NP-MRD: Showing NP-Card for Thymidine 5'-triphosphate (NP0001235)

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Record Information

Version

1.0

Created at

2005-11-16 15:48:42 UTC

Updated at

2021-06-29 00:47:01 UTC

NP-MRD ID

NP0001235

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Thymidine 5'-triphosphate

Description

Deoxythymidine triphosphate (dTTP) is one of the four nucleoside triphosphates that are used in the in vivo synthesis of DNA. Unlike the other deoxyribonucleoside triphosphates, thymidine triphosphate does not always contain the "deoxy" prefix in its name. The corresponding ribonucleoside triphosphate is called uridine triphosphate. Thymidine 5'-triphosphate, also known as TTP or DTHD5'ppp, belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleoside triphosphates. These are pyrimidine nucleotides with a triphosphate group linked to the ribose moiety lacking a hydroxyl group at position 2. Thymidine 5'-triphosphate exists in all living species, ranging from bacteria to humans. Outside of the human body, Thymidine 5'-triphosphate has been detected, but not quantified in several different foods, such as elliott's blueberries, mamey sapotes, sesames, alliums, and sweet oranges.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652306222023532D          

 32 33  0  0  1  0            999 V2000
   -0.6110   -1.8216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6548    1.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7604   -0.4005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7743    2.0602    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2754   -1.0679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222    2.2902    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9897    1.8053    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9097    1.0206    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5450   -0.9817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3957    0.4394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8806   -0.2280    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4248    0.3532    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222    3.1152    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0300   -1.6491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7312    1.1931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4274    5.5009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3878    6.0306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8977    4.4613    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4755    3.9067    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9854    2.3375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8796    4.3555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4936    4.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9458    2.8672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7347    1.0206    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8581    4.9910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5151    3.3770    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6427    5.2459    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7304    3.1221    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6866    4.1840    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0573    2.6647    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5730    1.2219    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2843    0.2856    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  5  3  2  0  0  0  0
  6  2  1  0  0  0  0
  7  4  1  6  0  0  0
  7  6  1  0  0  0  0
  8  2  1  0  0  0  0
  9  5  1  0  0  0  0
 11  9  2  0  0  0  0
 11 10  1  0  0  0  0
 12  3  1  0  0  0  0
  8 12  1  6  0  0  0
 12 10  1  0  0  0  0
  6 13  1  1  0  0  0
 14  9  1  0  0  0  0
 15 10  2  0  0  0  0
 23  4  1  0  0  0  0
 24  7  1  0  0  0  0
 24  8  1  0  0  0  0
 27 16  1  0  0  0  0
 27 17  1  0  0  0  0
 27 18  2  0  0  0  0
 27 25  1  0  0  0  0
 28 19  1  0  0  0  0
 28 20  2  0  0  0  0
 28 23  1  0  0  0  0
 28 26  1  0  0  0  0
 29 21  1  0  0  0  0
 29 22  2  0  0  0  0
 29 25  1  0  0  0  0
 29 26  1  0  0  0  0
  6 30  1  6  0  0  0
  7 31  1  1  0  0  0
  8 32  1  1  0  0  0
M  END

HMDB0001342
     RDKit          3D
Thymidine 5'-triphosphate
 46 47  0  0  0  0  0  0  0  0999 V2000
   -7.1863   -0.8777    0.0785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0194    0.0261   -0.1005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7362   -0.3064    0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6836    0.5157    0.0902 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3940    0.0386    0.5065 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9671   -1.1636   -0.3497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5210   -1.2662    0.1575 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5997   -2.0085    1.3450 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2106    0.1745    0.4427 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8655    0.5979   -0.5645 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0054   -0.1502   -0.3737 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1453    0.3828   -1.5296 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.4521    1.8372   -1.3184 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014    0.2144   -3.0458 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5402   -0.5611   -1.4934 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1521   -0.7137    0.0665 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.5002   -1.9082    0.7256 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8038    0.6551    0.9951 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8165   -0.9982   -0.0322 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6981    0.2158    0.7467 P   0  0  0  0  0  5  0  0  0  0  0  0
    7.4489    1.5752    0.1456 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3382   -0.1504    0.5594 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3614    0.2525    2.4057 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3622    0.9036    0.2779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9152    1.7206   -0.4502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9261    2.4800   -0.5992 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1711    2.0839   -0.8135 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2281    1.2656   -0.6515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3715    1.6283   -0.9955 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8589   -0.5419    0.8931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7238   -0.9749   -0.8963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7686   -1.8932    0.2855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -1.2998    0.6925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4427   -0.3192    1.5502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9944   -0.8889   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5535   -2.0437   -0.0866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1414   -1.7250   -0.5854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1985   -2.7927    1.1662 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2318    0.3143    1.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0456    1.6882   -0.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4374    0.3366   -1.5696 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8923   -0.6565   -3.0671 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1411    1.4829    0.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8620   -0.0317    1.3703 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4738   -0.1488    2.6026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3313    3.0307   -1.2345 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 12 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 16 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 20 23  1  0
  9 24  1  0
  4 25  1  0
 25 26  2  0
 25 27  1  0
 27 28  1  0
 28 29  2  0
 28  2  1  0
 24  5  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  5 34  1  1
  6 35  1  0
  6 36  1  0
  7 37  1  6
  8 38  1  0
  9 39  1  1
 10 40  1  0
 10 41  1  0
 14 42  1  0
 18 43  1  0
 22 44  1  0
 23 45  1  0
 27 46  1  0
M  END


