NP-MRD: Showing NP-Card for Herbarulide (NP0001615)

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Record Information

Version

2.0

Created at

2020-09-23 01:58:43 UTC

Updated at

2021-08-10 02:55:42 UTC

NP-MRD ID

NP0001615

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Herbarulide

Provided By

NPAtlas

Description

(1S,2R,12R,15R,16R)-15-[(2R,3E,5S)-5,6-dimethylhept-3-en-2-yl]-2,16-dimethyl-8-oxatetracyclo[9.7.0.0²,⁷.0¹²,¹⁶]Octadeca-6,10-diene-5,9-dione belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. Herbarulide is found in Pleospora and Pleospora herbarum. Herbarulide was first documented in 1999 (PMID: 10217727). Based on a literature review very few articles have been published on (1S,2R,12R,15R,16R)-15-[(2R,3E,5S)-5,6-dimethylhept-3-en-2-yl]-2,16-dimethyl-8-oxatetracyclo[9.7.0.0²,⁷.0¹²,¹⁶]Octadeca-6,10-diene-5,9-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117433D          

 71 74  0  0  0  0            999 V2000
   -6.0461    1.0224   -1.2915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1547    0.8002    0.1864 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4155    1.9122    0.9067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7336   -0.5536    0.6363 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.8734   -0.7652    2.1354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4038   -0.9981    0.1586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4978   -0.2343   -0.4119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1877   -0.7785   -0.8599 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1042   -0.4612   -2.3583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1032   -0.0522   -0.1271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2609   -0.2524    1.3844 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1139   -0.7612    1.8413 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9683   -0.1010    0.8755 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4016   -0.4137    0.8581 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7065   -1.3049    1.7667 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.4021   -0.0429    0.8512 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5631    0.2267   -0.3096 C   0  0  1  0  0  0  0  0  0  0  0  0
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    3.1270    0.3423   -0.1775 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4590   -0.0201   -1.5015 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.2866   -0.4652   -0.4567 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -6.4817   -1.2752    0.1864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7424   -1.8490    2.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.6922    0.8106   -0.5540 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2672   -1.8503   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5452   -0.6502   -2.3038 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9063   -1.1266   -1.2429 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.9275    0.5962   -2.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5821   -1.0703   -1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8370    1.4170   -1.3543 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6001    0.0534   -2.4941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3378   -2.5593   -0.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1 33  1  0  0  0  0
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  2 35  1  1  0  0  0
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  3 37  1  0  0  0  0
  3 38  1  0  0  0  0
  4 39  1  6  0  0  0
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 13 54  1  1  0  0  0
 15 55  1  0  0  0  0
 20 56  1  0  0  0  0
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 29 67  1  0  0  0  0
 29 68  1  0  0  0  0
 31 69  1  0  0  0  0
 31 70  1  0  0  0  0
 31 71  1  0  0  0  0
M  END

     RDKit          3D

 71 74  0  0  0  0  0  0  0  0999 V2000
   -6.0461    1.0224   -1.2915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1547    0.8002    0.1864 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4155    1.9122    0.9067 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4038   -0.9981    0.1586 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.1011    1.4120   -1.0942 C   0  0  0  0  0  0  0  0  0  0  0  0
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  9 47  1  0
  9 48  1  0
 10 49  1  1
 11 50  1  0
 11 51  1  0
 12 52  1  0
 12 53  1  0
 13 54  1  1
 15 55  1  0
 20 56  1  0
 23 57  1  0
 23 58  1  0
 24 59  1  0
 24 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  1
 28 65  1  0
 28 66  1  0
 29 67  1  0
 29 68  1  0
 31 69  1  0
 31 70  1  0
 31 71  1  0
M  END


