NP-MRD: Showing NP-Card for (2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one (NP0296508)

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Record Information

Version

2.0

Created at

2022-09-10 06:07:46 UTC

Updated at

2022-09-10 06:07:46 UTC

NP-MRD ID

NP0296508

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one

Description

Bipolarin E belongs to the class of organic compounds known as ophiobolane sesterterpenoids. These are sesterterpnoids with a structure based on the ophiobolane backbone. Ophiobolane is a tricyclic compound consisting of two cyclopentane rings joined by a cyclooctane ring, and carries a methyl group at the 1-, 4-, and 8-position, as well as a 6-methylheptane group at the 12-position. Based on a literature review very few articles have been published on Bipolarin E.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102208072D          

 29 32  0  0  1  0            999 V2000
    0.4627   -2.5248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9910   -3.1585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8039   -3.0179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0886   -2.2435    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6295   -1.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1395   -0.9096    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9146   -0.1159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9138   -1.1943    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9453   -0.3699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390   -0.1451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1982   -0.8305    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5427   -0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0173   -0.7326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6658   -1.2426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7637   -2.0618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5730   -2.2218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9193   -2.9707    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9753   -1.5016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4146   -0.8964    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.5747   -0.0871    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2537   -2.7103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6576   -3.4296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2366   -4.1391    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4345   -2.8082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7860   -2.2981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6881   -1.4790    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8824   -2.0187    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7063   -3.9328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2346   -4.5665    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  6  0  0  0
 15 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  2  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  1  0  0  0
  8 26  1  0  0  0  0
 11 26  1  0  0  0  0
  8 27  1  6  0  0  0
  4 27  1  0  0  0  0
  2 28  1  0  0  0  0
 28 29  1  0  0  0  0
M  END

     RDKit          3D

 65 68  0  0  0  0  0  0  0  0999 V2000
    5.8223   -0.3984    0.4440 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0302    0.8416    0.5824 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8103    0.8675    0.0875 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1411   -0.2546   -0.6111 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8845   -1.3906    0.3063 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6219   -2.0113   -0.3108 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2055   -2.9965   -1.3378 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0043   -0.8610   -0.9884 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3394   -1.3413   -2.2584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8883   -2.0156   -1.7023 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3779   -1.1208   -0.5650 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8522   -1.9693    0.5462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5762   -0.3767   -1.1454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3766    0.3492   -0.1854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1480    1.4206    0.5944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3742    2.1549    0.7722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4942    3.2898    1.2694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4711    1.2724    0.2362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7882   -0.0526    0.1147 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3761   -0.9374   -0.9341 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9360    1.9396    1.2541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1305    3.2977    1.8767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8818    3.6294    2.4512 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7014    1.4701    1.4231 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0273    0.2396    1.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2149   -0.2492   -0.3118 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9586    0.1147   -1.2176 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5694    2.0621    1.2620 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6100    3.0865    1.2479 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6132   -0.8475   -0.5401 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6650   -1.0975    1.2752 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9037   -0.0732    0.3828 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2435    1.8014    0.2037 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8091   -0.6162   -1.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7486   -2.1140    0.2646 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7689   -1.1624    1.3662 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0265   -2.5324    0.4380 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7746   -2.4371   -2.0928 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9850   -3.5656   -0.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5062   -3.7340   -1.6968 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9300   -2.0282   -2.8523 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0055   -0.4342   -2.8047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7399   -3.0246   -1.3238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6152   -2.0898   -2.5361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9384   -2.2507    0.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7928   -1.5537    1.5516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3283   -2.9591    0.5783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2032    0.1690   -2.0223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2305   -1.1970   -1.5689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8115    1.6176   -0.7629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3127    1.2166    0.9685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8453   -0.5543    1.1194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4758   -0.9665   -0.7652 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1292   -0.5271   -1.9333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9973   -1.9637   -0.7846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3306    4.0846    1.1580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7986    3.2520    2.7634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5784    4.5189    2.2199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1145    2.1956    1.9818 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1205    0.5328    1.1085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0991   -0.4772    1.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4010    0.6786   -0.9442 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5221    2.3606    0.7917 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7657    1.8377    2.3305 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9170    3.8798    1.7408 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 18  1  0
 18 16  1  0
 16 17  2  0
 16 15  1  0
 15 14  2  0
 14 13  1  0
 13 11  1  0
 11 12  1  1
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 10  9  1  0
  9  8  1  0
  8 27  1  6
 27  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  2 28  1  0
 28 29  1  0
  8 26  1  0
 26 25  1  0
 25 24  1  0
 24 21  2  0
 21 22  1  0
 22 23  1  0
 14 19  1  0
 26 11  1  0
 21 15  1  0
  6  8  1  0
 20 53  1  0
 20 54  1  0
 20 55  1  0
 19 52  1  1
 18 50  1  0
 18 51  1  0
 13 48  1  0
 13 49  1  0
 12 45  1  0
 12 46  1  0
 12 47  1  0
 10 43  1  0
 10 44  1  0
  9 41  1  0
  9 42  1  0
  4 34  1  6
  5 35  1  0
  5 36  1  0
  6 37  1  1
  7 38  1  0
  7 39  1  0
  7 40  1  0
  3 33  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
 28 63  1  0
 28 64  1  0
 29 65  1  0
 26 62  1  6
 25 60  1  0
 25 61  1  0
 24 59  1  0
 22 56  1  0
 22 57  1  0
 23 58  1  0
M  END


