Record Information |
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Version | 2.0 |
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Created at | 2009-01-29 15:21:03 UTC |
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Updated at | 2021-06-30 02:06:18 UTC |
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NP-MRD ID | NP0001095 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | 7-Methyladenine |
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Description | 7-Methyladenine is part of the base excision repair pathway. In this pathway, alkylated DNA is hydrolysed via the enzyme DNA-3-methyladenine glycosylase II (EC 3.2.2.21), Releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine. This enzyme is responsible for the hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, and 7-methylguanine from the damaged DNA polymer formed by alkylation lesions. Base excision repair (BER) is a cellular mechanism that repairs damaged DNA throughout the cell cycle. Repairing DNA sequence errors is necessary so that mutations are not propagated or to remove lesions that may lead to breaks in the DNA during replication. Single bases in DNA can be chemically mutated, for example by deamination or alkylation, resulting in incorrect base-pairing, and consequently, mutations in the DNA. Base excision repair involves flipping the mutated base out of the DNA helix and repairing the base alone. There are two main enzymes used, DNA glycosylases and AP endonucleases. The DNA glycosylase is used to break the beta-N glycosidic bond to create an AP site. AP endonuclease recognizes this site and nicks the damaged DNA on the 5' side (upstream) of the AP site creating a free 3'-OH. DNA polymerase, Pol I (human pol beta), extends the DNA from the free 3'-OH using its exonuclease activity to replace the nucleotide of the damaged base, as well as a few downstream, followed by sealing of the new DNA strand by DNA ligase. In mammalian cells, this is done by LigIII in complex with the scaffold protein XRCC1. Usually, BER is divided into short-patch repair (where a single nucleotide is replaced) or long-patch repair (where 2-10 nucleotides are replaced). Mammalian long-patch repair includes PCNA and pol delta/epsilon for nucleotide resynthesis, FEN1 to cut of the 'flap' including the damaged base, and LigI. |
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Structure | InChI=1S/C6H7N5/c1-11-3-10-6-4(11)5(7)8-2-9-6/h2-3H,1H3,(H2,7,8,9) |
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Synonyms | Value | Source |
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6-Amino-7-methylpurine | HMDB | 7-Methyl-7H-purin-6-amine | HMDB | 7-Methyl-7H-purin-6-amine (acd/name 4.0) | HMDB | 7-Methyl-7H-purin-6-ylamine (acd/name 4.0) | HMDB | 7-Methyl-N7-methyladenine | HMDB | 7-Methyladenine | ChEMBL, HMDB |
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Chemical Formula | C6H7N5 |
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Average Mass | 149.1533 Da |
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Monoisotopic Mass | 149.07015 Da |
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IUPAC Name | 7-methyl-7H-purin-6-amine |
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Traditional Name | 7-methyladenine |
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CAS Registry Number | 935-69-3 |
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SMILES | CN1C=NC2=NC=NC(N)=C12 |
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InChI Identifier | InChI=1S/C6H7N5/c1-11-3-10-6-4(11)5(7)8-2-9-6/h2-3H,1H3,(H2,7,8,9) |
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InChI Key | HCGHYQLFMPXSDU-UHFFFAOYSA-N |
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Experimental Spectra |
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| Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, simulated) | V.dorna83 | | | 2021-09-05 | View Spectrum | 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Predicted Spectra |
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| Not Available | Chemical Shift Submissions |
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| Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, simulated) | varshavi.d26@gmail.com | Not Available | Not Available | 2021-07-27 | View Spectrum |
| Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as 6-aminopurines. These are purines that carry an amino group at position 6. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring. |
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Kingdom | Organic compounds |
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Super Class | Organoheterocyclic compounds |
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Class | Imidazopyrimidines |
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Sub Class | Purines and purine derivatives |
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Direct Parent | 6-aminopurines |
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Alternative Parents | |
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Substituents | - 6-aminopurine
- Aminopyrimidine
- N-substituted imidazole
- Pyrimidine
- Imidolactam
- Azole
- Imidazole
- Heteroaromatic compound
- Azacycle
- Organonitrogen compound
- Hydrocarbon derivative
- Amine
- Organic nitrogen compound
- Primary amine
- Organopnictogen compound
- Aromatic heteropolycyclic compound
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Molecular Framework | Aromatic heteropolycyclic compounds |
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External Descriptors | |
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Physical Properties |
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State | Solid |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Harroun SG, Zhang Y, Chen TH, Ku CR, Chang HT: Biomarkers of cigarette smoking and DNA methylating agents: Raman, SERS and DFT study of 3-methyladenine and 7-methyladenine. Spectrochim Acta A Mol Biomol Spectrosc. 2017 Apr 5;176:1-7. doi: 10.1016/j.saa.2016.12.012. Epub 2016 Dec 15. [PubMed:28061366 ]
- Michelson AZ, Chen M, Wang K, Lee JK: Gas-phase studies of purine 3-methyladenine DNA glycosylase II (AlkA) substrates. J Am Chem Soc. 2012 Jun 13;134(23):9622-33. doi: 10.1021/ja211960r. Epub 2012 May 31. [PubMed:22554094 ]
- Tokuda S, Fukuda T, Kobayashi Y, Tanaka M, Matsui T: Effect of the uncharged imidazolium moiety in adenine on endothelium-independent relaxation in the contracted thoracic aorta of Sprague-Dawley rats. Biosci Biotechnol Biochem. 2012;76(4):828-30. doi: 10.1271/bbb.110806. Epub 2012 Apr 7. [PubMed:22484931 ]
- von Kugelgen I, Schiedel AC, Hoffmann K, Alsdorf BB, Abdelrahman A, Muller CE: Cloning and functional expression of a novel Gi protein-coupled receptor for adenine from mouse brain. Mol Pharmacol. 2008 Feb;73(2):469-77. doi: 10.1124/mol.107.037069. Epub 2007 Nov 1. [PubMed:17975009 ]
- Gorzalka S, Vittori S, Volpini R, Cristalli G, von Kugelgen I, Muller CE: Evidence for the functional expression and pharmacological characterization of adenine receptors in native cells and tissues. Mol Pharmacol. 2005 Mar;67(3):955-64. doi: 10.1124/mol.104.006601. Epub 2004 Dec 16. [PubMed:15604413 ]
- Cohen B, Hare PM, Kohler B: Ultrafast excited-state dynamics of adenine and monomethylated adenines in solution: implications for the nonradiative decay mechanism. J Am Chem Soc. 2003 Nov 5;125(44):13594-601. doi: 10.1021/ja035628z. [PubMed:14583057 ]
- Birkeland NK, Anensen H, Knaevelsrud I, Kristoffersen W, Bjoras M, Robb FT, Klungland A, Bjelland S: Methylpurine DNA glycosylase of the hyperthermophilic archaeon Archaeoglobus fulgidus. Biochemistry. 2002 Oct 22;41(42):12697-705. doi: 10.1021/bi020334w. [PubMed:12379112 ]
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