NP-MRD: Showing NP-Card for methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate (NP0289137)

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Record Information

Version

2.0

Created at

2022-09-09 19:11:18 UTC

Updated at

2022-09-09 19:11:19 UTC

NP-MRD ID

NP0289137

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate

Description

Methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate belongs to the class of organic compounds known as clavulones and derivatives. These are ester derivatives of prostanoids. methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate is found in Clavularia viridis. Based on a literature review very few articles have been published on methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092221112D          

 26 26  0  0  1  0            999 V2000
    4.8745   -6.2696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1209   -5.9341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0346   -5.1136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2810   -4.7780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1947   -3.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4410   -3.6220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3548   -2.8015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6011   -2.4660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5149   -1.6455    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3399   -1.6455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7079   -1.8170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2954   -1.1025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5251   -1.0163    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
    0.8475   -0.4894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6759    0.3175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6011   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3156   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3156    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0301    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7445    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4590    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1735    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8880    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8880    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6024    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3169    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  1  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END

     RDKit          3D

 55 55  0  0  0  0  0  0  0  0999 V2000
   -8.0802   -0.1838   -0.4903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8158    0.6047   -0.4194 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5624   -0.2083   -0.6578 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3763   -1.3050    0.3218 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1706   -2.1447    0.1945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8599   -1.5499    0.4078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5576   -0.3206    0.7774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1374    0.1379    0.9481 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8456    1.2845    0.0065 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0531    0.7754   -1.2834 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7175    2.4311    0.1951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0305    3.5351    0.3858 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7892    5.4908    0.7096 I   0  0  0  0  0  0  0  0  0  0  0  0
    0.4146    3.2393    0.3602 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3261    4.1202    0.5170 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5236    1.8152    0.1309 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6597    1.1090    0.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9272    1.7309    0.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0523    1.0503    0.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0918   -0.3813   -0.1214 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7720   -1.1466    0.9967 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1927   -0.7500    1.2262 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0961   -0.9334    0.0881 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0556   -0.2432   -0.9580 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0687   -1.9221    0.1361 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9910   -2.1886   -0.9000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9067    0.5645   -0.6799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3642   -0.6589    0.4784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1215   -0.8757   -1.3563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8521    1.3844   -1.2112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7934    1.1292    0.5467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7229    0.4713   -0.7715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6462   -0.7050   -1.6846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3719   -0.8679    1.3681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2577   -2.0044    0.3601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3284   -3.0404    0.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1947   -2.5968   -0.8442 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9931   -2.2262    0.2328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3808    0.3533    0.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4956   -0.7136    0.6432 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9015    0.3694    2.0043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8796    1.1156   -1.6958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8214    2.4792    0.1978 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5451    0.0541   -0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0251    2.8233    0.3647 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0061    1.6123    0.2244 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1691   -0.8925   -0.3713 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7669   -0.5711   -1.0232 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2020   -1.1228    1.9296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7562   -2.2233    0.6671 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5986   -1.2980    2.1263 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2275    0.3320    1.5479 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8767   -1.5512   -0.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2823   -3.2704   -0.7560 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4010   -2.1174   -1.8503 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  6
  9 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  1  0
 16  9  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
 10 42  1  0
 11 43  1  0
 17 44  1  0
 18 45  1  0
 19 46  1  0
 20 47  1  0
 20 48  1  0
 21 49  1  0
 21 50  1  0
 22 51  1  0
 22 52  1  0
 26 53  1  0
 26 54  1  0
 26 55  1  0
M  END


  Mrv1652309092221112D          

 26 26  0  0  1  0            999 V2000
    4.8745   -6.2696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1209   -5.9341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0346   -5.1136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2810   -4.7780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1947   -3.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4410   -3.6220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3548   -2.8015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6011   -2.4660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5149   -1.6455    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3399   -1.6455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7079   -1.8170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2954   -1.1025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5251   -1.0163    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
    0.8475   -0.4894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6759    0.3175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6011   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3156   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3156    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0301    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7445    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4590    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1735    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8880    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8880    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6024    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3169    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  1  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0289137

