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Record Information
Version1.0
Created at2020-09-23 02:00:31 UTC
Updated at2021-08-10 02:56:06 UTC
NP-MRD IDNP0001659
Secondary Accession NumbersNone
Natural Product Identification
Common NameGilvusmycin
Provided ByNPAtlasNPAtlas Logo
DescriptionGilvusmycin belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring. Gilvusmycin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Gilvusmycin is found in Streptomyces. It was first documented in 1999 (PMID: 10348041). Based on a literature review very few articles have been published on gilvusmycin (PMID: 29659660).
Structure
Data?1628564166
SynonymsNot Available
Chemical FormulaC38H34N6O8
Average Mass702.7240 Da
Monoisotopic Mass702.24381 Da
IUPAC Name(1R,12S)-10-(6-{6-acetyl-5-hydroxy-4-methoxy-3H,6H,7H,8H-pyrrolo[3,2-e]indole-2-carbonyl}-5-hydroxy-4-methoxy-3H,6H,7H,8H-pyrrolo[3,2-e]indole-2-carbonyl)-3-methyl-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-trien-7-one
Traditional Name(1R,12S)-10-(6-{6-acetyl-5-hydroxy-4-methoxy-3H,7H,8H-pyrrolo[3,2-e]indole-2-carbonyl}-5-hydroxy-4-methoxy-3H,7H,8H-pyrrolo[3,2-e]indole-2-carbonyl)-3-methyl-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-trien-7-one
CAS Registry NumberNot Available
SMILES
[H]OC1=C(OC([H])([H])[H])C2=C(C([H])=C(N2[H])C(=O)N2C3=C([H])C(=O)C4=C(C(=C([H])N4[H])C([H])([H])[H])[C@]33C([H])([H])[C@]3([H])C2([H])[H])C2=C1N(C(=O)C1=C([H])C3=C(N1[H])C(OC([H])([H])[H])=C(O[H])C1=C3C([H])([H])C([H])([H])N1C(=O)C([H])([H])[H])C([H])([H])C2([H])[H]
InChI Identifier
InChI=1S/C38H34N6O8/c1-15-13-39-29-24(46)11-25-38(26(15)29)12-17(38)14-44(25)37(50)23-10-21-19-6-8-43(31(19)33(48)35(52-4)28(21)41-23)36(49)22-9-20-18-5-7-42(16(2)45)30(18)32(47)34(51-3)27(20)40-22/h9-11,13,17,39-41,47-48H,5-8,12,14H2,1-4H3/t17-,38+/m1/s1
InChI KeyXUBJLJZOSKJNMY-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Species Where Detected
Species NameSourceReference
Streptomyces sp. QM16KNApSAcK Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassPyrroloindoles
Direct ParentPyrroloindoles
Alternative Parents
Substituents
  • Indolecarboxamide derivative
  • Indolecarboxylic acid derivative
  • Pyrroloindole
  • Hydroxyindole
  • Indole
  • N-acyl-piperidine
  • 2-heteroaryl carboxamide
  • Anisole
  • N-acylpyrrolidine
  • Pyrrole-2-carboxamide
  • Aryl ketone
  • Pyrrole-2-carboxylic acid or derivatives
  • Alkyl aryl ether
  • Piperidine
  • Benzenoid
  • Substituted pyrrole
  • Heteroaromatic compound
  • Acetamide
  • Vinylogous amide
  • Tertiary carboxylic acid amide
  • Pyrrole
  • Pyrrolidine
  • Ketone
  • Carboxamide group
  • Azacycle
  • Ether
  • Carboxylic acid derivative
  • Organonitrogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organic oxygen compound
  • Carbonyl group
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.72ALOGPS
logP1.2ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)8.05ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area184.29 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity191.08 m³·mol⁻¹ChemAxon
Polarizability76.27 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA001823
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00015352
Chemspider ID7986072
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID65964
Good Scents IDNot Available
References
General References
  1. Tokoro Y, Isoe T, Shindo K: Gilvusmycin, a new antitumor antibiotic related to CC-1065. J Antibiot (Tokyo). 1999 Mar;52(3):263-8. doi: 10.7164/antibiotics.52.263. [PubMed:10348041 ]
  2. Wang X, Wu S, Jin W, Xu B, Tang G, Yuan H: Bioinformatics-guided connection of a biosynthetic gene cluster to the antitumor antibiotic gilvusmycin. Acta Biochim Biophys Sin (Shanghai). 2018 May 1;50(5):516-518. doi: 10.1093/abbs/gmy030. [PubMed:29659660 ]