  Mrv1652306242117433D          

 71 74  0  0  0  0            999 V2000
   -6.0461    1.0224   -1.2915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1547    0.8002    0.1864 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4155    1.9122    0.9067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7336   -0.5536    0.6363 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.8734   -0.7652    2.1354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4038   -0.9981    0.1586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4978   -0.2343   -0.4119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1877   -0.7785   -0.8599 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1042   -0.4612   -2.3583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1032   -0.0522   -0.1271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2609   -0.2524    1.3844 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1139   -0.7612    1.8413 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9683   -0.1010    0.8755 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4016   -0.4137    0.8581 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7065   -1.3049    1.7667 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0830   -1.8106    1.9785 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1225   -2.9618    2.5407 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2903   -1.2033    1.6507 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4021   -0.0429    0.8512 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3601    0.7562    1.2901 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6458    2.0095    0.6151 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7076    2.6267    0.6390 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4955    2.5606   -0.1750 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1011    1.4120   -1.0942 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5631    0.2267   -0.3096 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8212   -0.9716   -1.2740 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1270    0.3423   -0.1775 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4590   -0.0201   -1.5015 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9864    0.3380   -1.4939 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2866   -0.4652   -0.4567 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4339   -1.9382   -0.7374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5834    0.1317   -1.7903 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1215   -0.5772   -2.7981 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.2064    1.0307   -0.3784 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4517    0.7436    1.8443 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0244   -1.8605    1.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2742   -0.4041    2.8699 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8443    0.9997    0.9607 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9564   -1.7145    2.4088 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9498    0.4914    2.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6527    2.7593    0.5293 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7687    3.4203   -0.7829 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2672   -1.8503   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9063   -1.1266   -1.2429 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5821   -1.0703   -1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3378   -2.5593   -0.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.4090   -2.2836   -0.3392 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
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 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
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 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
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 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
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 29 30  1  0  0  0  0
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 30 10  1  0  0  0  0
 30 13  1  0  0  0  0
 27 14  1  0  0  0  0
 25 19  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  1 34  1  0  0  0  0
  2 35  1  1  0  0  0
  3 36  1  0  0  0  0
  3 37  1  0  0  0  0
  3 38  1  0  0  0  0
  4 39  1  6  0  0  0
  5 40  1  0  0  0  0
  5 41  1  0  0  0  0
  5 42  1  0  0  0  0
  6 43  1  0  0  0  0
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  8 45  1  6  0  0  0
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  9 47  1  0  0  0  0
  9 48  1  0  0  0  0
 10 49  1  1  0  0  0
 11 50  1  0  0  0  0
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 23 57  1  0  0  0  0
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 29 67  1  0  0  0  0
 29 68  1  0  0  0  0
 31 69  1  0  0  0  0
 31 70  1  0  0  0  0
 31 71  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0001615

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]\C(=C(\[H])[C@@]([H])(C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2([H])C3=C([H])C(=O)OC4=C([H])C(=O)C([H])([H])C([H])([H])[C@]4(C([H])([H])[H])[C@@]3([H])C([H])([H])C([H])([H])[C@]12C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C28H40O3/c1-17(2)18(3)7-8-19(4)22-9-10-23-21-16-26(30)31-25-15-20(29)11-13-28(25,6)24(21)12-14-27(22,23)5/h7-8,15-19,22-24H,9-14H2,1-6H3/b8-7+/t18-,19-,22-,23+,24+,27-,28-/m1/s1

> <INCHI_KEY>
ZBDCBYOOVMXUHB-WVOOIZFRSA-N

> <FORMULA>
C28H40O3

> <MOLECULAR_WEIGHT>
424.625

> <EXACT_MASS>
424.297745148

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
50.70109561019159

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,12R,15R,16R)-15-[(2R,3E,5S)-5,6-dimethylhept-3-en-2-yl]-2,16-dimethyl-8-oxatetracyclo[9.7.0.0^{2,7}.0^{12,16}]octadeca-6,10-diene-5,9-dione

