NP-MRD: Showing NP-Card for 4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol (NP0339706)

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Record Information

Version

2.0

Created at

2024-09-11 23:09:18 UTC

Updated at

2024-09-11 23:09:18 UTC

NP-MRD ID

NP0339706

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol

Description

Based on a literature review very few articles have been published on 4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05272301412D          

 31 34  0  0  0  0            999 V2000
   -0.9747   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2602   -7.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4542   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1687   -7.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8832   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5977   -7.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3121   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0658   -7.1799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3207   -6.3953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1277   -6.2238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6798   -6.8369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4867   -6.6654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7417   -5.8807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5486   -5.7092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1007   -6.3223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8457   -7.1069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0388   -7.2785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7838   -8.0631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9768   -8.2346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4248   -7.6215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178   -7.7930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2053   -8.5075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3984   -8.3360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3978   -7.7200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2047   -7.5485    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9076   -6.1508    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9347   -6.0523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4527   -6.6279    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5977   -6.2780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4542   -8.3405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2602   -6.2780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  7 23  1  0  0  0  0
  8 21  1  0  0  0  0
 11 20  1  0  0  0  0
 16 24  1  0  0  0  0
 24 25  1  0  0  0  0
 15 26  1  0  0  0  0
 12 27  1  0  0  0  0
  8 28  1  0  0  0  0
  6 29  1  0  0  0  0
  3 30  2  0  0  0  0
  2 31  1  0  0  0  0
M  END


  Mrv2104 05272301412D          

 31 34  0  0  0  0            999 V2000
   -0.9747   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2602   -7.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4542   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1687   -7.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8832   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5977   -7.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3121   -7.5155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0658   -7.1799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3207   -6.3953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1277   -6.2238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6798   -6.8369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4867   -6.6654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7417   -5.8807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5486   -5.7092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1007   -6.3223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8457   -7.1069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0388   -7.2785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7838   -8.0631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9768   -8.2346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4248   -7.6215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178   -7.7930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2053   -8.5075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3984   -8.3360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3978   -7.7200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2047   -7.5485    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9076   -6.1508    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9347   -6.0523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4527   -6.6279    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5977   -6.2780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4542   -8.3405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2602   -6.2780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  7 23  1  0  0  0  0
  8 21  1  0  0  0  0
 11 20  1  0  0  0  0
 16 24  1  0  0  0  0
 24 25  1  0  0  0  0
 15 26  1  0  0  0  0
 12 27  1  0  0  0  0
  8 28  1  0  0  0  0
  6 29  1  0  0  0  0
  3 30  2  0  0  0  0
  2 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0339706

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C(=C)CCC(C)C1CCC2C3=CCC4C(CO)C(O)CCC4(C)C3CCC12C

> <INCHI_IDENTIFIER>
InChI=1/C29H48O2/c1-18(2)19(3)7-8-20(4)23-11-12-24-21-9-10-25-22(17-30)27(31)14-16-29(25,6)26(21)13-15-28(23,24)5/h9,18,20,22-27,30-31H,3,7-8,10-17H2,1-2,4-6H3

> <INCHI_KEY>
QFGCPIMZVWPNNF-UHFFFAOYNA-N

> <FORMULA>
C29H48O2

> <MOLECULAR_WEIGHT>
428.701

> <EXACT_MASS>
428.365430786

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
53.156862674094384

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-(hydroxymethyl)-9a,11a-dimethyl-1-(6-methyl-5-methylideneheptan-2-yl)-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-7-ol

> <JCHEM_LOGP>
6.022113252666669

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.593826992516943

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.75125554684179

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6325873579931205

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
131.24409999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
6-(hydroxymethyl)-9a,11a-dimethyl-1-(6-methyl-5-methylideneheptan-2-yl)-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9bH,10H,11H-cyclopenta[a]phenanthren-7-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-23         0                                  
HETATM    1  C   UNK     0      -1.819 -14.029   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.486 -13.259   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.848 -14.029   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.182 -13.259   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.515 -14.029   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.849 -13.259   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.183 -14.029   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.590 -13.403   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.065 -11.938   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.572 -11.618   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.602 -12.762   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.109 -12.442   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      12.584 -10.977   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.091 -10.657   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      15.121 -11.802   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      14.645 -13.266   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.139 -13.586   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.663 -15.051   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.157 -15.371   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.126 -14.227   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.620 -14.547   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.850 -15.881   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.344 -15.560   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      15.676 -14.411   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      17.182 -14.091   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      16.628 -11.481   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      11.078 -11.298   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.445 -12.372   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.849 -11.719   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.848 -15.569   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -0.486 -11.719   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   31                                                  
CONECT    3    2    4   30                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   29                                                  
CONECT    7    6    8   23                                                  
CONECT    8    7    9   21   28                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   20                                                  
CONECT   12   11   13   17   27                                             
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   26                                                  
CONECT   16   15   17   24                                                  
CONECT   17   16   12   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   11                                                  
CONECT   21   20   22    8                                                  
CONECT   22   21   23                                                       
CONECT   23   22    7                                                       
CONECT   24   16   25                                                       
CONECT   25   24                                                            
CONECT   26   15                                                            
CONECT   27   12                                                            
CONECT   28    8                                                            
CONECT   29    6                                                            
CONECT   30    3                                                            
CONECT   31    2                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₄₈O₂

Average Mass

428.7010 Da

Monoisotopic Mass

428.36543 Da

IUPAC Name

6-(hydroxymethyl)-9a,11a-dimethyl-1-(6-methyl-5-methylideneheptan-2-yl)-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-7-ol

Traditional Name

6-(hydroxymethyl)-9a,11a-dimethyl-1-(6-methyl-5-methylideneheptan-2-yl)-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9bH,10H,11H-cyclopenta[a]phenanthren-7-ol

CAS Registry Number

Not Available

SMILES

CC(C)C(=C)CCC(C)C1CCC2C3=CCC4C(CO)C(O)CCC4(C)C3CCC12C

InChI Identifier

InChI=1/C29H48O2/c1-18(2)19(3)7-8-20(4)23-11-12-24-21-9-10-25-22(17-30)27(31)14-16-29(25,6)26(21)13-15-28(23,24)5/h9,18,20,22-27,30-31H,3,7-8,10-17H2,1-2,4-6H3

InChI Key

QFGCPIMZVWPNNF-UHFFFAOYNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.02	ChemAxon
pKa (Strongest Acidic)	14.75	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	131.24 m³·mol⁻¹	ChemAxon
Polarizability	53.16 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol (NP0339706)

MOL for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

3D MOL for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

3D SDF for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

3D-SDF for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

PDB for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

3D PDB for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

SMILES for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

INCHI for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

Structure for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)

3D Structure for NP0339706 (4α-hydroxymethyl-ergosta-7,24(241)-dien-3β-ol)