  Mrv1652306222023532D          

 32 33  0  0  1  0            999 V2000
   -0.6110   -1.8216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6548    1.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7604   -0.4005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7743    2.0602    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2754   -1.0679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222    2.2902    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9897    1.8053    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9097    1.0206    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5450   -0.9817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3957    0.4394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8806   -0.2280    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4248    0.3532    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222    3.1152    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0300   -1.6491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7312    1.1931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4274    5.5009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3878    6.0306    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8977    4.4613    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4755    3.9067    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9854    2.3375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8796    4.3555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4936    4.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9458    2.8672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7347    1.0206    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8581    4.9910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5151    3.3770    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6427    5.2459    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7304    3.1221    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6866    4.1840    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0573    2.6647    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5730    1.2219    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2843    0.2856    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  5  3  2  0  0  0  0
  6  2  1  0  0  0  0
  7  4  1  6  0  0  0
  7  6  1  0  0  0  0
  8  2  1  0  0  0  0
  9  5  1  0  0  0  0
 11  9  2  0  0  0  0
 11 10  1  0  0  0  0
 12  3  1  0  0  0  0
  8 12  1  6  0  0  0
 12 10  1  0  0  0  0
  6 13  1  1  0  0  0
 14  9  1  0  0  0  0
 15 10  2  0  0  0  0
 23  4  1  0  0  0  0
 24  7  1  0  0  0  0
 24  8  1  0  0  0  0
 27 16  1  0  0  0  0
 27 17  1  0  0  0  0
 27 18  2  0  0  0  0
 27 25  1  0  0  0  0
 28 19  1  0  0  0  0
 28 20  2  0  0  0  0
 28 23  1  0  0  0  0
 28 26  1  0  0  0  0
 29 21  1  0  0  0  0
 29 22  2  0  0  0  0
 29 25  1  0  0  0  0
 29 26  1  0  0  0  0
  6 30  1  6  0  0  0
  7 31  1  1  0  0  0
  8 32  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0001235

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]1(O)C[C@@]([H])(O[C@]1([H])COP(O)(=O)OP(O)(=O)OP(O)(O)=O)N1C=C(C)C(O)=NC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H17N2O14P3/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(24-8)4-23-28(19,20)26-29(21,22)25-27(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,19,20)(H,21,22)(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1

> <INCHI_KEY>
NHVNXKFIZYSCEB-XLPZGREQSA-N

> <FORMULA>
C10H17N2O14P3

> <MOLECULAR_WEIGHT>
482.1683

> <EXACT_MASS>
481.989262798

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
36.59837789743729

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[hydroxy({[hydroxy({[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy})phosphoryl]oxy})phosphoryl]oxy}phosphonic acid

> <ALOGPS_LOGP>
-0.39

> <JCHEM_LOGP>
-2.086216578666666

> <ALOGPS_LOGS>
-1.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
2.5314813591657925

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8952835615680885

> <JCHEM_PKA_STRONGEST_BASIC>
-3.24034425909658

> <JCHEM_POLAR_SURFACE_AREA>
238.68999999999994

> <JCHEM_REFRACTIVITY>
88.03069999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.52e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
dTTP

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0001342
     RDKit          3D
Thymidine 5'-triphosphate
 46 47  0  0  0  0  0  0  0  0999 V2000
   -7.1863   -0.8777    0.0785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0194    0.0261   -0.1005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7362   -0.3064    0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6836    0.5157    0.0902 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3940    0.0386    0.5065 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9671   -1.1636   -0.3497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5210   -1.2662    0.1575 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5997   -2.0085    1.3450 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2106    0.1745    0.4427 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8655    0.5979   -0.5645 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0054   -0.1502   -0.3737 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1453    0.3828   -1.5296 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.4521    1.8372   -1.3184 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014    0.2144   -3.0458 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5402   -0.5611   -1.4934 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1521   -0.7137    0.0665 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.5002   -1.9082    0.7256 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8038    0.6551    0.9951 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8165   -0.9982   -0.0322 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6981    0.2158    0.7467 P   0  0  0  0  0  5  0  0  0  0  0  0
    7.4489    1.5752    0.1456 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3382   -0.1504    0.5594 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3614    0.2525    2.4057 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3622    0.9036    0.2779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9152    1.7206   -0.4502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9261    2.4800   -0.5992 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1711    2.0839   -0.8135 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2281    1.2656   -0.6515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3715    1.6283   -0.9955 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8589   -0.5419    0.8931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7238   -0.9749   -0.8963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7686   -1.8932    0.2855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -1.2998    0.6925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4427   -0.3192    1.5502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9944   -0.8889   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5535   -2.0437   -0.0866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1414   -1.7250   -0.5854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1985   -2.7927    1.1662 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2318    0.3143    1.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0456    1.6882   -0.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4374    0.3366   -1.5696 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8923   -0.6565   -3.0671 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1411    1.4829    0.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8620   -0.0317    1.3703 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4738   -0.1488    2.6026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3313    3.0307   -1.2345 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 12 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 16 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 20 23  1  0
  9 24  1  0
  4 25  1  0
 25 26  2  0
 25 27  1  0
 27 28  1  0
 28 29  2  0
 28  2  1  0
 24  5  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  5 34  1  1
  6 35  1  0
  6 36  1  0
  7 37  1  6
  8 38  1  0
  9 39  1  1
 10 40  1  0
 10 41  1  0
 14 42  1  0
 18 43  1  0
 22 44  1  0
 23 45  1  0
 27 46  1  0
M  END

HEADER    PROTEIN                                 22-JUN-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-JUN-20         0                                  
HETATM    1  C   UNK     0      -1.141  -3.400   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.222   3.370   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.419  -0.748   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.179   3.846   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.514  -1.993   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.468   4.275   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.714   3.370   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.698   1.905   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.017  -1.833   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.739   0.820   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       1.644  -0.426   0.000  0.00  0.00           N+0
HETATM   12  N   UNK     0      -0.793   0.659   0.000  0.00  0.00           N+0
HETATM   13  O   UNK     0      -2.468   5.815   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       1.923  -3.078   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       1.365   2.227   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0     -11.998  10.268   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0     -10.057  11.257   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0     -11.009   8.328   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      -6.488   7.293   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      -7.439   4.363   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -7.242   8.130   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0     -10.255   7.490   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -5.499   5.352   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      -3.238   1.905   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      -9.068   9.317   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      -8.428   6.304   0.000  0.00  0.00           O+0
HETATM   27  P   UNK     0     -10.533   9.792   0.000  0.00  0.00           P+0
HETATM   28  P   UNK     0      -6.963   5.828   0.000  0.00  0.00           P+0
HETATM   29  P   UNK     0      -8.748   7.810   0.000  0.00  0.00           P+0
HETATM   30  H   UNK     0      -3.840   4.974   0.000  0.00  0.00           H+0
HETATM   31  H   UNK     0      -4.803   2.281   0.000  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.397   0.533   0.000  0.00  0.00           H+0
CONECT    1    5                                                            
CONECT    2    6    8                                                       
CONECT    3    5   12                                                       
CONECT    4    7   23                                                       
CONECT    5    1    3    9                                                  
CONECT    6    2    7   13   30                                             
CONECT    7    4    6   24   31                                             
CONECT    8    2   12   24   32                                             
CONECT    9    5   11   14                                                  
CONECT   10   11   12   15                                                  
CONECT   11    9   10                                                       
CONECT   12    3    8   10                                                  
CONECT   13    6                                                            
CONECT   14    9                                                            
CONECT   15   10                                                            
CONECT   16   27                                                            
CONECT   17   27                                                            
CONECT   18   27                                                            
CONECT   19   28                                                            
CONECT   20   28                                                            
CONECT   21   29                                                            
CONECT   22   29                                                            
CONECT   23    4   28                                                       
CONECT   24    7    8                                                       
CONECT   25   27   29                                                       
CONECT   26   28   29                                                       
CONECT   27   16   17   18   25                                             
CONECT   28   19   20   23   26                                             
CONECT   29   21   22   25   26                                             
CONECT   30    6                                                            
CONECT   31    7                                                            
CONECT   32    8                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   66    0
END