> <ALOGPS_LOGP>
5.89

> <JCHEM_LOGP>
6.6007480590000025

> <ALOGPS_LOGS>
-6.30

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.575409444625834

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.842137712937852

> <JCHEM_PKA_STRONGEST_BASIC>
-6.230154820600358

> <JCHEM_POLAR_SURFACE_AREA>
43.370000000000005

> <JCHEM_REFRACTIVITY>
128.24369999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.11e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,12R,15R,16R)-15-[(2R,3E,5S)-5,6-dimethylhept-3-en-2-yl]-2,16-dimethyl-8-oxatetracyclo[9.7.0.0^{2,7}.0^{12,16}]octadeca-6,10-diene-5,9-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 71 74  0  0  0  0  0  0  0  0999 V2000
   -6.0461    1.0224   -1.2915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1547    0.8002    0.1864 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -5.7336   -0.5536    0.6363 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.8734   -0.7652    2.1354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4038   -0.9981    0.1586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4978   -0.2343   -0.4119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1877   -0.7785   -0.8599 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1042   -0.4612   -2.3583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1032   -0.0522   -0.1271 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.9683   -0.1010    0.8755 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.2742   -0.4041    2.8699 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9564   -1.7145    2.4088 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6527    2.7593    0.5293 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7687    3.4203   -0.7829 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0783    1.1059   -1.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4032    1.8282   -1.8178 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2672   -1.8503   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5452   -0.6502   -2.3038 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9063   -1.1266   -1.2429 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8662    1.4333   -0.0266 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9275    0.5962   -2.2848 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5821   -1.0703   -1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8370    1.4170   -1.3543 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6001    0.0534   -2.4941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3378   -2.5593   -0.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4647   -2.0819   -1.8165 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4090   -2.2836   -0.3392 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  6
 25 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  6
 30 10  1  0
 30 13  1  0
 27 14  1  0
 25 19  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  1
  3 36  1  0
  3 37  1  0
  3 38  1  0
  4 39  1  6
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  5 41  1  0
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  6 43  1  0
  7 44  1  0
  8 45  1  6
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 13 54  1  1
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 27 64  1  1
 28 65  1  0
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 29 67  1  0
 29 68  1  0
 31 69  1  0
 31 70  1  0
 31 71  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -6.046   1.022  -1.292  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.155   0.800   0.186  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.415   1.912   0.907  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.734  -0.554   0.636  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.873  -0.765   2.135  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.404  -0.998   0.159  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.498  -0.234  -0.412  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.188  -0.779  -0.860  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.104  -0.461  -2.358  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.103  -0.052  -0.127  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.261  -0.252   1.384  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.114  -0.761   1.841  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.968  -0.101   0.876  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.402  -0.414   0.858  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.707  -1.305   1.767  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.083  -1.811   1.978  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.122  -2.962   2.541  0.00  0.00           O+0
HETATM   18  O   UNK     0       5.290  -1.203   1.651  0.00  0.00           O+0
HETATM   19  C   UNK     0       5.402  -0.043   0.851  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.360   0.756   1.290  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.646   2.010   0.615  0.00  0.00           C+0
HETATM   22  O   UNK     0       7.708   2.627   0.639  0.00  0.00           O+0
HETATM   23  C   UNK     0       5.495   2.561  -0.175  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.101   1.412  -1.094  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.563   0.227  -0.310  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.821  -0.972  -1.274  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.127   0.342  -0.178  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.459  -0.020  -1.502  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.986   0.338  -1.494  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.287  -0.465  -0.457  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.434  -1.938  -0.737  0.00  0.00           C+0
HETATM   32  H   UNK     0      -5.583   0.132  -1.790  0.00  0.00           H+0
HETATM   33  H   UNK     0      -5.521   1.959  -1.507  0.00  0.00           H+0
HETATM   34  H   UNK     0      -7.072   1.165  -1.752  0.00  0.00           H+0
HETATM   35  H   UNK     0      -7.241   0.953   0.463  0.00  0.00           H+0
HETATM   36  H   UNK     0      -5.035   2.656   0.177  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.590   1.512   1.553  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.067   2.479   1.605  0.00  0.00           H+0
HETATM   39  H   UNK     0      -6.482  -1.275   0.186  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.742  -1.849   2.317  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.078  -0.237   2.700  0.00  0.00           H+0
HETATM   42  H   UNK     0      -6.890  -0.472   2.414  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.104  -2.059   0.270  0.00  0.00           H+0
HETATM   44  H   UNK     0      -3.692   0.811  -0.554  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.196  -1.861  -0.733  0.00  0.00           H+0
HETATM   46  H   UNK     0      -3.122  -0.577  -2.798  0.00  0.00           H+0
