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Showing NP-Card for Rhamnose (NP0001208)

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Record Information
Version2.0
Created at2005-11-16 15:48:42 UTC
Updated at2021-08-19 23:58:55 UTC
NP-MRD IDNP0001208
Secondary Accession NumbersNone
Natural Product Identification
Common NameRhamnose
DescriptionRhamnose (Rham) is a naturally occurring deoxy sugar. It can be classified as either a methyl-pentose or a 6-deoxy-hexose. Rhamnose occurs in nature in its L-form as L-rhamnose (6-deoxy-L-mannose). This is unusual, since most of the naturally occurring sugars are in D-form. Rhamnose is commonly bound to other sugars in nature. It is a common glycone component of glycosides from many plants. Rhamnose is also a component of the outer cell membrane of certain bacteria. L-rhamnose is metabolized to L-Lactaldehyde, which is a branching point in the metabolic pathway of L-fucose and L-rhamnose utilization. It exists in two anomeric forms, alpha-L-rhamnose and beta-L-rhamnose. Rhamnose has been found in Klebsiella, Pseudomonas (https://Link.Springer.Com/article/10.1007/BF00369505) (https://Onlinelibrary.Wiley.Com/doi/abs/10.1002/Ejlt.200300816).
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for NP0001208 (Rhamnose)

Untitled Document-1
  Mrv1652304202021562D          

 11 11  0  0  0  0            999 V2000
   -0.7145    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  1  1  0  0  0  0
  1  7  1  6  0  0  0
  3  8  1  6  0  0  0
  4  9  1  6  0  0  0
  2 10  1  1  0  0  0
  5 11  1  0  0  0  0
M  END
Download

3D MOL for NP0001208 (Rhamnose)

HMDB0000849
     RDKit          3D
Rhamnose
 23 23  0  0  0  0  0  0  0  0999 V2000
   -2.0937   -0.8451    0.7146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9241   -0.8156   -0.2855 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0754   -1.5567    0.2492 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3484   -1.1192    0.0871 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7924   -1.0569   -1.2153 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3992    0.2997    0.6642 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7367    0.2433    1.8827 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6741    1.1369   -0.3538 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5649    2.4756    0.0857 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6407    0.5542   -0.7175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7933    0.7036   -2.1167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0060   -0.6007    0.1246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9943   -0.0577    1.4743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2429   -1.8520    1.1192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3267   -1.3934   -1.1723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0316   -1.7372    0.6908 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2730   -1.5689   -1.8564 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4204    0.6280    0.8496 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3863    0.0269    2.6045 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3479    1.1934   -1.2499 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5813    2.5262    1.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4307    1.2460   -0.2951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1791    1.5696   -2.3540 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10  2  1  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  6
  4 16  1  0
  5 17  1  0
  6 18  1  1
  7 19  1  0
  8 20  1  6
  9 21  1  0
 10 22  1  1
 11 23  1  0
M  END
Download

3D SDF for NP0001208 (Rhamnose)

Untitled Document-1
  Mrv1652304202021562D          

 11 11  0  0  0  0            999 V2000
   -0.7145    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  1  1  0  0  0  0
  1  7  1  6  0  0  0
  3  8  1  6  0  0  0
  4  9  1  6  0  0  0
  2 10  1  1  0  0  0
  5 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0001208

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1OC(O)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6?/m0/s1

> <INCHI_KEY>
SHZGCJCMOBCMKK-JFNONXLTSA-N

> <FORMULA>
C6H12O5

> <MOLECULAR_WEIGHT>
164.1565

> <EXACT_MASS>
164.068473494

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
15.364952562022367

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,4R,5R,6S)-6-methyloxane-2,3,4,5-tetrol

> <ALOGPS_LOGP>
-2.39

> <JCHEM_LOGP>
-1.885629251333333

> <ALOGPS_LOGS>
0.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.724419195509512

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.30218058050956

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6121738272477764

> <JCHEM_POLAR_SURFACE_AREA>
90.15

> <JCHEM_REFRACTIVITY>
34.37969999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.27e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
L-(+)-rhamnose

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for NP0001208 (Rhamnose)