COMPND    HMDB0001342
HETATM    1  C1  UNL     1      -7.186  -0.878   0.078  1.00  0.00           C  
HETATM    2  C2  UNL     1      -6.019   0.026  -0.101  1.00  0.00           C  
HETATM    3  C3  UNL     1      -4.736  -0.306   0.255  1.00  0.00           C  
HETATM    4  N1  UNL     1      -3.684   0.516   0.090  1.00  0.00           N  
HETATM    5  C4  UNL     1      -2.394   0.039   0.507  1.00  0.00           C  
HETATM    6  C5  UNL     1      -1.967  -1.164  -0.350  1.00  0.00           C  
HETATM    7  C6  UNL     1      -0.521  -1.266   0.157  1.00  0.00           C  
HETATM    8  O1  UNL     1      -0.600  -2.009   1.345  1.00  0.00           O  
HETATM    9  C7  UNL     1      -0.211   0.174   0.443  1.00  0.00           C  
HETATM   10  C8  UNL     1       0.865   0.598  -0.565  1.00  0.00           C  
HETATM   11  O2  UNL     1       2.005  -0.150  -0.374  1.00  0.00           O  
HETATM   12  P1  UNL     1       3.145   0.383  -1.530  1.00  0.00           P  
HETATM   13  O3  UNL     1       3.452   1.837  -1.318  1.00  0.00           O  
HETATM   14  O4  UNL     1       2.401   0.214  -3.046  1.00  0.00           O  
HETATM   15  O5  UNL     1       4.540  -0.561  -1.493  1.00  0.00           O  
HETATM   16  P2  UNL     1       5.152  -0.714   0.067  1.00  0.00           P  
HETATM   17  O6  UNL     1       4.500  -1.908   0.726  1.00  0.00           O  
HETATM   18  O7  UNL     1       4.804   0.655   0.995  1.00  0.00           O  
HETATM   19  O8  UNL     1       6.817  -0.998  -0.032  1.00  0.00           O  
HETATM   20  P3  UNL     1       7.698   0.216   0.747  1.00  0.00           P  
HETATM   21  O9  UNL     1       7.449   1.575   0.146  1.00  0.00           O  
HETATM   22  O10 UNL     1       9.338  -0.150   0.559  1.00  0.00           O  
HETATM   23  O11 UNL     1       7.361   0.252   2.406  1.00  0.00           O  
HETATM   24  O12 UNL     1      -1.362   0.904   0.278  1.00  0.00           O  
HETATM   25  C9  UNL     1      -3.915   1.721  -0.450  1.00  0.00           C  
HETATM   26  O13 UNL     1      -2.926   2.480  -0.599  1.00  0.00           O  
HETATM   27  N2  UNL     1      -5.171   2.084  -0.814  1.00  0.00           N  
HETATM   28  C10 UNL     1      -6.228   1.266  -0.652  1.00  0.00           C  
HETATM   29  O14 UNL     1      -7.371   1.628  -0.995  1.00  0.00           O  
HETATM   30  H1  UNL     1      -7.859  -0.542   0.893  1.00  0.00           H  
HETATM   31  H2  UNL     1      -7.724  -0.975  -0.896  1.00  0.00           H  
HETATM   32  H3  UNL     1      -6.769  -1.893   0.286  1.00  0.00           H  
HETATM   33  H4  UNL     1      -4.591  -1.300   0.692  1.00  0.00           H  
HETATM   34  H5  UNL     1      -2.443  -0.319   1.550  1.00  0.00           H  
HETATM   35  H6  UNL     1      -1.994  -0.889  -1.418  1.00  0.00           H  
HETATM   36  H7  UNL     1      -2.554  -2.044  -0.087  1.00  0.00           H  
HETATM   37  H8  UNL     1       0.141  -1.725  -0.585  1.00  0.00           H  
HETATM   38  H9  UNL     1      -1.199  -2.793   1.166  1.00  0.00           H  
HETATM   39  H10 UNL     1       0.232   0.314   1.461  1.00  0.00           H  
HETATM   40  H11 UNL     1       1.046   1.688  -0.509  1.00  0.00           H  
HETATM   41  H12 UNL     1       0.437   0.337  -1.570  1.00  0.00           H  
HETATM   42  H13 UNL     1       1.892  -0.656  -3.067  1.00  0.00           H  
HETATM   43  H14 UNL     1       5.141   1.483   0.602  1.00  0.00           H  
HETATM   44  H15 UNL     1       9.862  -0.032   1.370  1.00  0.00           H  
HETATM   45  H16 UNL     1       6.474  -0.149   2.603  1.00  0.00           H  
HETATM   46  H17 UNL     1      -5.331   3.031  -1.235  1.00  0.00           H  
CONECT    1    2   30   31   32
CONECT    2    3    3   28
CONECT    3    4   33
CONECT    4    5   25
CONECT    5    6   24   34
CONECT    6    7   35   36
CONECT    7    8    9   37
CONECT    8   38
CONECT    9   10   24   39
CONECT   10   11   40   41
CONECT   11   12
CONECT   12   13   13   14   15
CONECT   14   42
CONECT   15   16
CONECT   16   17   17   18   19
CONECT   18   43
CONECT   19   20
CONECT   20   21   21   22   23
CONECT   22   44
CONECT   23   45
CONECT   25   26   26   27
CONECT   27   28   46
CONECT   28   29   29
END