HETATM   47  H   UNK     0      -1.444  -1.133  -2.904  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.739   0.573  -2.466  0.00  0.00           H+0
HETATM   49  H   UNK     0      -1.206   1.031  -0.378  0.00  0.00           H+0
HETATM   50  H   UNK     0      -2.058  -0.969   1.622  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.452   0.744   1.844  0.00  0.00           H+0
HETATM   52  H   UNK     0       0.024  -1.861   1.780  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.274  -0.404   2.870  0.00  0.00           H+0
HETATM   54  H   UNK     0       0.844   1.000   0.961  0.00  0.00           H+0
HETATM   55  H   UNK     0       1.956  -1.714   2.409  0.00  0.00           H+0
HETATM   56  H   UNK     0       6.950   0.491   2.157  0.00  0.00           H+0
HETATM   57  H   UNK     0       4.653   2.759   0.529  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.769   3.420  -0.783  0.00  0.00           H+0
HETATM   59  H   UNK     0       6.078   1.106  -1.579  0.00  0.00           H+0
HETATM   60  H   UNK     0       4.403   1.828  -1.818  0.00  0.00           H+0
HETATM   61  H   UNK     0       4.267  -1.850  -0.922  0.00  0.00           H+0
HETATM   62  H   UNK     0       4.545  -0.650  -2.304  0.00  0.00           H+0
HETATM   63  H   UNK     0       5.906  -1.127  -1.243  0.00  0.00           H+0
HETATM   64  H   UNK     0       2.866   1.433  -0.027  0.00  0.00           H+0
HETATM   65  H   UNK     0       2.928   0.596  -2.285  0.00  0.00           H+0
HETATM   66  H   UNK     0       2.582  -1.070  -1.767  0.00  0.00           H+0
HETATM   67  H   UNK     0       0.837   1.417  -1.354  0.00  0.00           H+0
HETATM   68  H   UNK     0       0.600   0.053  -2.494  0.00  0.00           H+0
HETATM   69  H   UNK     0      -0.338  -2.559  -0.291  0.00  0.00           H+0
HETATM   70  H   UNK     0       0.465  -2.082  -1.817  0.00  0.00           H+0
HETATM   71  H   UNK     0       1.409  -2.284  -0.339  0.00  0.00           H+0
CONECT    1    2   32   33   34                                             
CONECT    2    1    3    4   35                                             
CONECT    3    2   36   37   38                                             
CONECT    4    2    5    6   39                                             
CONECT    5    4   40   41   42                                             
CONECT    6    4    7   43                                                  
CONECT    7    6    8   44                                                  
CONECT    8    7    9   10   45                                             
CONECT    9    8   46   47   48                                             
CONECT   10    8   11   30   49                                             
CONECT   11   10   12   50   51                                             
CONECT   12   11   13   52   53                                             
CONECT   13   12   14   30   54                                             
CONECT   14   13   15   27                                                  
CONECT   15   14   16   55                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   25                                                  
CONECT   20   19   21   56                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   57   58                                             
CONECT   24   23   25   59   60                                             
CONECT   25   24   26   27   19                                             
CONECT   26   25   61   62   63                                             
CONECT   27   25   28   14   64                                             
CONECT   28   27   29   65   66                                             
CONECT   29   28   30   67   68                                             
CONECT   30   29   31   10   13                                             
CONECT   31   30   69   70   71                                             
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    1                                                            
CONECT   35    2                                                            
CONECT   36    3                                                            
CONECT   37    3                                                            
CONECT   38    3                                                            
CONECT   39    4                                                            
CONECT   40    5                                                            
CONECT   41    5                                                            
CONECT   42    5                                                            
CONECT   43    6                                                            
CONECT   44    7                                                            
CONECT   45    8                                                            
CONECT   46    9                                                            
CONECT   47    9                                                            
CONECT   48    9                                                            
CONECT   49   10                                                            
CONECT   50   11                                                            
CONECT   51   11                                                            
CONECT   52   12                                                            
CONECT   53   12                                                            
CONECT   54   13                                                            
CONECT   55   15                                                            
CONECT   56   20                                                            
CONECT   57   23                                                            
CONECT   58   23                                                            
CONECT   59   24                                                            
CONECT   60   24                                                            
CONECT   61   26                                                            
CONECT   62   26                                                            
CONECT   63   26                                                            
CONECT   64   27                                                            
CONECT   65   28                                                            
CONECT   66   28                                                            
CONECT   67   29                                                            
CONECT   68   29                                                            
CONECT   69   31                                                            
CONECT   70   31                                                            
CONECT   71   31                                                            
MASTER        0    0    0    0    0    0    0    0   71    0  148    0
END

