Np mrd loader

Record Information
Version2.0
Created at2023-12-21 12:00:42 UTC
Updated at2024-09-03 04:18:38 UTC
NP-MRD IDNP0332265
Natural Product DOIhttps://doi.org/10.57994/1460
Secondary Accession NumbersNone
Natural Product Identification
Common NameCompound 6
DescriptionCompound 6 belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively. Compound 6 was first documented in 2024 (PMID: 39303767). Based on a literature review a small amount of articles have been published on Compound 6 (PMID: 39269321) (PMID: 39253381) (PMID: 39241481) (PMID: 39222351).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC25H32O8
Average Mass460.5230 Da
Monoisotopic Mass460.20972 Da
IUPAC Name[(2R,3S,4R)-4-[(S)-(3,4-dimethoxyphenyl)(hydroxy)methyl]-2-(4-ethoxy-3-methoxyphenyl)oxolan-3-yl]methyl acetate
Traditional Name[(2R,3S,4R)-4-[(S)-(3,4-dimethoxyphenyl)(hydroxy)methyl]-2-(4-ethoxy-3-methoxyphenyl)oxolan-3-yl]methyl acetate
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CO[C@@H](C2=CC(OC)=C(OCC)C=C2)[C@]1([H])COC(C)=O)[C@H](O)C1=CC=C(OC)C(OC)=C1
InChI Identifier
InChI=1S/C25H32O8/c1-6-31-21-10-8-17(12-23(21)30-5)25-19(14-32-15(2)26)18(13-33-25)24(27)16-7-9-20(28-3)22(11-16)29-4/h7-12,18-19,24-25,27H,6,13-14H2,1-5H3/t18-,19+,24+,25-/m0/s1
InChI KeyAYXXOFWTSSWURZ-MKTUGGFXSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMRProton NMR Spectrum (1D, 600 MHz, CDCL3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMRCarbon13 NMR Spectrum (1D, 151 MHz, CDCL3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCL3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, CDCL3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassFuranoid lignans
Sub ClassTetrahydrofuran lignans
Direct Parent7,9'-epoxylignans
Alternative Parents
Substituents
  • 7,9p-epoxylignan
  • Fatty alcohol ester
  • Phenoxy compound
  • Methoxybenzene
  • Phenol ether
  • Anisole
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Tetrahydrofuran
  • Secondary alcohol
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aromatic alcohol
  • Organooxygen compound
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.21ChemAxon
pKa (Strongest Acidic)14.09ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area92.68 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity121.48 m³·mol⁻¹ChemAxon
Polarizability49.83 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Matundura JO, Mollel JT, Miah M, Said J, Omosa LK, Kalenga TM, Woordes YT, Nchiozem-Ngnitedem VA, Orthaber A, Midiwo JO, Herrebout W, Trybala E, Bergstrom T, Ticona LA, Erdelyi M, Yenesew A: Bioactive Abietenolide Diterpenes from Suregada procera. Fitoterapia. 2024 Sep 18:106217. doi: 10.1016/j.fitote.2024.106217. [PubMed:39303767 ]
  2. Huang XR, Jiang CN, Wang HS, Gu G, Wang M, Sui XN, Si T, Zhang ZF, Zhang P, Zhao DL: Herbicidal Sorbicillinoid Analogs Cause Lignin Accumulation in Aspergillus aculeatus TE-65L. J Agric Food Chem. 2024 Sep 25;72(38):21102-21111. doi: 10.1021/acs.jafc.4c06809. Epub 2024 Sep 13. [PubMed:39269321 ]
  3. Fan PC, Chiou LC, Lai TH, Sharmin D, Cook J, Lee MT: The deuterated pyrazoloquinolinone targeting alpha6 subunit-containing GABA(A) receptor as novel candidate for inhibition of trigeminovascular system activation: implication for migraine therapy. Front Pharmacol. 2024 Aug 26;15:1451634. doi: 10.3389/fphar.2024.1451634. eCollection 2024. [PubMed:39253381 ]
  4. Tang DW, Chen IC, Chou PY, Lai MJ, Liu ZY, Tsai KK, Cheng LH, Zhao JX, Cho EC, Chang HH, Lin TE, Hsu KC, Chen MC, Liou JP: HSP90/LSD1 dual inhibitors against prostate cancer as well as patient-derived colorectal organoids. Eur J Med Chem. 2024 Nov 15;278:116801. doi: 10.1016/j.ejmech.2024.116801. Epub 2024 Aug 28. [PubMed:39241481 ]
  5. Schmidt M, Gilmer J, Virovets A, Bolte M, Lerner HW, Wagner M: Adjusting the Number of Functional Groups in Vicinal Bis(trichlorosilylated) Benzenes. Chemistry. 2024 Sep 2:e202402998. doi: 10.1002/chem.202402998. [PubMed:39222351 ]