NP-MRD: Showing NP-Card for (2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid (NP0296486)

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Record Information

Version

2.0

Created at

2022-09-10 06:05:25 UTC

Updated at

2022-09-10 06:05:25 UTC

NP-MRD ID

NP0296486

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid

Description

(2E,6R)-N-[(3S,7S,10S)-3-[(2S)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. (2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid is found in Streptomyces eurythermus. Based on a literature review very few articles have been published on (2E,6R)-N-[(3S,7S,10S)-3-[(2S)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102208052D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309102208052D          

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 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 16 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  4  0  0  0
 31 32  2  0  0  0  0
  5 32  1  0  0  0  0
 32 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0296486

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)CC\C=C\C(O)=N[C@H]1CCCN=C(O)[C@@H](NC(=O)C(=O)[C@H](C)N=C1O)[C@@H](C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C24H40N4O5/c1-6-15(3)11-8-9-13-19(29)27-18-12-10-14-25-23(32)20(16(4)7-2)28-24(33)21(30)17(5)26-22(18)31/h9,13,15-18,20H,6-8,10-12,14H2,1-5H3,(H,25,32)(H,26,31)(H,27,29)(H,28,33)/b13-9+/t15-,16+,17+,18+,20+/m1/s1

> <INCHI_KEY>
VABXDMBWWDFQRS-COIIMPPYSA-N

> <FORMULA>
C24H40N4O5

> <MOLECULAR_WEIGHT>
464.607

> <EXACT_MASS>
464.299870404

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
50.51045077745121

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,6R)-N-[(3S,7S,10S)-3-[(2S)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid

> <JCHEM_LOGP>
1.203225553339917

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
2.0511767189387706

> <JCHEM_PKA_STRONGEST_ACIDIC>
-3.914186278855774

> <JCHEM_PKA_STRONGEST_BASIC>
15.206973045392633

> <JCHEM_POLAR_SURFACE_AREA>
143.94

> <JCHEM_REFRACTIVITY>
127.8287

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E,6R)-N-[(3S,7S,10S)-3-[(2S)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.808  -0.849   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.382  -0.266   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.165  -1.209   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.373  -2.735   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.261  -0.626   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       0.230   0.518   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       1.000   1.852   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.374   3.259   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.506   1.532   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.714   0.006   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.034   3.850   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       5.335   1.540   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       8.002  -0.000   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       9.336  -2.310   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      10.669  -0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      12.003  -0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      13.337  -0.000   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      14.670  -0.770   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      16.004  -0.000   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      16.004   1.540   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.338  -0.770   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      18.672  -0.000   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0       2.667  -3.080   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.017  -3.109   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   32                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   28                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26                                                            
CONECT   28   16   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31    5   33                                                  
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   66    0
END

View in JSmol

Synonyms

Value	Source
(2E,6R)-N-[(3S,7S,10S)-3-[(2S)-Butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidate	Generator

Chemical Formula

C₂₄H₄₀N₄O₅

Average Mass

464.6070 Da

Monoisotopic Mass

464.29987 Da

IUPAC Name

(2E,6R)-N-[(3S,7S,10S)-3-[(2S)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid

Traditional Name

(2E,6R)-N-[(3S,7S,10S)-3-[(2S)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)CC\C=C\C(O)=N[C@H]1CCCN=C(O)[C@@H](NC(=O)C(=O)[C@H](C)N=C1O)[C@@H](C)CC

InChI Identifier

InChI=1S/C24H40N4O5/c1-6-15(3)11-8-9-13-19(29)27-18-12-10-14-25-23(32)20(16(4)7-2)28-24(33)21(30)17(5)26-22(18)31/h9,13,15-18,20H,6-8,10-12,14H2,1-5H3,(H,25,32)(H,26,31)(H,27,29)(H,28,33)/b13-9+/t15-,16+,17+,18+,20+/m1/s1

InChI Key

VABXDMBWWDFQRS-COIIMPPYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces eurythermus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolactams

Sub Class

Not Available

Direct Parent

Macrolactams

Alternative Parents

Substituents

Macrolactam
Cyclic carboximidic acid
Cyclic ketone
Secondary carboxylic acid amide
Lactam
Ketone
Carboxamide group
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboxylic acid derivative
Carboximidic acid derivative
Carboximidic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.2	ChemAxon
pKa (Strongest Acidic)	-3.9	ChemAxon
pKa (Strongest Basic)	15.21	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	143.94 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	127.83 m³·mol⁻¹	ChemAxon
Polarizability	50.51 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163106260

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid (NP0296486)

MOL for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

3D MOL for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

3D SDF for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

3D-SDF for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

PDB for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

3D PDB for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

SMILES for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

INCHI for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

Structure for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)

3D Structure for NP0296486 ((2e,6r)-n-[(3s,7s,10s)-3-[(2s)-butan-2-yl]-2,9-dihydroxy-7-methyl-5,6-dioxo-1,4,8-triazacyclotrideca-1,8-dien-10-yl]-6-methyloct-2-enimidic acid)