HMDB0001342
     RDKit          3D
Thymidine 5'-triphosphate
 46 47  0  0  0  0  0  0  0  0999 V2000
   -7.1863   -0.8777    0.0785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0194    0.0261   -0.1005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7362   -0.3064    0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6836    0.5157    0.0902 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3940    0.0386    0.5065 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9671   -1.1636   -0.3497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5210   -1.2662    0.1575 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5997   -2.0085    1.3450 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2106    0.1745    0.4427 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8655    0.5979   -0.5645 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0054   -0.1502   -0.3737 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1453    0.3828   -1.5296 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.4521    1.8372   -1.3184 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014    0.2144   -3.0458 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5402   -0.5611   -1.4934 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1521   -0.7137    0.0665 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.5002   -1.9082    0.7256 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8038    0.6551    0.9951 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8165   -0.9982   -0.0322 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6981    0.2158    0.7467 P   0  0  0  0  0  5  0  0  0  0  0  0
    7.4489    1.5752    0.1456 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3382   -0.1504    0.5594 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3614    0.2525    2.4057 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3622    0.9036    0.2779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9152    1.7206   -0.4502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9261    2.4800   -0.5992 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1711    2.0839   -0.8135 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2281    1.2656   -0.6515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3715    1.6283   -0.9955 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8589   -0.5419    0.8931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7238   -0.9749   -0.8963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7686   -1.8932    0.2855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -1.2998    0.6925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4427   -0.3192    1.5502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9944   -0.8889   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5535   -2.0437   -0.0866 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1414   -1.7250   -0.5854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1985   -2.7927    1.1662 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2318    0.3143    1.4613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0456    1.6882   -0.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4374    0.3366   -1.5696 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8923   -0.6565   -3.0671 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1411    1.4829    0.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8620   -0.0317    1.3703 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4738   -0.1488    2.6026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3313    3.0307   -1.2345 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 12 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 16 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 20 23  1  0
  9 24  1  0
  4 25  1  0
 25 26  2  0
 25 27  1  0
 27 28  1  0
 28 29  2  0
 28  2  1  0
 24  5  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  5 34  1  1
  6 35  1  0
  6 36  1  0
  7 37  1  6
  8 38  1  0
  9 39  1  1
 10 40  1  0
 10 41  1  0
 14 42  1  0
 18 43  1  0
 22 44  1  0
 23 45  1  0
 27 46  1  0
M  END

View in JSmol

Synonyms

Value	Source
2'-Deoxythymidine 5'-triphosphate	ChEBI
2'-Deoxythymidine triphosphate	ChEBI
5'-TTP	ChEBI
Deoxy-TTP	ChEBI
Deoxythymidine 5'-triphosphate	ChEBI
Deoxythymidine triphosphate	ChEBI
DTHD5'ppp	ChEBI
PPPDT	ChEBI
THYMIDINE-5'-triphosphATE	ChEBI
TTP	ChEBI
2'-Deoxythymidine 5'-triphosphoric acid	Generator
2'-Deoxythymidine triphosphoric acid	Generator
Deoxythymidine 5'-triphosphoric acid	Generator
Deoxythymidine triphosphoric acid	Generator
THYMIDINE-5'-triphosphoric acid	Generator
Thymidine 5'-triphosphoric acid	Generator
5-Methyl-dUTP	HMDB
dTTP	HMDB
Thymidine mono(tetrahydrogen triphosphate)	HMDB
Thymidine triphosphate	HMDB
Thymidine 5'-triphosphate, magnesium salt	HMDB
Thymidine 5'-triphosphate, trisodium salt	HMDB
2'-Deoxythymidine-5'-triphosphate	HMDB
Thymidine 5'-triphosphate, p''-(32)p-labeled	HMDB
2’-deoxythymidine 5’-triphosphate	HMDB
2’-deoxythymidine triphosphate	HMDB
5’-TTP	HMDB
Deoxythymidine 5’-triphosphate	HMDB
Thymidine 5’-triphosphate	HMDB
Thymidine 5'-triphosphate	HMDB

Chemical Formula

C₁₀H₁₇N₂O₁₄P₃

Average Mass

482.1683 Da

Monoisotopic Mass

481.98926 Da

IUPAC Name

{[hydroxy({[hydroxy({[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy})phosphoryl]oxy})phosphoryl]oxy}phosphonic acid

Traditional Name

dTTP

CAS Registry Number

365-08-2

SMILES

CC1=CN([C@H]2C[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O2)C(=O)NC1=O

InChI Identifier

InChI=1S/C10H17N2O14P3/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(24-8)4-23-28(19,20)26-29(21,22)25-27(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,19,20)(H,21,22)(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1

