NP-MRD: Showing NP-Card for (2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (NP0296599)

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Record Information

Version

2.0

Created at

2022-09-10 06:16:41 UTC

Updated at

2022-09-10 06:16:41 UTC

NP-MRD ID

NP0296599

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol

Description

Icariside D1 belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol is found in Atractylodes japonica, Bupleurum falcatum, Helichrysum arenarium, Punica granatum and Tinospora sinensis. (2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol was first documented in 2004 (PMID: 15620261). Based on a literature review very few articles have been published on Icariside D1.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102208162D          

 29 31  0  0  1  0            999 V2000
    3.8694   -4.7898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1244   -5.5744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0203   -5.5744    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2398   -6.6724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9849   -7.4570    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1599   -7.4570    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6749   -8.1245    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0105   -8.8782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5256   -9.5456    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8611  -10.2993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3762  -10.9667    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7118  -11.7204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2268  -12.3878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5624  -13.1415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0775  -13.8089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4130  -14.5626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9281  -15.2301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1076  -15.1438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7721  -14.3901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2570  -13.7227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5557  -10.8805    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0708  -11.5479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2202  -10.1268    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3997  -10.0406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7051   -9.4594    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3695   -8.7057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9049   -6.6724    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1203   -6.4175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 12 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  1  6  0  0  0
  7 28  1  0  0  0  0
  3 28  1  0  0  0  0
 28 29  1  6  0  0  0
M  END

     RDKit          3D

 57 59  0  0  0  0  0  0  0  0999 V2000
    5.8833    3.4604    0.6705 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3640    2.8456   -0.4780 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4053    1.3544   -0.2386 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6875    0.9179   -0.0180 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4818    1.0011    0.9092 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2362    1.0347    0.2868 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4238    0.1423   -0.7950 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3539    0.3021   -1.6365 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5450   -0.7880   -1.8083 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8936   -1.3035   -0.5523 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0918   -0.4066    0.0772 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1808   -0.7933    0.3909 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0775   -0.6688   -0.6645 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1028    0.2175   -0.4542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9962   -0.1253    0.7164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0602    0.9038    0.8359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2731    0.7914    0.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2521    1.7631    0.3166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0039    2.8636    1.1030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7963    2.9850    1.7504 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8093    2.0023    1.6223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2968   -2.1687    0.9836 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2226   -2.1061    2.3798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2929   -3.1452    0.4431 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7772   -4.4263    0.3196 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1693   -2.5867   -0.9068 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0188   -3.4867   -1.5459 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7252    0.6329   -1.3934 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5617   -0.4344   -1.7400 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7615    3.8550    0.4566 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9487    3.0890   -1.3734 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2917    3.1287   -0.5706 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9254    0.0736   -0.4725 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6604   -0.0545    1.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5293    1.7123    1.7375 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5265   -0.8531   -0.3399 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1750   -1.6330   -2.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8051   -0.5662   -2.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7022   -1.6022    0.1624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5410   -0.0890    1.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7644    0.1398   -1.3664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7680    1.2701   -0.3655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5280   -1.0949    0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4938   -0.2096    1.6762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4798   -0.0563   -0.4217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1899    1.6513   -0.1967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7524    3.6340    1.2154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5692    3.8359    2.3751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8761    2.1172    2.1354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3088   -2.5531    0.7403 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7600   -2.8541    2.7429 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042   -3.0945    1.0995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3093   -4.8556   -0.4379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7434   -2.3885   -1.5044 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7979   -3.4584   -2.5073 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5573    1.3346   -2.2250 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0995   -1.2569   -1.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  1
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 12 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
  7 28  1  0
 28 29  1  0
 28  3  1  0
 26 10  1  0
 21 16  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  4 33  1  0
  5 34  1  0
  5 35  1  0
  7 36  1  1
  9 37  1  0
  9 38  1  0
 10 39  1  1
 12 40  1  1
 14 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 17 45  1  0
 18 46  1  0
 19 47  1  0
 20 48  1  0
 21 49  1  0
 22 50  1  1
 23 51  1  0
 24 52  1  1
 25 53  1  0
 26 54  1  6
 27 55  1  0
 28 56  1  6
 29 57  1  0
M  END


  Mrv1652309102208162D          

 29 31  0  0  1  0            999 V2000
    3.8694   -4.7898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1244   -5.5744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0203   -5.5744    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2398   -6.6724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9849   -7.4570    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1599   -7.4570    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6749   -8.1245    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0105   -8.8782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5256   -9.5456    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8611  -10.2993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3762  -10.9667    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7118  -11.7204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2268  -12.3878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5624  -13.1415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0775  -13.8089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4130  -14.5626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9281  -15.2301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1076  -15.1438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7721  -14.3901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2570  -13.7227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5557  -10.8805    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0708  -11.5479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2202  -10.1268    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3997  -10.0406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7051   -9.4594    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3695   -8.7057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9049   -6.6724    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1203   -6.4175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 12 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  1  6  0  0  0
  7 28  1  0  0  0  0
  3 28  1  0  0  0  0
 28 29  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0296599

