  0  0
  7 25  1  0  0  0  0
  8 26  1  0  0  0  0
  9 27  1  0  0  0  0
 10 28  1  0  0  0  0
 14 29  1  0  0  0  0
 16 30  1  0  0  0  0
 19 31  1  0  0  0  0
 19 32  1  0  0  0  0
 19 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0001775

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O\N=C(\[H])C1=C(C(OC([H])([H])[H])=C([H])C(=N1)C1=C([H])C([H])=C([H])C([H])=N1)[S@](=O)C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C13H13N3O3S/c1-19-12-7-10(9-5-3-4-6-14-9)16-11(8-15-17)13(12)20(2)18/h3-8,17H,1-2H3/b15-8-/t20-/m1/s1

> <INCHI_KEY>
PSADOHLLXYEDFL-NVNXTCNLSA-N

> <FORMULA>
C13H13N3O3S

> <MOLECULAR_WEIGHT>
291.33

> <EXACT_MASS>
291.067762465

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
29.291822444397106

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(Z)-N-({5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-yl}methylidene)hydroxylamine

> <ALOGPS_LOGP>
1.15

> <JCHEM_LOGP>
0.9290955876666669

> <ALOGPS_LOGS>
-2.07

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.18569720450875

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.55685531693632

> <JCHEM_PKA_STRONGEST_BASIC>
2.8297451431145193

> <JCHEM_POLAR_SURFACE_AREA>
84.67000000000002

> <JCHEM_REFRACTIVITY>
76.9817

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.50e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(Z)-N-({5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-yl}methylidene)hydroxylamine

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 33 34  0  0  0  0  0  0  0  0999 V2000
   -1.4234    2.1210   -2.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0755    1.2982   -1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3186    0.6632   -0.8296 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0449    0.7950   -0.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115    0.1742    0.2254 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2566    0.3288    0.3062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9942    1.0950   -0.5505 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3831    1.2091   -0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0276    0.5345    0.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2634   -0.2291    1.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352   -0.3108    1.2746 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1294   -0.5917    1.0926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2009   -0.7908    1.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -1.6556    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1216   -2.2165    2.9548 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2360   -1.9926    2.9675 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9534   -0.1479    0.1063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6868   -0.3522    0.0321 S   0  0  0  0  0  4  0  0  0  0  0  0
   -4.1258   -1.8528   -0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3794   -0.2364    1.3609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5660    1.5898   -3.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1203    3.1104   -2.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1127    2.3843   -3.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5182    1.4419   -1.4885 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4776    1.6234   -1.3419 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9261    1.8340   -1.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1002    0.6014    0.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7155   -0.7955    2.2561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8828   -1.8116    2.0299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6359   -1.2468    3.5214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2213   -2.4106   -1.1390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7292   -1.6113   -1.7209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6965   -2.5523   -0.1536 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  5 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 13 17  2  0
 17 18  1  0
 18 19  1  1
 18 20  2  0
 17  3  1  0
 11  6  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  4 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
 10 28  1  0
 14 29  1  0
 16 30  1  0
 19 31  1  0
 19 32  1  0
 19 33  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.423   2.121  -2.755  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.075   1.298  -1.808  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.319   0.663  -0.830  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.045   0.795  -0.736  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.812   0.174   0.225  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.257   0.329   0.306  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.994   1.095  -0.551  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.383   1.209  -0.428  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.028   0.535   0.580  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.263  -0.229   1.428  0.00  0.00           C+0
HETATM   11  N   UNK     0       2.935  -0.311   1.275  0.00  0.00           N+0
HETATM   12  N   UNK     0       0.129  -0.592   1.093  0.00  0.00           N+0
HETATM   13  C   UNK     0      -1.201  -0.791   1.092  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.841  -1.656   2.069  0.00  0.00           C+0
HETATM   15  N   UNK     0      -1.122  -2.216   2.955  0.00  0.00           N+0
HETATM   16  O   UNK     0       0.236  -1.993   2.967  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.953  -0.148   0.106  0.00  0.00           C+0
HETATM   18  S   UNK     0      -3.687  -0.352   0.032  0.00  0.00           S+0
HETATM   19  C   UNK     0      -4.126  -1.853  -0.803  0.00  0.00           C+0
HETATM   20  O   UNK     0      -4.379  -0.236   1.361  0.00  0.00           O+0
HETATM   21  H   UNK     0      -0.566   1.590  -3.210  0.00  0.00           H+0
HETATM   22  H   UNK     0      -1.120   3.110  -2.311  0.00  0.00           H+0
HETATM   23  H   UNK     0      -2.113   2.384  -3.587  0.00  0.00           H+0
HETATM   24  H   UNK     0       0.518   1.442  -1.488  0.00  0.00           H+0
HETATM   25  H   UNK     0       2.478   1.623  -1.342  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.926   1.834  -1.138  0.00  0.00           H+0
HETATM   27  H   UNK     0       6.100   0.601   0.702  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.715  -0.796   2.256  0.00  0.00           H+0
HETATM   29  H   UNK     0      -2.883  -1.812   2.030  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.636  -1.247   3.521  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.221  -2.411  -1.139  0.00  0.00           H+0
HETATM   32  H   UNK     0      -4.729  -1.611  -1.721  0.00  0.00           H+0
HETATM   33  H   UNK     0      -4.697  -2.552  -0.154  0.00  0.00           H+0
CONECT    1    2   21   22   23                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   17                                                  
CONECT    4    3    5   24                                                  
CONECT    5    4    6   12                                                  
CONECT    6    5    7   11                                                  
CONECT    7    6    8   25                                                  
CONECT    8    7    9   26                                                  
CONECT    9    8   10   27                                                  
CONECT   10    9   11   28                                                  
CONECT   11   10    6                                                       
CONECT   12    5   13                                                       
CONECT   13   12   14   17                                                  
CONECT   14   13   15   29                                                  
CONECT   15   14   16                                                       
CONECT   16   15   30                                                       
CONECT   17   13   18    3                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   31   32   33                                             
CONECT   20   18                                                            
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    4                                                            
CONECT   25    7                                                            
CONECT   26    8                                                            
CONECT   27    9                                                            
CONECT   28   10                                                            
CONECT   29   14                                                            
CONECT   30   16                                                            
CONECT   31   19                                                            
CONECT   32   19                                                            
CONECT   33   19                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   68    0
END