InChI Key

NHVNXKFIZYSCEB-XLPZGREQSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
2D NMR	[¹H, ¹³C]-HSQC NMR Spectrum (2D, 600 MHz, H₂O, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Abelmoschus esculentus	FooDB	FooDB
Actinidia chinensis	FooDB	FooDB
Agaricus bisporus	FooDB	FooDB
Agave	FooDB	FooDB
Allium ampeloprasum	FooDB	FooDB
Allium ascalonicum	FooDB	FooDB
Allium cepa	FooDB	FooDB
Allium cepa L.	FooDB	FooDB
Allium fistulosum	FooDB	FooDB
Allium sativum	FooDB	FooDB
Allium schoenoprasum	FooDB	FooDB
Allium tuberosum	FooDB	FooDB
Aloysia triphylla	FooDB	FooDB
Amaranthus	FooDB	FooDB
Amelanchier alnifolia	FooDB	FooDB
Anacardium occidentale	FooDB	FooDB
Ananas comosus	FooDB	FooDB
Anas platyrhynchos	FooDB	FooDB
Anatidae	FooDB	FooDB
Anethum graveolens	FooDB	FooDB
Angelica keiskei	FooDB	FooDB
Annona cherimola	FooDB	FooDB
Annona muricata	FooDB	FooDB
Annona reticulata	FooDB	FooDB
Annona squamosa	FooDB	FooDB
Anser anser	FooDB	FooDB
Anthriscus cerefolium	FooDB	FooDB
Apium graveolens	FooDB	FooDB
Apium graveolens var. dulce	FooDB	FooDB
Apium graveolens var. rapaceum	FooDB	FooDB
Apium graveolens var. secalinum	FooDB	FooDB
Arachis hypogaea	FooDB	FooDB
Arctium lappa	FooDB	FooDB
Armoracia rusticana	FooDB	FooDB
Artemisia dracunculus	FooDB	FooDB
Artemisia vulgaris	FooDB	FooDB
Artocarpus altilis	FooDB	FooDB
Artocarpus heterophyllus	FooDB	FooDB
Asparagus officinalis	FooDB	FooDB
Attalea speciosa	FooDB	FooDB
Auricularia auricula-judae	FooDB	FooDB
Auricularia polytricha	FooDB	FooDB
Avena sativa L.	FooDB	FooDB
Averrhoa carambola	FooDB	FooDB
Basella alba	FooDB	FooDB
Benincasa hispida	FooDB	FooDB
Bertholletia excelsa	FooDB	FooDB
Beta vulgaris	FooDB	FooDB
Beta vulgaris ssp. cicla	FooDB	FooDB
Bison bison	FooDB	FooDB
Borago officinalis	FooDB	FooDB
Bos taurus	FooDB	FooDB
Bos taurus X Bison bison	FooDB	FooDB
Brassica alboglabra	FooDB	FooDB
Brassica juncea	FooDB	FooDB
Brassica napus	FooDB	FooDB
Brassica napus var. napus	FooDB	FooDB
Brassica oleracea	FooDB	FooDB
Brassica oleracea var. botrytis	FooDB	FooDB
Brassica oleracea var. capitata	FooDB	FooDB
Brassica oleracea var. gemmifera	FooDB	FooDB
Brassica oleracea var. gongylodes	FooDB	FooDB
Brassica oleracea var. italica	FooDB	FooDB
Brassica oleracea var. sabauda	FooDB	FooDB
Brassica oleracea var. viridis	FooDB	FooDB
Brassica rapa	FooDB	FooDB
Brassica rapa ssp. chinensis	FooDB	FooDB
Brassica rapa var. pekinensis	FooDB	FooDB
Brassica rapa var. rapa	FooDB	FooDB
Brassica ruvo	FooDB	FooDB
Brosimum alicastrum	FooDB	FooDB
Bubalus bubalis	FooDB	FooDB
Byrsonima crassifolia	FooDB	FooDB
Cajanus cajan	FooDB	FooDB
Canarium ovatum	FooDB	FooDB
Cannabis sativa	CannabisDB	Not Available
Cantharellus cibarius	FooDB	FooDB
Capparis spinosa	FooDB	FooDB
Capra aegagrus hircus	FooDB	FooDB
Capsicum annuum	FooDB	FooDB
Capsicum annuum L.	FooDB	FooDB
Capsicum annuum var. annuum	FooDB	FooDB
Capsicum chinense	FooDB	FooDB
Capsicum pubescens	FooDB	FooDB
Carica papaya L.	FooDB	FooDB
Carissa macrocarpa	FooDB	FooDB
Carthamus tinctorius	FooDB	FooDB
Carum carvi	FooDB	FooDB
Carya	FooDB	FooDB
Carya illinoinensis	FooDB	FooDB
Castanea	FooDB	FooDB
Castanea crenata	FooDB	FooDB
Castanea mollissima	FooDB	FooDB
Castanea sativa	FooDB	FooDB
Ceratonia siliqua	FooDB	FooDB
Cervidae	FooDB	FooDB
Cervus canadensis	FooDB	FooDB
Chamaemelum nobile	FooDB	FooDB
Chamerion angustifolium	FooDB	FooDB
Chenopodium album	FooDB	FooDB
Chenopodium quinoa	FooDB	FooDB
Chrysanthemum coronarium	FooDB	FooDB
Cicer arietinum	FooDB	FooDB
Cichorium endivia	FooDB	FooDB
Cichorium intybus	FooDB	FooDB
Cinnamomum	FooDB	FooDB
Cinnamomum aromaticum	FooDB	FooDB
Cinnamomum verum	FooDB	FooDB
Cirsium	FooDB	FooDB
Citrullus lanatus	FooDB	FooDB
Citrus ×limon (L.) Burm. f. (pro sp.)	FooDB	FooDB
Citrus aurantiifolia	FooDB	FooDB
Citrus latifolia	FooDB	FooDB
Citrus limon	FooDB	FooDB
Citrus maxima	FooDB	FooDB
Citrus paradisi	FooDB	FooDB
Citrus reticulata	FooDB	FooDB
Citrus X sinensis (L.) Osbeck (pro. sp.)	FooDB	FooDB
Cocos nucifera	FooDB	FooDB
Coffea arabica L.	FooDB	FooDB
Coffea canephora	FooDB	FooDB
Colocasia esculenta	FooDB	FooDB
Columba	FooDB	FooDB
Columbidae	FooDB	FooDB
Corchorus olitorius	FooDB	FooDB
Coriandrum sativum L.	FooDB	FooDB
Corylus	FooDB	FooDB
Corylus avellana	FooDB	FooDB
Crateva religiosa	FooDB	FooDB
Crocus sativus	FooDB	FooDB
Cucumis melo	FooDB	FooDB
Cucumis metuliferus	FooDB	FooDB