HMDB0000849
     RDKit          3D
Rhamnose
 23 23  0  0  0  0  0  0  0  0999 V2000
   -2.0937   -0.8451    0.7146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9241   -0.8156   -0.2855 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0754   -1.5567    0.2492 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3484   -1.1192    0.0871 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7924   -1.0569   -1.2153 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3992    0.2997    0.6642 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7367    0.2433    1.8827 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6741    1.1369   -0.3538 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5649    2.4756    0.0857 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6407    0.5542   -0.7175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7933    0.7036   -2.1167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0060   -0.6007    0.1246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9943   -0.0577    1.4743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2429   -1.8520    1.1192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3267   -1.3934   -1.1723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0316   -1.7372    0.6908 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2730   -1.5689   -1.8564 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4204    0.6280    0.8496 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3863    0.0269    2.6045 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3479    1.1934   -1.2499 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5813    2.5262    1.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4307    1.2460   -0.2951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1791    1.5696   -2.3540 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10  2  1  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  6
  4 16  1  0
  5 17  1  0
  6 18  1  1
  7 19  1  0
  8 20  1  6
  9 21  1  0
 10 22  1  1
 11 23  1  0
M  END
Download

PDB for NP0001208 (Rhamnose)

HEADER    PROTEIN                                 20-APR-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: Untitled Document-1                               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-20         0                                  
HETATM    1  C   UNK     0      -1.334   1.540   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   1.540   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       0.000   2.310   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.667   2.310   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.000  -2.310   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       2.667  -0.770   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      -2.667  -0.770   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       2.667   2.310   0.000  0.00  0.00           O+0
CONECT    1    2    6    7                                                  
CONECT    2    1    3   10                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5    9                                                  
CONECT    5    4    6   11                                                  
CONECT    6    5    1                                                       
CONECT    7    1                                                            
CONECT    8    3                                                            
CONECT    9    4                                                            
CONECT   10    2                                                            
CONECT   11    5                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   22    0
END
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3D PDB for NP0001208 (Rhamnose)

COMPND    HMDB0000849
HETATM    1  C1  UNL     1      -2.094  -0.845   0.715  1.00  0.00           C  
HETATM    2  C2  UNL     1      -0.924  -0.816  -0.285  1.00  0.00           C  
HETATM    3  O1  UNL     1       0.075  -1.557   0.249  1.00  0.00           O  
HETATM    4  C3  UNL     1       1.348  -1.119   0.087  1.00  0.00           C  
HETATM    5  O2  UNL     1       1.792  -1.057  -1.215  1.00  0.00           O  
HETATM    6  C4  UNL     1       1.399   0.300   0.664  1.00  0.00           C  
HETATM    7  O3  UNL     1       0.737   0.243   1.883  1.00  0.00           O  
HETATM    8  C5  UNL     1       0.674   1.137  -0.354  1.00  0.00           C  
HETATM    9  O4  UNL     1       0.565   2.476   0.086  1.00  0.00           O  
HETATM   10  C6  UNL     1      -0.641   0.554  -0.718  1.00  0.00           C  
HETATM   11  O5  UNL     1      -0.793   0.704  -2.117  1.00  0.00           O  
HETATM   12  H1  UNL     1      -3.006  -0.601   0.125  1.00  0.00           H  
HETATM   13  H2  UNL     1      -1.994  -0.058   1.474  1.00  0.00           H  
HETATM   14  H3  UNL     1      -2.243  -1.852   1.119  1.00  0.00           H  
HETATM   15  H4  UNL     1      -1.327  -1.393  -1.172  1.00  0.00           H  
HETATM   16  H5  UNL     1       2.032  -1.737   0.691  1.00  0.00           H  
HETATM   17  H6  UNL     1       1.273  -1.569  -1.856  1.00  0.00           H  
HETATM   18  H7  UNL     1       2.420   0.628   0.850  1.00  0.00           H  
HETATM   19  H8  UNL     1       1.386   0.027   2.605  1.00  0.00           H  
HETATM   20  H9  UNL     1       1.348   1.193  -1.250  1.00  0.00           H  
HETATM   21  H10 UNL     1       0.581   2.526   1.070  1.00  0.00           H  
HETATM   22  H11 UNL     1      -1.431   1.246  -0.295  1.00  0.00           H  
HETATM   23  H12 UNL     1      -1.179   1.570  -2.354  1.00  0.00           H  
CONECT    1    2   12   13   14
CONECT    2    3   10   15
CONECT    3    4
CONECT    4    5    6   16
CONECT    5   17
CONECT    6    7    8   18
CONECT    7   19
CONECT    8    9   10   20
CONECT    9   21
CONECT   10   11   22
CONECT   11   23
END
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SMILES for NP0001208 (Rhamnose)

C[C@@H]1OC(O)[C@H](O)[C@H](O)[C@H]1O
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INCHI for NP0001208 (Rhamnose)

InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6?/m0/s1
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View in JSmol
Synonyms
ValueSource
6-Deoxy-L-mannoseChEBI
L-(+)-RhamnoseChEBI
L-MannomethyloseChEBI
L-RhaChEBI
L-RhamnoseChEBI
L-RhamnopyranoseKegg
6-Deoxy-L(+)-mannoseHMDB
6-Deoxy-L-mannopyranoseHMDB
6-Deoxy-mannoseHMDB
6-DeoxyhexopyranoseHMDB
6-DeoxyhexoseHMDB
6-DeoxymannoseHMDB
IsodulcitHMDB
IsodulcitolHMDB
L(+)-RhamnoseHMDB
L(+)-Rhamnose monohydrateHMDB
L-(+)-Rhamnose 1-hydrateHMDB
L-(+)-Rhamnose hydrate = 6-deoxy-L-mannose monohydrateHMDB
L-(+)-Rhamnose monohydrateHMDB
L-Rhamnose for biochemistryHMDB
L-Rhamnose monohydrateHMDB
LocaoseHMDB
mono(6-Deoxy-b-L-mannopyranosyl) esterHMDB
mono(6-Deoxy-beta-L-mannopyranosyl) esterHMDB
p-(6-Deoxy-b-L-mannopyranosyl) esterHMDB
p-(6-Deoxy-beta-L-mannopyranosyl) esterHMDB
RhamnopyranoseHMDB
RhamnosemonohydrateHMDB
UDP-RhamnoseHMDB
Uridine 5-pyrophosphateHMDB
Uridine diphosphate rhamnoseHMDB
DeoxymannoseHMDB
Rhamnose, L isomerHMDB
Rhamnose, L-isomerHMDB
RhamnoseMeSH, HMDB
Chemical FormulaC6H12O5
Average Mass164.1565 Da
Monoisotopic Mass164.06847 Da
IUPAC Name(3R,4R,5R,6S)-6-methyloxane-2,3,4,5-tetrol
Traditional NameL-(+)-rhamnose
CAS Registry Number3615-41-6
SMILES
C[C@@H]1OC(O)[C@H](O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6?/m0/s1
InChI KeySHZGCJCMOBCMKK-JFNONXLTSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, experimental)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
2D NMR[1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Acacia catechuPlant
Acacia ixiophyllaPlant
Aeonium spp.Plant
Anthemis altissimaPlant
Apis mellifera ligusticaPlant
Arabidopsis thalianaKNApSAcK Database
Artemisia annuaPlant
Artemisia campestris ssp. glutinosaPlant
Artemisia glutinosaPlant
Averrhoa carambolaPlant
Baccharis pilularisPlant
Beta vulgarisLOTUS Database
Blumea balsamiferaPlant
Bombax ceibaLOTUS Database
Cajanus cajanLOTUS Database
Cannabis sativaCannabisDB
      Not Available
Capparis tweedianaPlant
Cassinia vauvilliersiiPlant
Centaurea collina L.Plant
Chromolaena meridensisPlant
Chromolaena odorataPlant
Chrysothamnus nauseosusPlant
Codiaeum variegatumLOTUS Database
Codonopsis pilosulaLOTUS Database
Daucus carotaLOTUS Database
Dillenia spp.Plant
Erysimum carniolicumPlant
Fagopyrum esculentumLOTUS Database
Flourensia thuriferaPlant
Glandularia bipinnatifidaPlant
Helianthus annuusLOTUS Database
Heliotropium stenophyllumPlant
Jatropha gossypifoliaLOTUS Database
Joannesia princepsLOTUS Database
Lantana camaraLOTUS Database
Ligusticum lucidumLOTUS Database
Madia elegansPlant
Medicago lupulinaLOTUS Database
Meehania urticifoliaPlant
Moringa oleiferaPlant
Moringa peregrinaPlant
Moringa stenopetalaPlant
Nothofagus obliquaPlant
Ozothamnus expansifoliusPlant
Ozothamnus scutellifoliusPlant
Persicaria lapathifoliaPlant
Plantago maritimaLOTUS Database
Poa huecuLOTUS Database
Pogostemon cablinPlant
Polygonum amphibiumPlant
Polygonum avicularePlant
Polygonum bistortaPlant
Polygonum convolvulusPlant
Polygonum hydropiperPlant
Polygonum mitePlant
Polygonum persicariaPlant
Populus nigraPlant
Pulicaria dysentericaPlant
Ramalina fraxineaLOTUS Database
Rhamnus alaternusPlant
Rhamnus catharticaPlant
Rhamnus dispermaPlant
Rhamnus saxatilisPlant
Siphoneugena densifloraLOTUS Database
Siraitia grosvenoriiLOTUS Database
Smilax ripariaPlant
Suaeda aegyptiacaLOTUS Database
Swertia angustifoliaLOTUS Database
Syzygium aromaticumPlant
Taxus chinensisPlant
Tetracera asiaticaPlant
Tetracera spp.Plant
Teucrium poliumLOTUS Database
Thalictrum aquilegifoliumLOTUS Database
Trifolium repensPlant
Turnera diffusaLOTUS Database
Vellozia streptophyllaPlant
Verbena hybridaPlant
Viscum albumPlant
Viscum cruciatumPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentHexoses
Alternative Parents
Substituents
  • Hexose monosaccharide
  • Oxane
