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Record Information
Version2.0
Created at2020-09-29 21:11:17 UTC
Updated at2021-07-15 16:45:10 UTC
NP-MRD IDNP0001727
Secondary Accession NumbersNone
Natural Product Identification
Common NameTetrin C
Provided ByNPAtlasNPAtlas Logo
Description Tetrin C is found in Streptomyces and Streptomyces sp. GK9244. Tetrin C was first documented in 1999 (PMID: 10395521). Based on a literature review very few articles have been published on (1S,3R,5R,7S,8Z,14Z,16Z,18Z,20Z,22S,24R,25S,26R)-22-{[(2R,3S,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-1,3,26-trihydroxy-12,13-dimethyl-10-oxo-6,11,28-trioxatricyclo[22.3.1.0⁵,⁷]Octacosa-8,14,16,18,20-pentaene-25-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(1S,3R,5R,7S,8Z,14Z,16Z,18Z,20Z,22S,24R,25S,26R)-22-{[(2R,3S,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-1,3,26-trihydroxy-12,13-dimethyl-10-oxo-6,11,28-trioxatricyclo[22.3.1.0,]octacosa-8,14,16,18,20-pentaene-25-carboxylateGenerator
Chemical FormulaC34H49NO13
Average Mass679.7600 Da
Monoisotopic Mass679.32039 Da
IUPAC Name(1S,3R,5R,7S,8Z,12R,13S,14Z,16Z,18Z,20Z,22S,24R,25S,26R)-22-{[(2R,3S,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-1,3,26-trihydroxy-12,13-dimethyl-10-oxo-6,11,28-trioxatricyclo[22.3.1.0^{5,7}]octacosa-8,14,16,18,20-pentaene-25-carboxylic acid
Traditional Name(1S,3R,5R,7S,8Z,12R,13S,14Z,16Z,18Z,20Z,22S,24R,25S,26R)-22-{[(2R,3S,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-1,3,26-trihydroxy-12,13-dimethyl-10-oxo-6,11,28-trioxatricyclo[22.3.1.0^{5,7}]octacosa-8,14,16,18,20-pentaene-25-carboxylic acid
CAS Registry NumberNot Available
SMILES
C[C@H]1O[C@@H](O[C@H]2C[C@H]3O[C@](O)(C[C@@H](O)[C@@H]3C(O)=O)C[C@H](O)C[C@H]3O[C@H]3\C=C/C(=O)OC(C)C(C)\C=C/C=C\C=C/C=C\2)[C@@H](O)[C@@H](N)[C@@H]1O
InChI Identifier
InChI=1S/C34H49NO13/c1-18-10-8-6-4-5-7-9-11-22(46-33-31(40)29(35)30(39)20(3)45-33)15-26-28(32(41)42)23(37)17-34(43,48-26)16-21(36)14-25-24(47-25)12-13-27(38)44-19(18)2/h4-13,18-26,28-31,33,36-37,39-40,43H,14-17,35H2,1-3H3,(H,41,42)/b6-4-,7-5-,10-8-,11-9-,13-12-/t18?,19?,20-,21-,22-,23-,24+,25-,26-,28+,29+,30-,31+,33+,34+/m1/s1
InChI KeyDHXPOWBDGCSLDX-ZVAOTRHWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces sp. GK9244Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3.4ALOGPS
logP-1.3ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)3.58ChemAxon
pKa (Strongest Basic)9.11ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area230.99 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity174.35 m³·mol⁻¹ChemAxon
Polarizability68.99 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA014302
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ryu G, Choi WC, Hwang S, Yeo WH, Lee CS, Kim SK: Tetrin C, a new glycosylated polyene macrolide antibiotic produced by Streptomyces sp. GK9244. J Nat Prod. 1999 Jun;62(6):917-9. doi: 10.1021/np9805645. [PubMed:10395521 ]