Showing NP-Card for cis,cis-Muconic acid (NP0001219)

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Record Information
Version2.0
Created at2007-05-23 00:53:22 UTC
Updated at2025-02-11 15:44:55 UTC
NP-MRD IDNP0001219
Natural Product DOIhttps://doi.org/10.57994/1008
Secondary Accession NumbersNone
Natural Product Identification
Common Namecis,cis-Muconic acid
DescriptionCis-cis-Muconic acid is a presumptive metabolite of benzene. Muconic acid was first isolated from the urine of rabbits and dogs in 1909 (M. Jaffe, Z Physiol Chem 62:58-67). It was originally thought that if muconic acid was formed by the opening of the benzene ring in vivo then the cis-cis isomer should be the initial (and primary) product. However subsequent studies conducted in the 1950s proved that trans-trans-muconic acid is a true metabolite of benzene in mammals (Parke DV, Williams RT. Biochem J 51:339-348 (1952)). Furthermore, dosing rabbits with phenol or catechol also resulted in the urinary excretion of trans-trans-muconic acid. The oxidative ring opening of benzene first gives rise to cis-cis-muconaldehyde, which then isomerizes to cis-trans- and trans-trans-muconaldehyde; the latter is oxidized in vivo to trans-trans-muconic acid. Isomerization of the trans-trans form may take place in vivo to yield small amounts if the cis-cis and cis-trans form of muconic acid. Cis-cis-Muconic acid may also be generated from microbial fermentation of benzoic acid. Certain strains of arthobacter are particularly efficient at this process. Cis-cis-Muconic acid can also be found in Pseudomonas and Escherichia coli (https://Link.Springer.Com/article/10.1007/BF00250491) (PMID:26360870 ).
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for NP0001219 (cis,cis-Muconic acid)

  Mrv1652305271900062D          

 10  9  0  0  0  0            999 V2000
 9993.2135 9993.3504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9993.9277 9993.7625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9994.7546 9993.7625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9995.4682 9993.3504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.1837 9993.7625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9995.4682 9992.5250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9992.3880 9993.3504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9991.6733 9993.7625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9990.9586 9993.3504    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9991.6733 9994.5873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  7  2  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
M  END
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3D MOL for NP0001219 (cis,cis-Muconic acid)

HMDB0006331
     RDKit          3D
cis,cis-Muconic acid
 16 15  0  0  0  0  0  0  0  0999 V2000
    2.0259   -2.0091   -0.1391 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3437   -0.8240   -0.1167 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7536   -0.5880   -0.2183 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5668    0.3671   -0.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2518    0.4136    0.0976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5227   -0.7871    0.1106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8343   -0.7499    0.2154 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6072    0.4245    0.3232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8967    0.2333    0.4171 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2795    1.7439    0.3501 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1866    0.0990    0.3657 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0728    1.3710   -0.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2187    1.4201    0.1749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0395   -1.7840    0.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3584   -1.7469    0.2168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4442    2.4164   -0.3844 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  3 11  1  0
  4 12  1  0
  5 13  1  0
  6 14  1  0
  7 15  1  0
 10 16  1  0
M  END
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3D SDF for NP0001219 (cis,cis-Muconic acid)

  Mrv1652305271900062D          

 10  9  0  0  0  0            999 V2000
 9993.2135 9993.3504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9993.9277 9993.7625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9994.7546 9993.7625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9995.4682 9993.3504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.1837 9993.7625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9995.4682 9992.5250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9992.3880 9993.3504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9991.6733 9993.7625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9990.9586 9993.3504    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9991.6733 9994.5873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  7  2  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0001219

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(=O)\C=C/C=C\C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C6H6O4/c7-5(8)3-1-2-4-6(9)10/h1-4H,(H,7,8)(H,9,10)/b3-1-,4-2-

> <INCHI_KEY>
TXXHDPDFNKHHGW-CCAGOZQPSA-N

> <FORMULA>
C6H6O4

> <MOLECULAR_WEIGHT>
142.1094

> <EXACT_MASS>
142.02660868

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
16

> <JCHEM_AVERAGE_POLARIZABILITY>
12.537125034306658

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z,4Z)-hexa-2,4-dienedioic acid

> <ALOGPS_LOGP>
0.67

> <JCHEM_LOGP>
0.486301342

> <ALOGPS_LOGS>
-1.61

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.654855678562283

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.87177055186766

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
34.925599999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.48e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
muconic acid

> <JCHEM_VEBER_RULE>
0

$$$$
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3D-SDF for NP0001219 (cis,cis-Muconic acid)

HMDB0006331
     RDKit          3D
cis,cis-Muconic acid
 16 15  0  0  0  0  0  0  0  0999 V2000
    2.0259   -2.0091   -0.1391 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3437   -0.8240   -0.1167 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7536   -0.5880   -0.2183 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5668    0.3671   -0.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2518    0.4136    0.0976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5227   -0.7871    0.1106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8343   -0.7499    0.2154 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6072    0.4245    0.3232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8967    0.2333    0.4171 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2795    1.7439    0.3501 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1866    0.0990    0.3657 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0728    1.3710   -0.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2187    1.4201    0.1749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0395   -1.7840    0.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3584   -1.7469    0.2168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4442    2.4164   -0.3844 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  3 11  1  0
  4 12  1  0
  5 13  1  0
  6 14  1  0
  7 15  1  0
 10 16  1  0
M  END
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PDB for NP0001219 (cis,cis-Muconic acid)

