NP-MRD: Showing NP-Card for (-)-Polygalasaponin XLVI (NP0082412)

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Record Information

Version

2.0

Created at

2022-04-29 03:26:38 UTC

Updated at

2022-04-29 03:26:38 UTC

NP-MRD ID

NP0082412

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Polygalasaponin XLVI

Description

Polygalasaponin XLV belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton. (-)-Polygalasaponin XLVI is found in Polygala glomerata . (-)-Polygalasaponin XLVI was first documented in 2015 (PMID: 26666038). Based on a literature review very few articles have been published on Polygalasaponin XLV.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205262D          

116127  0  0  1  0            999 V2000
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2520    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7766   -0.7392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1058   -1.1265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.7770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3020   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3977    1.5642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3689    2.3887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1261    1.1768    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2732    1.9515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.9355   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6907    1.9475    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.3770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.2020    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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   11.4395    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

232243  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652304292205262D          

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 19 24  1  0  0  0  0
 24 25  1  1  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 24 28  1  6  0  0  0
 23 29  1  6  0  0  0
 30 29  1  6  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 30 35  1  0  0  0  0
 35 36  1  1  0  0  0
 34 37  1  6  0  0  0
 33 38  1  1  0  0  0
 32 39  1  6  0  0  0
 39 40  1  0  0  0  0
 22 41  1  6  0  0  0
 20 42  1  6  0  0  0
 16 43  1  6  0  0  0
 11 44  1  1  0  0  0
 44 45  1  0  0  0  0
  3 46  1  6  0  0  0
 46 47  2  0  0  0  0
 46 48  1  0  0  0  0
 49 48  1  6  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 49 54  1  0  0  0  0
 54 55  1  1  0  0  0
 56 55  1  6  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 56 61  1  0  0  0  0
 60 62  1  1  0  0  0
 59 63  1  6  0  0  0
 64 63  1  1  0  0  0
 64 65  1  0  0  0  0
 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
 67 68  1  0  0  0  0
 68 69  1  0  0  0  0
 64 69  1  0  0  0  0
 69 70  1  6  0  0  0
 68 71  1  1  0  0  0
 67 72  1  6  0  0  0
 73 72  1  1  0  0  0
 73 74  1  0  0  0  0
 74 75  1  0  0  0  0
 75 76  1  0  0  0  0
 76 77  1  0  0  0  0
 77 78  1  0  0  0  0
 73 78  1  0  0  0  0
 77 79  1  1  0  0  0
 79 80  1  0  0  0  0
 76 81  1  1  0  0  0
 75 82  1  1  0  0  0
 74 83  1  6  0  0  0
 58 84  1  1  0  0  0
 57 85  1  1  0  0  0
 53 86  1  6  0  0  0
 87 86  1  6  0  0  0
 87 88  1  0  0  0  0
 88 89  1  0  0  0  0
 89 90  1  0  0  0  0
 90 91  1  0  0  0  0
 91 92  1  0  0  0  0
 87 92  1  0  0  0  0
 92 93  1  1  0  0  0
 91 94  1  6  0  0  0
 90 95  1  1  0  0  0
 89 96  1  6  0  0  0
 96 97  1  0  0  0  0
 97 98  1  0  0  0  0
 98 99  2  0  0  0  0
 98100  1  0  0  0  0
 52101  1  6  0  0  0
101102  1  0  0  0  0
102103  2  0  0  0  0
102104  1  0  0  0  0
104105  2  0  0  0  0
105106  1  0  0  0  0
106107  2  0  0  0  0
107108  1  0  0  0  0
108109  2  0  0  0  0
109110  1  0  0  0  0
110111  2  0  0  0  0
106111  1  0  0  0  0
110112  1  0  0  0  0
112113  1  0  0  0  0
109114  1  0  0  0  0
114115  1  0  0  0  0
 51116  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0082412

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(\C=C\C(=O)O[C@H]2[C@@H](C)O[C@@H](OC(=O)[C@]34CCC(C)(C)C[C@H]3C3=CC[C@@H]5[C@@]6(C)C[C@H](O)[C@H](O[C@@H]7O[C@H](CO)[C@@H](O)[C@H](O)[C@H]7O)[C@](C)([C@@H]6CC[C@@]5(C)[C@]3(CO)CC4)C(O)=O)[C@H](O[C@@H]3O[C@@H](C)[C@H](O[C@@H]4OC[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4O)[C@@H](O)[C@H]3O)[C@H]2O[C@@H]2O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]2O)C=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C78H116O38/c1-31-60(112-65-55(93)50(88)43(29-104-65)109-67-56(94)51(89)47(85)40(26-79)107-67)54(92)59(97)66(105-31)114-63-62(113-68-57(95)53(91)49(87)42(110-68)28-103-33(3)82)61(111-46(84)16-12-34-11-14-38(101-9)39(23-34)102-10)32(2)106-70(63)116-72(100)77-20-19-73(4,5)24-36(77)35-13-15-44-74(6)25-37(83)64(115-69-58(96)52(90)48(86)41(27-80)108-69)76(8,71(98)99)45(74)17-18-75(44,7)78(35,30-81)22-21-77/h11-14,16,23,31-32,36-37,40-45,47-70,79-81,83,85-97H,15,17-22,24-30H2,1-10H3,(H,98,99)/b16-12+/t31-,32+,36-,37-,40+,41+,42+,43+,44+,45+,47-,48+,49+,50-,51-,52-,53-,54-,55+,56+,57+,58+,59+,60-,61-,62-,63+,64-,65-,66-,67-,68-,69-,70-,74+,75+,76-,77-,78-/m0/s1

