NP-MRD: Showing NP-Card for (1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione (NP0273174)

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Record Information

Version

2.0

Created at

2022-09-08 20:07:39 UTC

Updated at

2022-09-08 20:07:39 UTC

NP-MRD ID

NP0273174

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione

Description

(1R,5R,7E,9R,12S,13E,15S,17S)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3E)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]Nonadeca-7,13-diene-3,11-dione belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. Based on a literature review very few articles have been published on (1R,5R,7E,9R,12S,13E,15S,17S)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3E)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]Nonadeca-7,13-diene-3,11-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082222072D          

 34 35  0  0  1  0            999 V2000
    5.6585    6.7005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5548    5.8820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6904    4.7442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3473    4.2451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2436    3.4266    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9005    2.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7968    2.1091    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4538    1.6101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  6 33  1  0  0  0  0
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 23 34  1  6  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309082222072D          

 34 35  0  0  1  0            999 V2000
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 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
  6 33  1  0  0  0  0
 28 34  1  0  0  0  0
 23 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0273174

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C\CC[C@@H]1C\C=C(C)\[C@@H](O)C(C)(C)C(=O)[C@@H](C)\C=C(C)\[C@@H]2C[C@H](O)C[C@](O)(CC(=O)O1)O2

> <INCHI_IDENTIFIER>
InChI=1S/C27H42O7/c1-7-8-9-10-21-12-11-17(2)24(30)26(5,6)25(31)19(4)13-18(3)22-14-20(28)15-27(32,34-22)16-23(29)33-21/h7-8,11,13,19-22,24,28,30,32H,9-10,12,14-16H2,1-6H3/b8-7+,17-11+,18-13+/t19-,20-,21+,22-,24+,27+/m0/s1

> <INCHI_KEY>
SLWJHRCOUPNNFJ-UJYAUNKESA-N

> <FORMULA>
C27H42O7

> <MOLECULAR_WEIGHT>
478.626

> <EXACT_MASS>
478.293053692

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
52.89254279892782

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,5R,7E,9R,12S,13E,15S,17S)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3E)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione

> <JCHEM_LOGP>
4.179004704666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.942489590716033

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.69608011621405

> <JCHEM_PKA_STRONGEST_BASIC>
-2.80298052429285

> <JCHEM_POLAR_SURFACE_AREA>
113.29000000000002

> <JCHEM_REFRACTIVITY>
132.5905

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5R,7E,9R,12S,13E,15S,17S)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3E)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      10.563  12.508   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.369  10.980   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.949  10.384   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.755   8.856   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.982   7.924   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.788   6.396   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.014   5.465   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.821   3.937   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.047   3.005   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.467   3.602   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.853   1.478   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      13.080   0.546   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      10.433   0.881   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.904   0.426   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.267  -0.413   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.240  -0.646   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      11.466  -1.578   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       8.820  -1.242   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.626  -2.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.594  -0.311   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.787   1.217   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.207   1.813   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.561   2.148   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.141   1.552   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.915   2.484   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       2.495   1.888   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.108   4.012   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.528   4.608   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       4.302   5.539   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       5.722   6.136   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       7.142   6.732   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       7.335   8.260   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       8.368   5.800   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0       6.755   3.676   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   33                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   34                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   30   34                                             
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31    6                                                       
CONECT   34   28   23                                                       
MASTER        0    0    0    0    0    0    0    0   34    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₂O₇

Average Mass

478.6260 Da

Monoisotopic Mass

478.29305 Da

IUPAC Name

(1R,5R,7E,9R,12S,13E,15S,17S)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3E)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione

Traditional Name

(1R,5R,7E,9R,12S,13E,15S,17S)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3E)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione

CAS Registry Number

Not Available

SMILES

C\C=C\CC[C@@H]1C\C=C(C)\[C@@H](O)C(C)(C)C(=O)[C@@H](C)\C=C(C)\[C@@H]2C[C@H](O)C[C@](O)(CC(=O)O1)O2

InChI Identifier

InChI=1S/C27H42O7/c1-7-8-9-10-21-12-11-17(2)24(30)26(5,6)25(31)19(4)13-18(3)22-14-20(28)15-27(32,34-22)16-23(29)33-21/h7-8,11,13,19-22,24,28,30,32H,9-10,12,14-16H2,1-6H3/b8-7+,17-11+,18-13+/t19-,20-,21+,22-,24+,27+/m0/s1

InChI Key

SLWJHRCOUPNNFJ-UJYAUNKESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolides and analogues

Sub Class

Not Available

Direct Parent

Macrolides and analogues

Alternative Parents

Substituents

Macrolide
Oxane
Carboxylic acid ester
Hemiacetal
Ketone
Lactone
Secondary alcohol
Cyclic ketone
Monocarboxylic acid or derivatives
Polyol
Carboxylic acid derivative
Organoheterocyclic compound
Oxacycle
Organic oxide
Organooxygen compound
Organic oxygen compound
Carbonyl group
Aldehyde
Alcohol
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.18	ChemAxon
pKa (Strongest Acidic)	11.7	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	132.59 m³·mol⁻¹	ChemAxon
Polarizability	52.89 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10001567

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11826917

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione (NP0273174)

MOL for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

3D MOL for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

3D SDF for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

3D-SDF for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

PDB for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

3D PDB for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

SMILES for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

INCHI for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

Structure for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)

3D Structure for NP0273174 ((1r,5r,7e,9r,12s,13e,15s,17s)-1,9,17-trihydroxy-8,10,10,12,14-pentamethyl-5-[(3e)-pent-3-en-1-yl]-4,19-dioxabicyclo[13.3.1]nonadeca-7,13-diene-3,11-dione)