NP-MRD: Showing NP-Card for Bipoladisin F (NP0350753)

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Record Information

Version

2.0

Created at

2025-02-25 21:27:15 UTC

Updated at

2025-03-21 01:03:15 UTC

NP-MRD ID

NP0350753

Natural Product DOI

https://doi.org/10.57994/3737

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bipoladisin F

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05252321342D          

 30 32  0  0  1  0            999 V2000
    7.4128    3.7407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6406    4.0310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5059    4.8449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1434    5.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0088    6.1824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6463    6.7061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4185    6.4157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5116    7.5200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1491    8.0436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7394    7.8103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0031    3.5074    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1377    2.6934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5002    2.1698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6349    1.3559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4488    1.4906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8210    1.2212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9557    0.4073    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4217   -0.2735    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7696    0.5420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0429    2.0158    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1946    1.7581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3697    1.7668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7321    1.2432    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3272    1.9620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5803    0.4323    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9539    0.9692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9852   -0.2865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7575   -0.5768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5357   -0.3028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0593   -0.9404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
  2 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 14 13  1  1  0  0  0
 14 15  1  6  0  0  0
 16 14  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 14 19  1  0  0  0  0
 16 20  1  1  0  0  0
 16 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 23 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 17 29  1  0  0  0  0
 29 30  2  0  0  0  0
M  END


  Mrv2104 05252321342D          

 30 32  0  0  1  0            999 V2000
    7.4128    3.7407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6406    4.0310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5059    4.8449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1434    5.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0088    6.1824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6463    6.7061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4185    6.4157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5116    7.5200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1491    8.0436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7394    7.8103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0031    3.5074    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1377    2.6934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5002    2.1698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6349    1.3559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4488    1.4906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8210    1.2212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9557    0.4073    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4217   -0.2735    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7696    0.5420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0429    2.0158    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1946    1.7581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3697    1.7668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7321    1.2432    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3272    1.9620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5803    0.4323    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9539    0.9692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9852   -0.2865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7575   -0.5768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5357   -0.3028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0593   -0.9404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
  2 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 14 13  1  1  0  0  0
 14 15  1  6  0  0  0
 16 14  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 14 19  1  0  0  0  0
 16 20  1  1  0  0  0
 16 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 23 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 17 29  1  0  0  0  0
 29 30  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0350753

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]12C[C@](C)(CC\C=C(/C)CC\C=C(/C)C(O)=O)[C@@]1([H])CC[C@]1(C)O[C@H]1CCC2=C

> <INCHI_IDENTIFIER>
InChI=1S/C25H38O3/c1-17(8-6-10-19(3)23(26)27)9-7-14-24(4)16-20-18(2)11-12-22-25(5,28-22)15-13-21(20)24/h9-10,20-22H,2,6-8,11-16H2,1,3-5H3,(H,26,27)/b17-9+,19-10+/t20-,21-,22-,24-,25-/m0/s1

> <INCHI_KEY>
RRJHBQJHURMREI-DSHBNQGSSA-N

> <FORMULA>
C25H38O3

> <MOLECULAR_WEIGHT>
386.576

> <EXACT_MASS>
386.282095084

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
46.70344052591476

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,6E)-9-[(1S,4S,6S,10R,12S)-4,12-dimethyl-9-methylidene-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-12-yl]-2,6-dimethylnona-2,6-dienoic acid

> <JCHEM_LOGP>
6.129649032333335

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.812140918308046

> <JCHEM_PKA_STRONGEST_BASIC>
-4.224447800328911

> <JCHEM_POLAR_SURFACE_AREA>
49.83

> <JCHEM_REFRACTIVITY>
115.53529999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2E,6E)-9-[(1S,4S,6S,10R,12S)-4,12-dimethyl-9-methylidene-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-12-yl]-2,6-dimethylnona-2,6-dienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-MAY-23         0                                  
HETATM    1  C   UNK     0      13.837   6.983   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.396   7.524   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.144   9.044   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      13.334  10.021   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      13.083  11.541   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.273  12.518   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      15.715  11.976   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.022  14.037   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      15.212  15.015   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      12.580  14.579   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      11.206   6.547   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.457   5.028   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.267   4.050   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.518   2.531   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.038   2.782   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.999   2.280   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.251   0.760   0.000  0.00  0.00           C+0
HETATM   18  H   UNK     0      10.121  -0.511   0.000  0.00  0.00           H+0
HETATM   19  C   UNK     0      10.770   1.012   0.000  0.00  0.00           C+0
HETATM   20  H   UNK     0       9.413   3.763   0.000  0.00  0.00           H+0
HETATM   21  C   UNK     0       7.830   3.282   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.290   3.298   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.100   2.321   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.344   3.662   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.817   0.807   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       3.647   1.809   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       5.572  -0.535   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.014  -1.077   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.467  -0.565   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.444  -1.755   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    2   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16   19                                             
CONECT   15   14                                                            
CONECT   16   14   17   20   21                                             
CONECT   17   16   18   19   29                                             
CONECT   18   17                                                            
CONECT   19   17   14                                                       
CONECT   20   16                                                            
CONECT   21   16   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25   26                                             
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25   23                                                       
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   17   30                                                  
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₈O₃

Average Mass

386.5760 Da

Monoisotopic Mass

386.28210 Da

IUPAC Name

(2E,6E)-9-[(1S,4S,6S,10R,12S)-4,12-dimethyl-9-methylidene-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-12-yl]-2,6-dimethylnona-2,6-dienoic acid

Traditional Name

(2E,6E)-9-[(1S,4S,6S,10R,12S)-4,12-dimethyl-9-methylidene-5-oxatricyclo[8.2.0.0^{4,6}]dodecan-12-yl]-2,6-dimethylnona-2,6-dienoic acid

CAS Registry Number

Not Available

SMILES

[H][C@@]12C[C@](C)(CC\C=C(/C)CC\C=C(/C)C(O)=O)[C@@]1([H])CC[C@]1(C)O[C@H]1CCC2=C

InChI Identifier

InChI=1S/C25H38O3/c1-17(8-6-10-19(3)23(26)27)9-7-14-24(4)16-20-18(2)11-12-22-25(5,28-22)15-13-21(20)24/h9-10,20-22H,2,6-8,11-16H2,1,3-5H3,(H,26,27)/b17-9+,19-10+/t20-,21-,22-,24-,25-/m0/s1

InChI Key

RRJHBQJHURMREI-DSHBNQGSSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400.13 MHz, CDCl₃, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 400.13, CDCl₃, simulated)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Bipolaris maydis		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.13	ChemAxon
pKa (Strongest Acidic)	4.81	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	49.83 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	115.54 m³·mol⁻¹	ChemAxon
Polarizability	46.7 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Bipoladisin F (NP0350753)

MOL for NP0350753 (Bipoladisin F)

3D MOL for NP0350753 (Bipoladisin F)

3D SDF for NP0350753 (Bipoladisin F)

3D-SDF for NP0350753 (Bipoladisin F)

PDB for NP0350753 (Bipoladisin F)

3D PDB for NP0350753 (Bipoladisin F)

SMILES for NP0350753 (Bipoladisin F)

INCHI for NP0350753 (Bipoladisin F)

Structure for NP0350753 (Bipoladisin F)

3D Structure for NP0350753 (Bipoladisin F)