NP-MRD: Showing NP-Card for Deoxygerfelin (NP0138418)

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Record Information

Version

1.0

Created at

2022-06-29 17:28:35 UTC

Updated at

2022-06-29 17:28:36 UTC

NP-MRD ID

NP0138418

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Deoxygerfelin

Description

It was first documented in 2010 (PMID: 20174687). Based on a literature review a significant number of articles have been published on 3-Isopaynantheine N-oxide (PMID: 36153150) (PMID: 36153149) (PMID: 36153148) (PMID: 36153147).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309282217262D          

 31 34  0  0  1  0            999 V2000
    6.3618   -0.4187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9909    0.3182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1672    0.3654    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7145   -0.3244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7962    1.1022    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2489    1.7920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8779    2.5288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3305    3.2186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9595    3.9554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0542    2.5760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0725    1.7448    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4435    1.0079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2672    0.9608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9726    1.1494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5199    0.4596    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8909   -0.2772    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.2619   -1.0141    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.4382   -0.9670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6146   -0.9198    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1489    1.1965    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6962    0.5068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2436   -0.1829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4477    0.0344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7537   -0.4116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7929   -1.2356    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5262   -1.6137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0204   -0.0335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0188    0.7906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6753    1.2366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4085    0.8585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1801    1.1504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7 10  2  0  0  0  0
  6 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  5 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  4 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 15 20  1  6  0  0  0
 15 21  1  0  0  0  0
 21 22  2  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 24 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  0  0  0  0
 21 31  1  0  0  0  0
M  CHG  2  16   1  17  -1
M  END


  Mrv1652309282217262D          

 31 34  0  0  1  0            999 V2000
    6.3618   -0.4187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9909    0.3182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1672    0.3654    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7145   -0.3244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7962    1.1022    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2489    1.7920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8779    2.5288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3305    3.2186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9595    3.9554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0542    2.5760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0725    1.7448    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4435    1.0079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2672    0.9608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9726    1.1494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5199    0.4596    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8909   -0.2772    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.2619   -1.0141    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.4382   -0.9670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6146   -0.9198    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1489    1.1965    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6962    0.5068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2436   -0.1829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4477    0.0344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7537   -0.4116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7929   -1.2356    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5262   -1.6137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0204   -0.0335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0188    0.7906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6753    1.2366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4085    0.8585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1801    1.1504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7 10  2  0  0  0  0
  6 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  5 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  4 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 15 20  1  6  0  0  0
 15 21  1  0  0  0  0
 21 22  2  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 24 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  0  0  0  0
 21 31  1  0  0  0  0
M  CHG  2  16   1  17  -1
M  END
> <DATABASE_ID>
NP0138418

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12C[C@@H]([C@H](C[N+]1([O-])CCC1=C2NC2=CC=CC(OC)=C12)C=C)C(=C/OC)\C(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C23H28N2O5/c1-5-14-12-25(27)10-9-15-21-18(7-6-8-20(21)29-3)24-22(15)19(25)11-16(14)17(13-28-2)23(26)30-4/h5-8,13-14,16,19,24H,1,9-12H2,2-4H3/b17-13+/t14-,16-,19+,25?/m0/s1

> <INCHI_KEY>
OJKYJWDFFASHGX-YOOCQZJISA-N

> <FORMULA>
C23H28N2O5

> <MOLECULAR_WEIGHT>
412.486

> <EXACT_MASS>
412.19982201

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
44.82290542129026

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,12bR)-2-[(1E)-1,3-dimethoxy-3-oxoprop-1-en-2-yl]-3-ethenyl-8-methoxy-1H,2H,3H,4H,5H,6H,7H,12H,12bH-indolo[2,3-a]quinolizin-5-ium-5-olate