> <INCHI_KEY>
HOEZTVSWBCAGSJ-ZVKNEIQYSA-N

> <FORMULA>
C78H116O38

> <MOLECULAR_WEIGHT>
1661.748

> <EXACT_MASS>
1660.714459295

> <JCHEM_ACCEPTOR_COUNT>
35

> <JCHEM_ATOM_COUNT>
232

> <JCHEM_AVERAGE_POLARIZABILITY>
172.40730145425835

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
18

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,4aR,6aR,6bR,8aS,12aS,14aR,14bR)-8a-({[(2S,3R,4S,5S,6R)-4-{[(2S,3R,4S,5S,6R)-6-[(acetyloxy)methyl]-3,4,5-trihydroxyoxan-2-yl]oxy}-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4R,5R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-5-{[(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoyl]oxy}-6-methyloxan-2-yl]oxy}carbonyl)-2-hydroxy-6b-(hydroxymethyl)-4,6a,11,11,14b-pentamethyl-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicene-4-carboxylic acid

> <ALOGPS_LOGP>
0.75

> <JCHEM_LOGP>
-1.8075665806666703

> <ALOGPS_LOGS>
-3.13

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
12

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.633672865634848

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.166657229856815

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6795483896005408

> <JCHEM_POLAR_SURFACE_AREA>
580.1000000000004

> <JCHEM_REFRACTIVITY>
385.57129999999984

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.23e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,4aR,6aR,6bR,8aS,12aS,14aR,14bR)-8a-({[(2S,3R,4S,5S,6R)-4-{[(2S,3R,4S,5S,6R)-6-[(acetyloxy)methyl]-3,4,5-trihydroxyoxan-2-yl]oxy}-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4R,5R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-5-{[(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoyl]oxy}-6-methyloxan-2-yl]oxy}carbonyl)-2-hydroxy-6b-(hydroxymethyl)-4,6a,11,11,14b-pentamethyl-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.034   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.344   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.114   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.344  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.650  -1.380   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.397  -2.103   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.034   3.437   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.494   3.437   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.414   3.437   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.742   2.920   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -0.689   4.459   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      -2.102   2.197   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       0.510   3.643   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.746   0.770   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -2.516  -0.564   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -1.746  -1.897   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -2.516  -3.231   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -4.056  -3.231   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -4.826  -1.897   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -4.056  -0.564   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      -4.826   0.770   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0      -6.366  -1.897   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      -4.826  -4.565   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.746  -4.565   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -2.516  -5.898   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      -0.206  -1.897   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       5.023   3.635   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0       6.724   4.771   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      10.574   3.437   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0       9.804   4.771   0.000  0.00  0.00           O+0
HETATM   48  O   UNK     0      12.114   3.437   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      12.884   4.771   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      12.114   6.105   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      12.884   7.438   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      14.424   7.438   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      15.194   6.105   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      14.424   4.771   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      15.194   3.437   0.000  0.00  0.00           O+0
HETATM   56  C   UNK     0      16.734   3.437   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      17.504   2.104   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      19.044   2.104   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      19.814   3.437   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      19.044   4.771   0.000  0.00  0.00           C+0
HETATM   61  O   UNK     0      17.504   4.771   0.000  0.00  0.00           O+0
HETATM   62  C   UNK     0      19.814   6.105   0.000  0.00  0.00           C+0
HETATM   63  O   UNK     0      21.354   3.437   0.000  0.00  0.00           O+0
HETATM   64  C   UNK     0      22.124   2.104   0.000  0.00  0.00           C+0
HETATM   65  O   UNK     0      21.354   0.770   0.000  0.00  0.00           O+0
HETATM   66  C   UNK     0      22.124  -0.564   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      23.664  -0.564   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      24.434   0.770   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      23.664   2.104   0.000  0.00  0.00           C+0