Cucumis sativus L.	FooDB	FooDB
Cucurbita	FooDB	FooDB
Cucurbita maxima	FooDB	FooDB
Cucurbita moschata	FooDB	FooDB
Cuminum cyminum	FooDB	FooDB
Curcuma longa	FooDB	FooDB
Cydonia oblonga	FooDB	FooDB
Cymbopogon citratus	FooDB	FooDB
Cynara cardunculus	FooDB	FooDB
Cynara scolymus	FooDB	FooDB
Daucus carota	FooDB	FooDB
Daucus carota ssp. sativus	FooDB	FooDB
Dimocarpus longan	FooDB	FooDB
Dioscorea	FooDB	FooDB
Dioscorea pentaphylla	FooDB	FooDB
Diospyros	FooDB	FooDB
Diospyros kaki	FooDB	FooDB
Diospyros virginiana	FooDB	FooDB
Dromaius novaehollandiae	FooDB	FooDB
Durio zibethinus	FooDB	FooDB
Dysphania ambrosioides	FooDB	FooDB
Elaeis	FooDB	FooDB
Eleocharis dulcis	FooDB	FooDB
Elettaria cardamomum	FooDB	FooDB
Empetrum nigrum	FooDB	FooDB
Equus caballus	FooDB	FooDB
Eragrostis tef	FooDB	FooDB
Eriobotrya japonica	FooDB	FooDB
Eruca vesicaria subsp. Sativa	FooDB	FooDB
Eugenia javanica	FooDB	FooDB
Eugenia uniflora	FooDB	FooDB
Eutrema japonicum	FooDB	FooDB
Fagopyrum esculentum	FooDB	FooDB
Fagopyrum tataricum	FooDB	FooDB
Fagus	FooDB	FooDB
Feijoa sellowiana	FooDB	FooDB
Ficus carica	FooDB	FooDB
Flammulina velutipes	FooDB	FooDB
Foeniculum vulgare	FooDB	FooDB
Fragaria x ananassa	FooDB	FooDB
Gallus gallus	FooDB	FooDB
Garcinia mangostana	FooDB	FooDB
Gaylussacia baccata	FooDB	FooDB
Ginkgo biloba	FooDB	FooDB
Glycine max	FooDB	FooDB
Gossypium	FooDB	FooDB
Grifola frondosa	FooDB	FooDB
Hedysarum alpinum	FooDB	FooDB
Helianthus annuus L.	FooDB	FooDB
Helianthus tuberosus	FooDB	FooDB
Hibiscus sabbariffa	FooDB	FooDB
Hippophae rhamnoides	FooDB	FooDB
Hordeum vulgare	FooDB	FooDB
Hyssopus officinalis L.	FooDB	FooDB
Illicium verum	FooDB	FooDB
Ipomoea aquatica	FooDB	FooDB
Ipomoea batatas	FooDB	FooDB
Juglans	FooDB	FooDB
Juglans ailanthifolia	FooDB	FooDB
Juglans cinerea	FooDB	FooDB
Juglans nigra L.	FooDB	FooDB
Juglans regia	FooDB	FooDB
Lablab purpureus	FooDB	FooDB
Lactuca sativa	FooDB	FooDB
Lagenaria siceraria	FooDB	FooDB
Lagopus muta	FooDB	FooDB
Lathyrus sativus	FooDB	FooDB
Laurus nobilis L.	FooDB	FooDB
Lens culinaris	FooDB	FooDB
Lentinus edodes	FooDB	FooDB
Lepidium sativum	FooDB	FooDB
Leporidae	FooDB	FooDB
Lepus timidus	FooDB	FooDB
Levisticum officinale	FooDB	FooDB
Linum usitatissimum	FooDB	FooDB
Litchi chinensis	FooDB	FooDB
Luffa aegyptiaca	FooDB	FooDB
Lupinus	FooDB	FooDB
Lupinus albus	FooDB	FooDB
Macadamia	FooDB	FooDB
Macadamia tetraphylla	FooDB	FooDB
Malpighia emarginata	FooDB	FooDB
Malus	FooDB	FooDB
Malus pumila	FooDB	FooDB
Mammea americana	FooDB	FooDB
Mangifera indica	FooDB	FooDB
Manihot esculenta	FooDB	FooDB
Manilkara zapota	FooDB	FooDB
Maranta arundinacea	FooDB	FooDB
Matricaria recutita	FooDB	FooDB
Matteuccia struthiopteris	FooDB	FooDB
Medicago sativa	FooDB	FooDB
Melanitta fusca	FooDB	FooDB
Meleagris gallopavo	FooDB	FooDB
Melissa officinalis L.	FooDB	FooDB
Mentha	FooDB	FooDB
Mentha aquatica	FooDB	FooDB
Mentha arvensis	FooDB	FooDB
Mentha spicata	FooDB	FooDB
Mentha x piperita	FooDB	FooDB
Mespilus germanica	FooDB	FooDB
Metroxylon sagu	FooDB	FooDB
Momordica charantia	FooDB	FooDB
Morchellaceae	FooDB	FooDB
Morella rubra	FooDB	FooDB
Moringa oleifera	FooDB	FooDB
Morus	FooDB	FooDB
Morus nigra	FooDB	FooDB
Mus musculus	LOTUS Database	35616633
Musa acuminata	FooDB	FooDB
Musa x paradisiaca	FooDB	FooDB
Myrica	FooDB	FooDB
Myristica fragrans	FooDB	FooDB
Nelumbo	FooDB	FooDB
Nelumbo nucifera	FooDB	FooDB
Nephelium lappaceum	FooDB	FooDB
Numida meleagris	FooDB	FooDB
Nuphar lutea	FooDB	FooDB
Ocimum basilicum	FooDB	FooDB
Odocoileus	FooDB	FooDB
Oenothera biennis	FooDB	FooDB
Olea europaea	FooDB	FooDB
Opuntia	FooDB	FooDB
Opuntia cochenillifera	FooDB	FooDB
Opuntia macrorhiza	FooDB	FooDB
Origanum majorana	FooDB	FooDB
Origanum onites	FooDB	FooDB
Origanum vulgare	FooDB	FooDB
Origanum X majoricum	FooDB	FooDB
Oryctolagus	FooDB	FooDB
Oryza rufipogon	FooDB	FooDB
Oryza sativa	FooDB	FooDB
Ovis aries	FooDB	FooDB
Pachyrhizus erosus	FooDB	FooDB
Panax ginseng	FooDB	FooDB
Pangium edule	FooDB	FooDB
Panicum miliaceum	FooDB	FooDB
Passiflora edulis	FooDB	FooDB
Pastinaca sativa	FooDB	FooDB
Pediomelum esculentum	FooDB	FooDB
Perideridia oregana	FooDB	FooDB
Persea americana	FooDB	FooDB
Petasites japonicus	FooDB	FooDB
Petroselinum crispum	FooDB	FooDB
Phaseolus coccineus	FooDB	FooDB
Phaseolus lunatus	FooDB	FooDB
Phaseolus vulgaris	FooDB	FooDB
Phasianidae	FooDB	FooDB
Phasianus colchicus	FooDB	FooDB
Phoenix dactylifera	FooDB	FooDB