HEADER    PROTEIN                                 27-MAY-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-19         0                                  
HETATM    1  C   UNK     0    8653.9998654.254   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0    8655.3328655.023   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0    8656.8758655.023   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0    8658.2078654.254   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0    8659.5438655.023   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0    8658.2078652.713   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0    8652.4588654.254   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8651.1238655.023   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0    8649.7898654.254   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0    8651.1238656.563   0.000  0.00  0.00           O+0
CONECT    1    2    7                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4                                                            
CONECT    7    1    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   18    0
END
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3D PDB for NP0001219 (cis,cis-Muconic acid)

COMPND    HMDB0006331
HETATM    1  O1  UNL     1       2.026  -2.009  -0.139  1.00  0.00           O  
HETATM    2  C1  UNL     1       2.344  -0.824  -0.117  1.00  0.00           C  
HETATM    3  O2  UNL     1       3.754  -0.588  -0.218  1.00  0.00           O  
HETATM    4  C2  UNL     1       1.567   0.367  -0.008  1.00  0.00           C  
HETATM    5  C3  UNL     1       0.252   0.414   0.098  1.00  0.00           C  
HETATM    6  C4  UNL     1      -0.523  -0.787   0.111  1.00  0.00           C  
HETATM    7  C5  UNL     1      -1.834  -0.750   0.215  1.00  0.00           C  
HETATM    8  C6  UNL     1      -2.607   0.425   0.323  1.00  0.00           C  
HETATM    9  O3  UNL     1      -3.897   0.233   0.417  1.00  0.00           O  
HETATM   10  O4  UNL     1      -2.280   1.744   0.350  1.00  0.00           O  
HETATM   11  H1  UNL     1       4.187   0.099   0.366  1.00  0.00           H  
HETATM   12  H2  UNL     1       2.073   1.371  -0.008  1.00  0.00           H  
HETATM   13  H3  UNL     1      -0.219   1.420   0.175  1.00  0.00           H  
HETATM   14  H4  UNL     1      -0.040  -1.784   0.033  1.00  0.00           H  
HETATM   15  H5  UNL     1      -2.358  -1.747   0.217  1.00  0.00           H  
HETATM   16  H6  UNL     1      -2.444   2.416  -0.384  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    3   11
CONECT    4    5    5   12
CONECT    5    6   13
CONECT    6    7    7   14
CONECT    7    8   15
CONECT    8    9    9   10
CONECT   10   16
END
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SMILES for NP0001219 (cis,cis-Muconic acid)

OC(=O)\C=C/C=C\C(O)=O
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INCHI for NP0001219 (cis,cis-Muconic acid)

InChI=1S/C6H6O4/c7-5(8)3-1-2-4-6(9)10/h1-4H,(H,7,8)(H,9,10)/b3-1-,4-2-
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View in JSmolView NMR Assignments
Synonyms
ValueSource
(2Z,4Z)-HEXA-2,4-dienedioIC ACIDChEBI
(Z,Z)-2,4-Hexadienedioic acidChEBI
cis,cis-2,4-Hexadienedioic acidChEBI
cis,cis-HexadienedioateKegg
(2Z,4Z)-HEXA-2,4-dienedioateGenerator
(Z,Z)-2,4-HexadienedioateGenerator
cis,cis-2,4-HexadienedioateGenerator
cis,cis-Hexadienedioic acidGenerator
cis,cis-MuconateGenerator
trans-trans-MuconateHMDB
2,4-HexadienedioateHMDB
2,4-Hexadienedioic acidHMDB
Muconic acidHMDB
Muconic acid, (e,e)-isomerHMDB
trans-beta-Hydromuconic acidHMDB
trans,trans-Muconic acidHMDB
Chemical FormulaC6H6O4
Average Mass142.1094 Da
Monoisotopic Mass142.02661 Da
IUPAC Name(2Z,4Z)-hexa-2,4-dienedioic acid
Traditional Namemuconic acid
CAS Registry Number1119-72-8
SMILES
OC(=O)\C=C/C=C\C(O)=O
InChI Identifier
InChI=1S/C6H6O4/c7-5(8)3-1-2-4-6(9)10/h1-4H,(H,7,8)(H,9,10)/b3-1-,4-2-
InChI KeyTXXHDPDFNKHHGW-CCAGOZQPSA-N
Experimental Spectra
Predicted Spectra
Chemical Shift Submissions
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR1H NMR Spectrum (1D, 600, CD3OD, simulated)bgnzk@missouri.eduSumner Lab, MU Metabolomics Center, University of Missouri, Columbia. MO, USADr. Bharat Goel2024-05-08View Spectrum
Species
Species of Origin
Species Where Detected
Species NameSourceReference
Pseudomonas putidaKNApSAcK Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentMedium-chain fatty acids
Alternative Parents
Substituents
  • Medium-chain fatty acid
  • Unsaturated fatty acid
  • Dicarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
Water Solubility3.48 g/LALOGPS
logP0.67ALOGPS
logP0.49ChemAxon
logS-1.6ALOGPS
pKa (Strongest Acidic)3.87ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area74.6 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity34.93 m³·mol⁻¹ChemAxon
Polarizability12.54 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0006331
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB023893
KNApSAcK IDC00007490
Chemspider ID4444151
KEGG Compound IDC02480
BioCyc IDNot Available
BiGG ID36677
Wikipedia LinkMuconic acid
METLIN IDNot Available
PubChem Compound5280518
PDB IDNot Available
ChEBI ID16508
Good Scents IDNot Available
References
General References