RDKit          3D

71 74  0  0  0  0  0  0  0  0999 V2000
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   -2.1042   -0.4612   -2.3583 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.1139   -0.7612    1.8413 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4016   -0.4137    0.8581 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7065   -1.3049    1.7667 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.6001    0.0534   -2.4941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3378   -2.5593   -0.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4647   -2.0819   -1.8165 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4090   -2.2836   -0.3392 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  6
 25 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  6
 30 10  1  0
 30 13  1  0
 27 14  1  0
 25 19  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  1
  3 36  1  0
  3 37  1  0
  3 38  1  0
  4 39  1  6
  5 40  1  0
  5 41  1  0
  5 42  1  0
  6 43  1  0
  7 44  1  0
  8 45  1  6
  9 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  1
 11 50  1  0
 11 51  1  0
 12 52  1  0
 12 53  1  0
 13 54  1  1
 15 55  1  0
 20 56  1  0
 23 57  1  0
 23 58  1  0
 24 59  1  0
 24 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  1
 28 65  1  0
 28 66  1  0
 29 67  1  0
 29 68  1  0
 31 69  1  0
 31 70  1  0
 31 71  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₈H₄₀O₃

Average Mass

424.6250 Da

Monoisotopic Mass

424.29775 Da

IUPAC Name

(1S,2R,12R,15R,16R)-15-[(2R,3E,5S)-5,6-dimethylhept-3-en-2-yl]-2,16-dimethyl-8-oxatetracyclo[9.7.0.0^{2,7}.0^{12,16}]octadeca-6,10-diene-5,9-dione

Traditional Name

(1S,2R,12R,15R,16R)-15-[(2R,3E,5S)-5,6-dimethylhept-3-en-2-yl]-2,16-dimethyl-8-oxatetracyclo[9.7.0.0^{2,7}.0^{12,16}]octadeca-6,10-diene-5,9-dione

CAS Registry Number

Not Available

SMILES

[H]\C(=C(\[H])[C@@]([H])(C([H])([H])[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]2([H])C3=C([H])C(=O)OC4=C([H])C(=O)C([H])([H])C([H])([H])[C@]4(C([H])([H])[H])[C@@]3([H])C([H])([H])C([H])([H])[C@]12C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C28H40O3/c1-17(2)18(3)7-8-19(4)22-9-10-23-21-16-26(30)31-25-15-20(29)11-13-28(25,6)24(21)12-14-27(22,23)5/h7-8,15-19,22-24H,9-14H2,1-6H3/b8-7+/t18-,19-,22-,23+,24+,27-,28-/m1/s1

InChI Key

ZBDCBYOOVMXUHB-WVOOIZFRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pleospora	NPAtlas	10217727
Pleospora herbarum	Fungi	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Sesquiterpenoid
Cyclohexenone
Enol ester
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Carboxylic acid ester
Ketone
Lactone
Cyclic ketone
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Organic oxide
Organooxygen compound
Carbonyl group
Organic oxygen compound
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.89	ALOGPS
logP	6.6	ChemAxon
logS	-6.3	ALOGPS
pKa (Strongest Acidic)	18.84	ChemAxon
pKa (Strongest Basic)	-6.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	43.37 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	128.24 m³·mol⁻¹	ChemAxon
Polarizability	50.7 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007349

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10193991

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21581027

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Krohn K, Biele C, Aust HJ, Draeger S, Schulz B: Herbarulide, a ketodivinyllactone steroid with an unprecedented homo-6-oxaergostane skeleton from the endophytic fungus pleospora herbarum1 J Nat Prod. 1999 Apr;62(4):629-30. doi: 10.1021/np980422a. [PubMed:10217727 ]

Showing NP-Card for Herbarulide (NP0001615)

MOL for NP0001615 (Herbarulide)

3D MOL for NP0001615 (Herbarulide)

3D SDF for NP0001615 (Herbarulide)

3D-SDF for NP0001615 (Herbarulide)

PDB for NP0001615 (Herbarulide)

3D PDB for NP0001615 (Herbarulide)

SMILES for NP0001615 (Herbarulide)

INCHI for NP0001615 (Herbarulide)

Structure for NP0001615 (Herbarulide)

3D Structure for NP0001615 (Herbarulide)