  Mrv1652309102208072D          

 29 32  0  0  1  0            999 V2000
    0.4627   -2.5248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9910   -3.1585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8039   -3.0179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0886   -2.2435    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6295   -1.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1395   -0.9096    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9146   -0.1159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9138   -1.1943    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9453   -0.3699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7390   -0.1451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1982   -0.8305    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5427   -0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0173   -0.7326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6658   -1.2426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7637   -2.0618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5730   -2.2218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9193   -2.9707    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9753   -1.5016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4146   -0.8964    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.5747   -0.0871    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2537   -2.7103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6576   -3.4296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2366   -4.1391    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4345   -2.8082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7860   -2.2981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6881   -1.4790    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8824   -2.0187    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7063   -3.9328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2346   -4.5665    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  6  0  0  0
 15 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  2  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  1  0  0  0
  8 26  1  0  0  0  0
 11 26  1  0  0  0  0
  8 27  1  6  0  0  0
  4 27  1  0  0  0  0
  2 28  1  0  0  0  0
 28 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0296508

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC(=O)C2=C1C[C@@]1(C)CC[C@@]3(O[C@H](C[C@@H]3C)\C=C(/C)CO)[C@@H]1C\C=C2\CO

> <INCHI_IDENTIFIER>
InChI=1S/C25H36O4/c1-15(13-26)9-19-11-17(3)25(29-19)8-7-24(4)12-20-16(2)10-21(28)23(20)18(14-27)5-6-22(24)25/h5,9,16-17,19,22,26-27H,6-8,10-14H2,1-4H3/b15-9+,18-5-/t16-,17+,19+,22-,24-,25+/m1/s1

> <INCHI_KEY>
WXYLJWPCXKPYHP-FVCZJGEXSA-N

> <FORMULA>
C25H36O4

> <MOLECULAR_WEIGHT>
400.559

> <EXACT_MASS>
400.261359639

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
46.743148244297124

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3S,3'R,5R,7'R,9'E,14'R)-5-[(1E)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0^{3,7}]tetradecane]-1'(11'),9'-dien-12'-one

> <JCHEM_LOGP>
2.9066679536666657

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.42158859913415

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.816538090282819

> <JCHEM_PKA_STRONGEST_BASIC>
-2.730949456135508

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
116.88259999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S,3'R,5R,7'R,9'E,14'R)-5-[(1E)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0^{3,7}]tetradecane]-1'(11'),9'-dien-12'-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       0.864  -4.713   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.850  -5.896   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.367  -5.633   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.899  -4.188   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.042  -2.908   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.994  -1.698   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.574  -0.216   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.439  -2.229   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.498  -0.690   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.980  -0.271   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.837  -1.550   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.480  -0.151   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.366  -1.368   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.576  -2.320   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.759  -3.849   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.270  -4.147   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      12.916  -5.545   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      13.021  -2.803   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.974  -1.673   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.273  -0.163   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.807  -5.059   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.561  -6.402   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.775  -7.726   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.278  -5.242   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.067  -4.290   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.885  -2.761   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       5.380  -3.768   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.318  -7.341   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       2.305  -8.524   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   28                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   27                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   26   27                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13   26                                             
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16   21                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   14   20                                                  
CONECT   20   19                                                            
CONECT   21   15   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25    8   11                                                  
CONECT   27    8    4                                                       
CONECT   28    2   29                                                       
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₆O₄

Average Mass

400.5590 Da

Monoisotopic Mass

400.26136 Da

IUPAC Name

(2S,3S,3'R,5R,7'R,9'E,14'R)-5-[(1E)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0^{3,7}]tetradecane]-1'(11'),9'-dien-12'-one

Traditional Name

(2S,3S,3'R,5R,7'R,9'E,14'R)-5-[(1E)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0^{3,7}]tetradecane]-1'(11'),9'-dien-12'-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC(=O)C2=C1C[C@@]1(C)CC[C@@]3(O[C@H](C[C@@H]3C)\C=C(/C)CO)[C@@H]1C\C=C2\CO

InChI Identifier

InChI=1S/C25H36O4/c1-15(13-26)9-19-11-17(3)25(29-19)8-7-24(4)12-20-16(2)10-21(28)23(20)18(14-27)5-6-22(24)25/h5,9,16-17,19,22,26-27H,6-8,10-14H2,1-4H3/b15-9+,18-5-/t16-,17+,19+,22-,24-,25+/m1/s1

InChI Key

WXYLJWPCXKPYHP-FVCZJGEXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ophiobolane sesterterpenoids. These are sesterterpnoids with a structure based on the ophiobolane backbone. Ophiobolane is a tricyclic compound consisting of two cyclopentane rings joined by a cyclooctane ring, and carries a methyl group at the 1-, 4-, and 8-position, as well as a 6-methylheptane group at the 12-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesterterpenoids

Direct Parent

Ophiobolane sesterterpenoids

Alternative Parents

Substituents

Ophiobolane sesterterpenoid
Tetrahydrofuran
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.91	ChemAxon
pKa (Strongest Acidic)	14.82	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	116.88 m³·mol⁻¹	ChemAxon
Polarizability	46.74 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146683603

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one (NP0296508)

MOL for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

3D MOL for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

3D SDF for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

3D-SDF for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

PDB for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

3D PDB for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

SMILES for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

INCHI for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

Structure for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)

3D Structure for NP0296508 ((2s,3s,3'r,5r,7'r,9'e,14'r)-5-[(1e)-3-hydroxy-2-methylprop-1-en-1-yl]-10'-(hydroxymethyl)-3,3',14'-trimethylspiro[oxolane-2,6'-tricyclo[9.3.0.0³,⁷]tetradecane]-1'(11'),9'-dien-12'-one)