Photinia melanocarpa	FooDB	FooDB
Phyllostachys edulis	FooDB	FooDB
Physalis	FooDB	FooDB
Physalis philadelphica var. immaculata	FooDB	FooDB
Phytolacca americana	FooDB	FooDB
Pimenta dioica	FooDB	FooDB
Pimpinella anisum	FooDB	FooDB
Pinus	FooDB	FooDB
Pinus edulis	FooDB	FooDB
Piper nigrum L.	FooDB	FooDB
Pistacia vera	FooDB	FooDB
Pisum sativum	FooDB	FooDB
Pleurotus ostreatus	FooDB	FooDB
Polygonum alpinum	FooDB	FooDB
Portulaca oleracea	FooDB	FooDB
Pouteria sapota	FooDB	FooDB
Prunus armeniaca	FooDB	FooDB
Prunus avium	FooDB	FooDB
Prunus avium L.	FooDB	FooDB
Prunus cerasus	FooDB	FooDB
Prunus domestica	FooDB	FooDB
Prunus dulcis	FooDB	FooDB
Prunus persica	FooDB	FooDB
Prunus persica var. nucipersica	FooDB	FooDB
Prunus persica var. persica	FooDB	FooDB
Prunus tomentosa	FooDB	FooDB
Prunus virginiana	FooDB	FooDB
Psidium cattleianum	FooDB	FooDB
Psidium guajava	FooDB	FooDB
Psophocarpus tetragonolobus	FooDB	FooDB
Punica granatum	FooDB	FooDB
Pyrus communis	FooDB	FooDB
Pyrus pyrifolia	FooDB	FooDB
Quercus	FooDB	FooDB
Raphanus sativus	FooDB	FooDB
Raphanus sativus var. longipinnatus	FooDB	FooDB
Raphanus sativus var. sativus	FooDB	FooDB
Rheum rhabarbarum	FooDB	FooDB
Ribes aureum	FooDB	FooDB
Ribes glandulosum	FooDB	FooDB
Ribes nigrum	FooDB	FooDB
Ribes rubrum	FooDB	FooDB
Ribes uva-crispa	FooDB	FooDB
Rosa	FooDB	FooDB
Rubus arcticus	FooDB	FooDB
Rubus chamaemorus	FooDB	FooDB
Rubus idaeus	FooDB	FooDB
Rubus occidentalis	FooDB	FooDB
Rubus spectabilis	FooDB	FooDB
Rumex	FooDB	FooDB
Rumex acetosa	FooDB	FooDB
Rumex articus	FooDB	FooDB
Sagittaria latifolia	FooDB	FooDB
Salix pulchra	FooDB	FooDB
Salvia elegans	FooDB	FooDB
Salvia hispanica	FooDB	FooDB
Salvia officinalis	FooDB	FooDB
Salvia rosmarinus	FooDB	FooDB
Sambucus nigra	FooDB	FooDB
Sambucus nigra L.	FooDB	FooDB
Satureja hortensis L.	FooDB	FooDB
Satureja montana	FooDB	FooDB
Scorzonera hispanica	FooDB	FooDB
Secale cereale	FooDB	FooDB
Sechium edule	FooDB	FooDB
Sesamum indicum	FooDB	FooDB
Sesbania bispinosa	FooDB	FooDB
Sinapis alba	FooDB	FooDB
Sisymbrium	FooDB	FooDB
Solanum lycopersicum	FooDB	FooDB
Solanum lycopersicum var. cerasiforme	FooDB	FooDB
Solanum lycopersicum var. lycopersicum	FooDB	FooDB
Solanum melongena	FooDB	FooDB
Solanum quitoense	FooDB	FooDB
Solanum tuberosum	FooDB	FooDB
Sorbus aucuparia	FooDB	FooDB
Sorghum bicolor	FooDB	FooDB
Spinacia oleracea	FooDB	FooDB
Struthio camelus	FooDB	FooDB
Sus scrofa	FooDB	FooDB
Sus scrofa domestica	FooDB	FooDB
Syzygium aromaticum	FooDB	FooDB
Syzygium cumini	FooDB	FooDB
Syzygium jambos	FooDB	FooDB
Tamarindus indica	FooDB	FooDB
Taraxacum officinale	FooDB	FooDB
Tetragonia tetragonioides	FooDB	FooDB
Thelesperma	FooDB	FooDB
Thymus pulegioides	FooDB	FooDB
Thymus vulgaris	FooDB	FooDB
Tilia cordata	FooDB	FooDB
Tilia L.	FooDB	FooDB
Tragopogon porrifolius	FooDB	FooDB
Trigonella foenum-graecum	FooDB	FooDB
Triticum	FooDB	FooDB
Triticum aestivum	FooDB	FooDB
Triticum durum	FooDB	FooDB
Triticum spelta	FooDB	FooDB
Triticum turanicum	FooDB	FooDB
Typha angustifolia	FooDB	FooDB
Vaccinium	FooDB	FooDB
Vaccinium angustifolium	FooDB	FooDB
Vaccinium angustifolium X Vaccinium corymbosum	FooDB	FooDB
Vaccinium arboreum	FooDB	FooDB
Vaccinium corymbosum	FooDB	FooDB
Vaccinium deliciosum	FooDB	FooDB
Vaccinium elliottii	FooDB	FooDB
Vaccinium macrocarpon	FooDB	FooDB
Vaccinium myrtilloides	FooDB	FooDB
Vaccinium myrtillus	FooDB	FooDB
Vaccinium ovalifolium	FooDB	FooDB
Vaccinium ovatum	FooDB	FooDB
Vaccinium oxycoccos	FooDB	FooDB
Vaccinium parvifolium	FooDB	FooDB
Vaccinium reticulatum	FooDB	FooDB
Vaccinium stamineum	FooDB	FooDB
Vaccinium uliginosum	FooDB	FooDB
Vaccinium vitis-idaea	FooDB	FooDB
Valerianella locusta	FooDB	FooDB
Vanilla	FooDB	FooDB
Verbena officinalis	FooDB	FooDB
Viburnum edule	FooDB	FooDB
Vicia faba	FooDB	FooDB
Vigna aconitifolia	FooDB	FooDB
Vigna angularis	FooDB	FooDB
Vigna mungo	FooDB	FooDB
Vigna radiata	FooDB	FooDB
Vigna umbellata	FooDB	FooDB
Vigna unguiculata	FooDB	FooDB
Vigna unguiculata ssp. cylindrica	FooDB	FooDB
Vigna unguiculata ssp. unguiculata	FooDB	FooDB
Vigna unguiculata var. sesquipedalis	FooDB	FooDB
Vitis	FooDB	FooDB
Vitis aestivalis	FooDB	FooDB
Vitis labrusca	FooDB	FooDB
Vitis rotundifolia	FooDB	FooDB
Vitis vinifera L.	FooDB	FooDB
Xanthosoma sagittifolium	FooDB	FooDB
Zea mays L.	FooDB	FooDB
Zingiber officinale	FooDB	FooDB
Zizania	FooDB	FooDB
Zizania aquatica	FooDB	FooDB
Ziziphus zizyphus	FooDB	FooDB