  • Secondary alcohol
  • Hemiacetal
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Hydrocarbon derivative
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting Point122 °CNot Available
Boiling Point398.00 to 399.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility1000000 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP-2.459 (est)The Good Scents Company Information System
Predicted Properties
PropertyValueSource
Water Solubility827 g/LALOGPS
logP-2.4ALOGPS
logP-1.9ChemAxon
logS0.7ALOGPS
pKa (Strongest Acidic)11.3ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area90.15 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity34.38 m³·mol⁻¹ChemAxon
Polarizability15.36 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0000849
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB112365
KNApSAcK IDC00001129
Chemspider ID23642
KEGG Compound IDC00507
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkRhamnose
METLIN ID5812
PubChem Compound25310
PDB IDNot Available
ChEBI ID62346
Good Scents IDrw1037731
References
General References
  1. Citron DM, Baron EJ, Finegold SM, Goldstein EJ: Short prereduced anaerobically sterilized (PRAS) biochemical scheme for identification of clinical isolates of bile-resistant Bacteroides species. J Clin Microbiol. 1990 Oct;28(10):2220-3. [PubMed:2229345 ]
  2. Ohri SK, Somasundaram S, Koak Y, Macpherson A, Keogh BE, Taylor KM, Menzies IS, Bjarnason I: The effect of intestinal hypoperfusion on intestinal absorption and permeability during cardiopulmonary bypass. Gastroenterology. 1994 Feb;106(2):318-23. [PubMed:8299899 ]
  3. Miki K, Butler R, Moore D, Davidson G: Rapid and simultaneous quantification of rhamnose, mannitol, and lactulose in urine by HPLC for estimating intestinal permeability in pediatric practice. Clin Chem. 1996 Jan;42(1):71-5. [PubMed:8565237 ]
  4. Nomura R, Nakano K, Ooshima T: Molecular analysis of the genes involved in the biosynthesis of serotype specific polysaccharide in the novel serotype k strains of Streptococcus mutans. Oral Microbiol Immunol. 2005 Oct;20(5):303-9. [PubMed:16101966 ]
  5. Frirdich E, Whitfield C: Lipopolysaccharide inner core oligosaccharide structure and outer membrane stability in human pathogens belonging to the Enterobacteriaceae. J Endotoxin Res. 2005;11(3):133-44. [PubMed:15949142 ]
  6. Albers MJ, Steyerberg EW, Hazebroek FW, Mourik M, Borsboom GJ, Rietveld T, Huijmans JG, Tibboel D: Glutamine supplementation of parenteral nutrition does not improve intestinal permeability, nitrogen balance, or outcome in newborns and infants undergoing digestive-tract surgery: results from a double-blind, randomized, controlled trial. Ann Surg. 2005 Apr;241(4):599-606. [PubMed:15798461 ]
  7. Anderson AD, Poon P, Greenway GM, MacFie J: A simple method for the analysis of urinary sucralose for use in tests of intestinal permeability. Ann Clin Biochem. 2005 May;42(Pt 3):224-6. [PubMed:15949159 ]
  8. Whaley DN, Wiggs LS, Miller PH, Srivastava PU, Miller JM: Use of Presumpto Plates to identify anaerobic bacteria. J Clin Microbiol. 1995 May;33(5):1196-202. [PubMed:7615728 ]
  9. Chia JS, Lin YL, Lien HT, Chen JY: Platelet aggregation induced by serotype polysaccharides from Streptococcus mutans. Infect Immun. 2004 May;72(5):2605-17. [PubMed:15102769 ]
  10. Hosono M, Sugawara S, Ogawa Y, Kohno T, Takayanagi M, Nitta K: Purification, characterization, cDNA cloning, and expression of asialofetuin-binding C-type lectin from eggs of shishamo smelt (Osmerus [Spirinchus] lanceolatus). Biochim Biophys Acta. 2005 Sep 15;1725(2):160-73. [PubMed:16112459 ]
  11. Bjarnason I, Smethurst P, Macpherson A, Walker F, McElnay JC, Passmore AP, Menzies IS: Glucose and citrate reduce the permeability changes caused by indomethacin in humans. Gastroenterology. 1992 May;102(5):1546-50. [PubMed:1568563 ]