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@@]1(O)CO[C@@H](OC[C@H]2O[C@@H](OCCC3=CC=CC=C3)[C@H](O)[C@@H](O)[C@@H]2O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C19H28O10/c20-9-19(25)10-28-18(16(19)24)27-8-12-13(21)14(22)15(23)17(29-12)26-7-6-11-4-2-1-3-5-11/h1-5,12-18,20-25H,6-10H2/t12-,13-,14+,15-,16+,17-,18-,19-/m1/s1

> <INCHI_KEY>
GZSQKOFXMZDKPV-OTCFHACESA-N

> <FORMULA>
C19H28O10

> <MOLECULAR_WEIGHT>
416.423

> <EXACT_MASS>
416.168247102

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
41.54061550894849

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S,5R,6R)-2-({[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol

> <JCHEM_LOGP>
-1.5527774520000004

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.318486073980544

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.705149140598072

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1423790163389214

> <JCHEM_POLAR_SURFACE_AREA>
158.3

> <JCHEM_REFRACTIVITY>
96.71240000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4S,5R,6R)-2-({[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  O   UNK     0       7.223  -8.941   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.699 -10.406   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.668 -11.550   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.638 -10.406   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       7.914 -12.455   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       7.438 -13.920   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       5.898 -13.920   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.993 -15.166   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       5.620 -16.573   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.714 -17.818   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.341 -19.225   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.436 -20.471   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       5.062 -21.878   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.157 -23.124   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.783 -24.531   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.878 -25.777   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.504 -27.184   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.599 -28.429   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.068 -28.268   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.441 -26.862   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.346 -25.616   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.904 -20.310   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.999 -21.556   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.278 -18.903   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.746 -18.742   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.183 -17.657   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       2.556 -16.251   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       5.423 -12.455   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       3.958 -11.979   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   28                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   28                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   26                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   22                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16                                                       
CONECT   22   12   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   10   27                                                  
CONECT   27   26                                                            
CONECT   28    7    3   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₈O₁₀

Average Mass

416.4230 Da

Monoisotopic Mass

416.16825 Da

IUPAC Name

(2R,3S,4S,5R,6R)-2-({[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol

Traditional Name

(2R,3S,4S,5R,6R)-2-({[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

OC[C@@]1(O)CO[C@@H](OC[C@H]2O[C@@H](OCCC3=CC=CC=C3)[C@H](O)[C@@H](O)[C@@H]2O)[C@@H]1O

InChI Identifier

InChI=1S/C19H28O10/c20-9-19(25)10-28-18(16(19)24)27-8-12-13(21)14(22)15(23)17(29-12)26-7-6-11-4-2-1-3-5-11/h1-5,12-18,20-25H,6-10H2/t12-,13-,14+,15-,16+,17-,18-,19-/m1/s1

InChI Key

GZSQKOFXMZDKPV-OTCFHACESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Atractylodes japonica	LOTUS Database	35616633
Bupleurum falcatum	LOTUS Database	35616633
Helichrysum arenarium	LOTUS Database	35616633
Punica granatum	LOTUS Database	35616633
Tinospora sinensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

Disaccharide
O-glycosyl compound
Monocyclic benzene moiety
Oxane
Benzenoid
Oxolane
Tertiary alcohol
Secondary alcohol
Polyol
Oxacycle
Acetal
Organoheterocyclic compound
Primary alcohol
Alcohol
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.6	ChemAxon
pKa (Strongest Acidic)	11.71	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	158.3 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	96.71 m³·mol⁻¹	ChemAxon
Polarizability	41.54 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00031876

Chemspider ID

10283070

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13893575

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang RF, Xie WD, Zhang Z, Xing DM, Ding Y, Wang W, Ma C, Du LJ: Bioactive compounds from the seeds of Punica granatum (pomegranate). J Nat Prod. 2004 Dec;67(12):2096-8. doi: 10.1021/np0498051. [PubMed:15620261 ]
LOTUS database [Link]

Showing NP-Card for (2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (NP0296599)

MOL for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

3D MOL for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

3D SDF for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

3D-SDF for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

PDB for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

3D PDB for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

SMILES for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

INCHI for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

Structure for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)

3D Structure for NP0296599 ((2r,3s,4s,5r,6r)-2-({[(2r,3r,4r)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-6-(2-phenylethoxy)oxane-3,4,5-triol)