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC\C=C\C[C@@]1(O)C=C(I)C(=O)\C1=C/C=C\CCCC(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C21H29IO4/c1-3-4-5-6-9-12-15-21(25)16-18(22)20(24)17(21)13-10-7-8-11-14-19(23)26-2/h7,9-10,12-13,16,25H,3-6,8,11,14-15H2,1-2H3/b10-7-,12-9+,17-13+/t21-/m1/s1

> <INCHI_KEY>
WBVIHDHLOOPYQN-PSSUFDINSA-N

> <FORMULA>
C21H29IO4

> <MOLECULAR_WEIGHT>
472.363

> <EXACT_MASS>
472.11105

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
46.98462909648936

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate

> <JCHEM_LOGP>
5.313503600999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.42601262259538

> <JCHEM_PKA_STRONGEST_BASIC>
-3.487262078876781

> <JCHEM_POLAR_SURFACE_AREA>
63.599999999999994

> <JCHEM_REFRACTIVITY>
117.9425

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       9.099 -11.703   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.692 -11.077   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.531  -9.545   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.124  -8.919   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.963  -7.387   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.557  -6.761   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.396  -5.230   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.989  -4.603   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.828  -3.072   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       4.368  -3.072   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       1.321  -3.392   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.551  -2.058   0.000  0.00  0.00           C+0
HETATM   13  I   UNK     0      -0.980  -1.897   0.000  0.00  0.00           I+0
HETATM   14  C   UNK     0       1.582  -0.914   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       1.262   0.593   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.989  -1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.322  -0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.322   0.770   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.656   1.540   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.990   0.770   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.323   1.540   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.657   0.770   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.991   1.540   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      10.991   3.080   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      12.325   0.770   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      13.658   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11   16                                             
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    9   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

View in JSmol

Synonyms

Value	Source
Methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoic acid	Generator

Chemical Formula

C₂₁H₂₉IO₄

Average Mass

472.3630 Da

Monoisotopic Mass

472.11105 Da

IUPAC Name

methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate

Traditional Name

methyl (5Z)-7-[(1Z,2R)-2-hydroxy-4-iodo-2-[(2E)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate

CAS Registry Number

Not Available

SMILES

CCCCC\C=C\C[C@@]1(O)C=C(I)C(=O)\C1=C/C=C\CCCC(=O)OC

InChI Identifier

InChI=1S/C21H29IO4/c1-3-4-5-6-9-12-15-21(25)16-18(22)20(24)17(21)13-10-7-8-11-14-19(23)26-2/h7,9-10,12-13,16,25H,3-6,8,11,14-15H2,1-2H3/b10-7-,12-9+,17-13+/t21-/m1/s1

InChI Key

WBVIHDHLOOPYQN-PSSUFDINSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clavularia viridis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as clavulones and derivatives. These are ester derivatives of prostanoids.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Clavulones and derivatives

Alternative Parents

Substituents

Clavulone
Fatty acid methyl ester
Fatty acid ester
Alpha-haloketone
Methyl ester
Tertiary alcohol
Cyclic ketone
Ketone
Carboxylic acid ester
Iodoalkene
Haloalkene
Vinyl iodide
Vinyl halide
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organoiodide
Organohalogen compound
Carbonyl group
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.31	ChemAxon
pKa (Strongest Acidic)	13.43	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	117.94 m³·mol⁻¹	ChemAxon
Polarizability	46.98 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163189927

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate (NP0289137)

MOL for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

3D MOL for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

3D SDF for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

3D-SDF for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

PDB for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

3D PDB for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

SMILES for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

INCHI for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

Structure for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)

3D Structure for NP0289137 (methyl (5z)-7-[(1z,2r)-2-hydroxy-4-iodo-2-[(2e)-oct-2-en-1-yl]-5-oxocyclopent-3-en-1-ylidene]hept-5-enoate)