Np mrd loader

Record Information
Version2.0
Created at2022-09-12 16:59:56 UTC
Updated at2022-09-12 16:59:56 UTC
NP-MRD IDNP0331045
Secondary Accession NumbersNone
Natural Product Identification
Common Namecembrane
DescriptionCembrane belongs to the class of organic compounds known as cembrane diterpenoids. These are diterpenoids with a structure based a cembrane skeleton, which is characterized by the presence of an isopropyl group at C-1 and by three symmetrically disposed methyl groups a the t C-4, -8 and -12 positions. cembrane was first documented in 2020 (PMID: 32980673). Based on a literature review a significant number of articles have been published on cembrane (PMID: 34569875) (PMID: 36029845) (PMID: 35944737) (PMID: 35243948) (PMID: 35048750) (PMID: 34794314).
Structure
Thumb
Synonyms
ValueSource
Cembrane IMeSH
Chemical FormulaC20H40
Average Mass280.5400 Da
Monoisotopic Mass280.31300 Da
IUPAC Name1,7,11-trimethyl-4-(propan-2-yl)cyclotetradecane
Traditional Namecembrane
CAS Registry NumberNot Available
SMILES
CC(C)C1CCC(C)CCCC(C)CCCC(C)CC1
InChI Identifier
InChI=1S/C20H40/c1-16(2)20-14-12-18(4)10-6-8-17(3)9-7-11-19(5)13-15-20/h16-20H,6-15H2,1-5H3
InChI KeyLHORCXXUZJAMPU-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cembrane diterpenoids. These are diterpenoids with a structure based a cembrane skeleton, which is characterized by the presence of an isopropyl group at C-1 and by three symmetrically disposed methyl groups a the t C-4, -8 and -12 positions.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassDiterpenoids
Direct ParentCembrane diterpenoids
Alternative Parents
Substituents
  • Cembrane diterpenoid
  • Cycloalkane
  • Saturated hydrocarbon
  • Hydrocarbon
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP8.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity91.76 m³·mol⁻¹ChemAxon
Polarizability38.31 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00036941
Chemspider ID14935
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15702
PDB IDNot Available
ChEBI ID60689
Good Scents IDNot Available
References
General References
  1. Ren L, Leng X, Li T, Liu J, Wang W, Yan X, Yan X, He S: Four new cembranoids from the South China Sea soft coral Sarcophyton trocheliophorum. Nat Prod Res. 2021 Sep 27:1-8. doi: 10.1080/14786419.2021.1948041. [PubMed:34569875 ]
  2. Wang X, Qian L, Qiao Y, Jin X, Zhou J, Yuan S, Zhang J, Zhang C, Lou H: Cembrane-type diterpenoids from the Chinese liverwort Chandonanthus birmensis. Phytochemistry. 2022 Aug 24;203:113376. doi: 10.1016/j.phytochem.2022.113376. [PubMed:36029845 ]
  3. Zhao H, Sun L, Kong C, Mei W, Dai H, Xu F, Huang S: Phytochemical and pharmacological review of diterpenoids from the genus Euphorbia Linn (2012-2021). J Ethnopharmacol. 2022 Nov 15;298:115574. doi: 10.1016/j.jep.2022.115574. Epub 2022 Aug 6. [PubMed:35944737 ]
  4. Hussain H, Rashan L, Hassan U, Abbas M, Hakkim FL, Green IR: Frankincense diterpenes as a bio-source for drug discovery. Expert Opin Drug Discov. 2022 May;17(5):513-529. doi: 10.1080/17460441.2022.2044782. Epub 2022 Mar 4. [PubMed:35243948 ]
  5. Lin N, Wang H, Guo YW: Iso-ximaonanolobatin G, a minor new cembrane-type diterpenoid from the South China Sea soft coral Sinularia nanolobata. J Asian Nat Prod Res. 2022 Jun;24(6):589-595. doi: 10.1080/10286020.2021.2024519. Epub 2022 Jan 20. [PubMed:35048750 ]
  6. Liu YY, Yan YM, Wang DW, Cheng YX: Populusene A, an Anti-inflammatory Diterpenoid with a Bicyclo[8,4,1]pentadecane Scaffold from Populus euphratica Resins. Org Lett. 2021 Nov 19;23(22):8657-8661. doi: 10.1021/acs.orglett.1c02378. Epub 2021 Aug 15. [PubMed:34794314 ]
  7. Chen JC, Dai YZ, Tzeng YM, Liao JW: Genotoxicity and 28-day repeated dose oral toxicity study of ovatodiolide in rats. Toxicol Rep. 2021 Oct 11;8:1783-1791. doi: 10.1016/j.toxrep.2021.10.010. eCollection 2021. [PubMed:34722163 ]
  8. Forero AM, Castellanos L, Sandoval-Hernandez AG, Magalhaes A, Tinoco LW, Lopez-Vallejo F, Ramos FA: Integration of NMR studies, computational predictions, and in vitro assays in the search of marine diterpenes with antitumor activity. Chem Biol Drug Des. 2021 Oct;98(4):507-521. doi: 10.1111/cbdd.13907. Epub 2021 Jul 23. [PubMed:34143939 ]
  9. Shen SM, Li WS, Ding X, Luo H, Zhang HY, Guo YW: Ximaoglaucumins A - F, new cembranoids with anti-inflammatory activities from the South China Sea soft coral Sarcophyton glaucum. Bioorg Med Chem. 2021 May 15;38:116139. doi: 10.1016/j.bmc.2021.116139. Epub 2021 Apr 2. [PubMed:33857736 ]
  10. Wu MJ, Wang H, Jiang CS, Guo YW: New cembrane-type diterpenoids from the South China Sea soft coral Sinularia crassa and their alpha-glucosidase inhibitory activity. Bioorg Chem. 2020 Nov;104:104281. doi: 10.1016/j.bioorg.2020.104281. Epub 2020 Sep 17. [PubMed:32980673 ]
  11. LOTUS database [Link]