> <ALOGPS_LOGP>
1.94

> <JCHEM_LOGP>
1.8712304170000014

> <ALOGPS_LOGS>
-5.26

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.249883653862959

> <JCHEM_PKA_STRONGEST_BASIC>
3.1767762628126963

> <JCHEM_POLAR_SURFACE_AREA>
83.61000000000001

> <JCHEM_REFRACTIVITY>
115.00220000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.29e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,12bR)-2-[(1E)-1,3-dimethoxy-3-oxoprop-1-en-2-yl]-3-ethenyl-8-methoxy-1H,2H,3H,4H,6H,7H,12H,12bH-indolo[2,3-a]quinolizin-5-ium-5-olate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-SEP-22         0                                  
HETATM    1  C   UNK     0      11.875  -0.782   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.183   0.594   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.645   0.682   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.800  -0.606   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.953   2.057   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.798   3.345   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.105   4.720   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       9.950   6.008   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       9.258   7.383   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.568   4.809   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      11.335   3.257   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      12.028   1.881   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      13.565   1.793   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.415   2.146   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.570   0.858   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       7.263  -0.517   0.000  0.00  0.00           N+1
HETATM   17  O   UNK     0       7.956  -1.893   0.000  0.00  0.00           O-1
HETATM   18  C   UNK     0       6.418  -1.805   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.881  -1.717   0.000  0.00  0.00           C+0
HETATM   20  H   UNK     0       5.878   2.234   0.000  0.00  0.00           H+0
HETATM   21  C   UNK     0       5.033   0.946   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.188  -0.341   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.702   0.064   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.407  -0.768   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       1.480  -2.307   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.849  -3.012   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.038  -0.063   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.035   1.476   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.260   2.308   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.629   1.603   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0       4.070   2.147   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3   16                                                       
CONECT    5    3    6   14                                                  
CONECT    6    5    7   11                                                  
CONECT    7    6    8   10                                                  
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    7                                                            
CONECT   11    6   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14    5   15                                                       
CONECT   15   14   16   20   21                                             
CONECT   16   15    4   17   18                                             
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   22                                                       
CONECT   20   15                                                            
CONECT   21   15   22   31                                                  
CONECT   22   21   19   23                                                  
CONECT   23   22   24   30                                                  
CONECT   24   23   25   27                                                  
CONECT   25   24   26                                                       
CONECT   26   25                                                            
CONECT   27   24   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   23   31                                                  
CONECT   31   30   21                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₄O₅

Average Mass

274.2720 Da

Monoisotopic Mass

274.08412 Da

IUPAC Name

(2S,3R,12bR)-2-[(1E)-1,3-dimethoxy-3-oxoprop-1-en-2-yl]-3-ethenyl-8-methoxy-1H,2H,3H,4H,5H,6H,7H,12H,12bH-indolo[2,3-a]quinolizin-5-ium-5-olate

Traditional Name

(2S,3R,12bR)-2-[(1E)-1,3-dimethoxy-3-oxoprop-1-en-2-yl]-3-ethenyl-8-methoxy-1H,2H,3H,4H,6H,7H,12H,12bH-indolo[2,3-a]quinolizin-5-ium-5-olate

CAS Registry Number

36149-01-6

SMILES

CC1=CC(O)=CC(OC2=CC(C)=C(C(O)=O)C(O)=C2)=C1

InChI Identifier

InChI=1S/C15H14O5/c1-8-3-10(16)6-11(4-8)20-12-5-9(2)14(15(18)19)13(17)7-12/h3-7,16-17H,1-2H3,(H,18,19)

InChI Key

ZJEIMBOWRAUNAN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.94	ALOGPS
logP	1.87	ChemAxon
logS	-5.3	ALOGPS
pKa (Strongest Acidic)	14.25	ChemAxon
pKa (Strongest Basic)	3.18	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	83.61 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	115 m³·mol⁻¹	ChemAxon
Polarizability	44.82 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102497654

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sanchez JF, Chiang YM, Szewczyk E, Davidson AD, Ahuja M, Elizabeth Oakley C, Woo Bok J, Keller N, Oakley BR, Wang CC: Molecular genetic analysis of the orsellinic acid/F9775 gene cluster of Aspergillus nidulans. Mol Biosyst. 2010 Mar;6(3):587-93. doi: 10.1039/b904541d. Epub 2009 Dec 16. [PubMed:20174687 ]
Goddard C, Collopy KT, Powers Iv WF: Prehospital Hypertonic Saline Administration After Severe Traumatic Brain Injury. Air Med J. 2022 Sep-Oct;41(5):498-502. doi: 10.1016/j.amj.2022.04.004. Epub 2022 May 31. [PubMed:36153150 ]
Lai J, Kuttab H, Newberry R, Stader M, Cathers A: Prehospital Ultrasound Use to Guide Resuscitative Thoracotomy in Blunt Traumatic Cardiac Arrest. Air Med J. 2022 Sep-Oct;41(5):494-497. doi: 10.1016/j.amj.2022.06.003. Epub 2022 Jul 2. [PubMed:36153149 ]
Foorman B, Utarnachitt RB, Danielson K, Brookie T, Henry L, Latimer A: Prolonged Use of an Extraglottic Airway During Air Medical Transport From a Remote Alaskan Island. Air Med J. 2022 Sep-Oct;41(5):491-493. doi: 10.1016/j.amj.2022.06.004. Epub 2022 Jul 15. [PubMed:36153148 ]
Campbell A, Ascenzi J, Busch DW: An Integrative Review Regarding Knowledge and Self-Competency of Pediatric and Neonatal Critical Care Transport Nurses. Air Med J. 2022 Sep-Oct;41(5):484-490. doi: 10.1016/j.amj.2022.06.006. Epub 2022 Jul 31. [PubMed:36153147 ]

Showing NP-Card for Deoxygerfelin (NP0138418)

MOL for NP0138418 (Deoxygerfelin)

3D MOL for NP0138418 (Deoxygerfelin)

3D SDF for NP0138418 (Deoxygerfelin)

3D-SDF for NP0138418 (Deoxygerfelin)

PDB for NP0138418 (Deoxygerfelin)

3D PDB for NP0138418 (Deoxygerfelin)

SMILES for NP0138418 (Deoxygerfelin)

INCHI for NP0138418 (Deoxygerfelin)

Structure for NP0138418 (Deoxygerfelin)

3D Structure for NP0138418 (Deoxygerfelin)