RDKit          3D

33 34  0  0  0  0  0  0  0  0999 V2000
   -1.4234    2.1210   -2.7554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0755    1.2982   -1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3186    0.6632   -0.8296 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0449    0.7950   -0.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115    0.1742    0.2254 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2566    0.3288    0.3062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9942    1.0950   -0.5505 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3831    1.2091   -0.4279 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0276    0.5345    0.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2634   -0.2291    1.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352   -0.3108    1.2746 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1294   -0.5917    1.0926 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2009   -0.7908    1.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -1.6556    2.0688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1216   -2.2165    2.9548 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2360   -1.9926    2.9675 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9534   -0.1479    0.1063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6868   -0.3522    0.0321 S   0  0  0  0  0  4  0  0  0  0  0  0
   -4.1258   -1.8528   -0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3794   -0.2364    1.3609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5660    1.5898   -3.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1203    3.1104   -2.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1127    2.3843   -3.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5182    1.4419   -1.4885 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4776    1.6234   -1.3419 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9261    1.8340   -1.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1002    0.6014    0.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7155   -0.7955    2.2561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8828   -1.8116    2.0299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6359   -1.2468    3.5214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2213   -2.4106   -1.1390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7292   -1.6113   -1.7209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6965   -2.5523   -0.1536 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  5 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 13 17  2  0
 17 18  1  0
 18 19  1  1
 18 20  2  0
 17  3  1  0
 11  6  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  4 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
 10 28  1  0
 14 29  1  0
 16 30  1  0
 19 31  1  0
 19 32  1  0
 19 33  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(Z)-N-({5-methanesulphinyl-4-methoxy-[2,2'-bipyridine]-6-yl}methylidene)hydroxylamine	Generator
Pyrisulphoxin a	Generator

Chemical Formula

C₁₃H₁₃N₃O₃S

Average Mass

291.3300 Da

Monoisotopic Mass

291.06776 Da

IUPAC Name

(Z)-N-({5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-yl}methylidene)hydroxylamine

Traditional Name

(Z)-N-({5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-yl}methylidene)hydroxylamine

CAS Registry Number

Not Available

SMILES

COC1=CC(=NC(\C=N/O)=C1S(C)=O)C1=CC=CC=N1

InChI Identifier

InChI=1S/C13H13N3O3S/c1-19-12-7-10(9-5-3-4-6-14-9)16-11(8-15-17)13(12)20(2)18/h3-8,17H,1-2H3/b15-8-

InChI Key

PSADOHLLXYEDFL-NVNXTCNLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces californicus	NPAtlas	10480576

Species Where Detected

Species Name	Source	Reference
Streptomyces californicus BS-75	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.15	ALOGPS
logP	0.93	ChemAxon
logS	-2.1	ALOGPS
pKa (Strongest Acidic)	7.56	ChemAxon
pKa (Strongest Basic)	2.83	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	84.67 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	76.98 m³·mol⁻¹	ChemAxon
Polarizability	29.29 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA018418

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78435098

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

136675100

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Tsuge N, Furihata K, Shin-Ya K, Hayakawa Y, Seto H: Novel antibiotics pyrisulfoxin A and B produced by Streptomyces californicus. J Antibiot (Tokyo). 1999 May;52(5):505-7. doi: 10.7164/antibiotics.52.505. [PubMed:10480576 ]
Choi H, Lee W, Kim E, Ku SK, Bae JS: Inhibitory effects of collismycin C and pyrisulfoxin A on particulate matter-induced pulmonary injury. Phytomedicine. 2019 Sep;62:152939. doi: 10.1016/j.phymed.2019.152939. Epub 2019 Apr 23. [PubMed:31100678 ]
Lee JH, Kim E, Choi H, Lee J: Collismycin C from the Micronesian Marine Bacterium Streptomyces sp. MC025 Inhibits Staphylococcus aureus Biofilm Formation. Mar Drugs. 2017 Dec 12;15(12). pii: md15120387. doi: 10.3390/md15120387. [PubMed:29231844 ]

Showing NP-Card for Pyrisulfoxin A (NP0001775)

MOL for NP0001775 (Pyrisulfoxin A)

3D MOL for NP0001775 (Pyrisulfoxin A)

3D SDF for NP0001775 (Pyrisulfoxin A)

3D-SDF for NP0001775 (Pyrisulfoxin A)

PDB for NP0001775 (Pyrisulfoxin A)

3D PDB for NP0001775 (Pyrisulfoxin A)

SMILES for NP0001775 (Pyrisulfoxin A)

INCHI for NP0001775 (Pyrisulfoxin A)

Structure for NP0001775 (Pyrisulfoxin A)

3D Structure for NP0001775 (Pyrisulfoxin A)