Species Where Detected

Species Name	Source	Reference
Escherichia coli	KNApSAcK Database	22123792

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleoside triphosphates. These are pyrimidine nucleotides with a triphosphate group linked to the ribose moiety lacking a hydroxyl group at position 2.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleotides

Sub Class

Pyrimidine deoxyribonucleotides

Direct Parent

Pyrimidine 2'-deoxyribonucleoside triphosphates

Alternative Parents

Substituents

Pyrimidine 2'-deoxyribonucleoside triphosphate
Pyrimidone
Monoalkyl phosphate
Hydropyrimidine
Organic phosphoric acid derivative
Phosphoric acid ester
Pyrimidine
Alkyl phosphate
Heteroaromatic compound
Vinylogous amide
Tetrahydrofuran
Lactam
Secondary alcohol
Urea
Oxacycle
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Alcohol
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

pyrimidine 2'-deoxyribonucleoside 5'-triphosphate (CHEBI:18077 )
thymidine phosphate (CHEBI:18077 )
Deoxyribonucleotides (C00459 )

Physical Properties

State

Solid

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
Water Solubility	7.78 g/L	ALOGPS
logP	-0.39	ALOGPS
logP	-2.1	ChemAxon
logS	-1.7	ALOGPS
pKa (Strongest Acidic)	0.9	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	238.69 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	88.03 m³·mol⁻¹	ChemAxon
Polarizability	36.6 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0001342

DrugBank ID

DB02452

Phenol Explorer Compound ID

Not Available

FoodDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Wikipedia Link

Thymidine_triphosphate

METLIN ID

Not Available

PubChem Compound

64968

PDB ID

Not Available

ChEBI ID

18077

Good Scents ID

Not Available

References

General References

Dahlmann N, Ueckermann C: Separation of deoxythymidine-5'-triphosphatase from unspecific hydrolases. A recommended micromethod in the diagnostic evaluation of human carcinoma. Anticancer Res. 1984 Jul-Oct;4(4-5):299-303. [PubMed:6091528 ]
Dahlmann N: Human serum thymidine triphosphate nucleotidohydrolase: purification and properties of a new enzyme. Biochemistry. 1982 Dec 21;21(26):6634-9. [PubMed:6297538 ]
Schultes BC, Fischbach E, Dahlmann N: Purification and characterization of two different thymidine-5'-triphosphosphate-hydrolysing enzymes in human serum. Biol Chem Hoppe Seyler. 1992 May;373(5):237-47. [PubMed:1320895 ]
Dar HA, Zaheer T, Ullah N, Bakhtiar SM, Zhang T, Yasir M, Azhar EI, Ali A: Pangenome Analysis of Mycobacterium tuberculosis Reveals Core-Drug Targets and Screening of Promising Lead Compounds for Drug Discovery. Antibiotics (Basel). 2020 Nov 17;9(11). pii: antibiotics9110819. doi: 10.3390/antibiotics9110819. [PubMed:33213029 ]
Pagadala NS: AZT acts as an anti-influenza nucleotide triphosphate targeting the catalytic site of A/PR/8/34/H1N1 RNA dependent RNA polymerase. J Comput Aided Mol Des. 2019 Apr;33(4):387-404. doi: 10.1007/s10822-019-00189-w. Epub 2019 Feb 9. [PubMed:30739239 ]
Doharey PK, Singh SK, Verma P, Verma A, Rathaur S, Saxena JK: Insights into the structure-function relationship of Brugia malayi thymidylate kinase (BmTMK). Int J Biol Macromol. 2016 Jul;88:565-71. doi: 10.1016/j.ijbiomac.2016.04.004. Epub 2016 Apr 1. [PubMed:27044348 ]
Funai T, Nakamura J, Miyazaki Y, Kiriu R, Nakagawa O, Wada S, Ono A, Urata H: Regulated incorporation of two different metal ions into programmed sites in a duplex by DNA polymerase catalyzed primer extension. Angew Chem Int Ed Engl. 2014 Jun 23;53(26):6624-7. doi: 10.1002/anie.201311235. Epub 2014 Apr 9. [PubMed:24719384 ]
Cui Q, Shin WS, Luo Y, Tian J, Cui H, Yin D: Thymidylate kinase: an old topic brings new perspectives. Curr Med Chem. 2013;20(10):1286-305. doi: 10.2174/0929867311320100006. [PubMed:23394555 ]
Taanman JW, Heiske M, Letellier T: Measurement of kinetic parameters of human platelet DNA polymerase gamma. Methods. 2010 Aug;51(4):374-8. doi: 10.1016/j.ymeth.2010.03.002. Epub 2010 Mar 16. [PubMed:20227504 ]

Showing NP-Card for Thymidine 5'-triphosphate (NP0001235)

MOL for NP0001235 (Thymidine 5'-triphosphate)

3D MOL for NP0001235 (Thymidine 5'-triphosphate)

3D SDF for NP0001235 (Thymidine 5'-triphosphate)

3D-SDF for NP0001235 (Thymidine 5'-triphosphate)

PDB for NP0001235 (Thymidine 5'-triphosphate)

3D PDB for NP0001235 (Thymidine 5'-triphosphate)

SMILES for NP0001235 (Thymidine 5'-triphosphate)

INCHI for NP0001235 (Thymidine 5'-triphosphate)

Structure for NP0001235 (Thymidine 5'-triphosphate)

3D Structure for NP0001235 (Thymidine 5'-triphosphate)