HETATM   70  O   UNK     0      24.434   3.437   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0      25.974   0.770   0.000  0.00  0.00           O+0
HETATM   72  O   UNK     0      24.434  -1.897   0.000  0.00  0.00           O+0
HETATM   73  C   UNK     0      23.664  -3.231   0.000  0.00  0.00           C+0
HETATM   74  C   UNK     0      24.434  -4.565   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      23.664  -5.898   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      22.124  -5.898   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0      21.354  -4.565   0.000  0.00  0.00           C+0
HETATM   78  O   UNK     0      22.124  -3.231   0.000  0.00  0.00           O+0
HETATM   79  C   UNK     0      19.814  -4.565   0.000  0.00  0.00           C+0
HETATM   80  O   UNK     0      19.044  -5.898   0.000  0.00  0.00           O+0
HETATM   81  O   UNK     0      21.354  -7.232   0.000  0.00  0.00           O+0
HETATM   82  O   UNK     0      24.434  -7.232   0.000  0.00  0.00           O+0
HETATM   83  O   UNK     0      25.974  -4.565   0.000  0.00  0.00           O+0
HETATM   84  O   UNK     0      19.814   0.770   0.000  0.00  0.00           O+0
HETATM   85  O   UNK     0      16.734   0.770   0.000  0.00  0.00           O+0
HETATM   86  O   UNK     0      16.734   6.105   0.000  0.00  0.00           O+0
HETATM   87  C   UNK     0      17.504   7.438   0.000  0.00  0.00           C+0
HETATM   88  O   UNK     0      16.734   8.772   0.000  0.00  0.00           O+0
HETATM   89  C   UNK     0      17.504  10.106   0.000  0.00  0.00           C+0
HETATM   90  C   UNK     0      19.044  10.106   0.000  0.00  0.00           C+0
HETATM   91  C   UNK     0      19.814   8.772   0.000  0.00  0.00           C+0
HETATM   92  C   UNK     0      19.044   7.438   0.000  0.00  0.00           C+0
HETATM   93  O   UNK     0      20.451   6.812   0.000  0.00  0.00           O+0
HETATM   94  O   UNK     0      21.354   8.772   0.000  0.00  0.00           O+0
HETATM   95  O   UNK     0      19.814  11.439   0.000  0.00  0.00           O+0
HETATM   96  C   UNK     0      16.734  11.439   0.000  0.00  0.00           C+0
HETATM   97  O   UNK     0      17.504  12.773   0.000  0.00  0.00           O+0
HETATM   98  C   UNK     0      19.044  12.773   0.000  0.00  0.00           C+0
HETATM   99  O   UNK     0      20.451  12.147   0.000  0.00  0.00           O+0
HETATM  100  C   UNK     0      19.814  14.107   0.000  0.00  0.00           C+0
HETATM  101  O   UNK     0      15.194   8.772   0.000  0.00  0.00           O+0
HETATM  102  C   UNK     0      14.424  10.106   0.000  0.00  0.00           C+0
HETATM  103  O   UNK     0      12.884  10.106   0.000  0.00  0.00           O+0
HETATM  104  C   UNK     0      15.194  11.439   0.000  0.00  0.00           C+0
HETATM  105  C   UNK     0      14.424  12.773   0.000  0.00  0.00           C+0
HETATM  106  C   UNK     0      15.194  14.107   0.000  0.00  0.00           C+0
HETATM  107  C   UNK     0      14.424  15.440   0.000  0.00  0.00           C+0
HETATM  108  C   UNK     0      15.194  16.774   0.000  0.00  0.00           C+0
HETATM  109  C   UNK     0      16.734  16.774   0.000  0.00  0.00           C+0
HETATM  110  C   UNK     0      17.504  15.440   0.000  0.00  0.00           C+0
HETATM  111  C   UNK     0      16.734  14.107   0.000  0.00  0.00           C+0
HETATM  112  O   UNK     0      19.044  15.440   0.000  0.00  0.00           O+0
HETATM  113  C   UNK     0      19.814  16.774   0.000  0.00  0.00           C+0
HETATM  114  O   UNK     0      17.504  18.108   0.000  0.00  0.00           O+0
HETATM  115  C   UNK     0      16.734  19.442   0.000  0.00  0.00           C+0
HETATM  116  C   UNK     0      12.114   8.772   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   12                                                  
CONECT    3    2    4    9   46                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1    7    8                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    3   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16   44                                             
CONECT   12   11    2   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   11   17   43                                             
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   15   21   42                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   41                                                  
CONECT   23   22   24   29                                                  
CONECT   24   23   19   25   28                                             
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   24                                                            
CONECT   29   23   30                                                       
CONECT   30   29   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   39                                                  
CONECT   33   32   34   38                                                  
CONECT   34   33   35   37                                                  
CONECT   35   34   30   36                                                  
CONECT   36   35                                                            
CONECT   37   34                                                            
CONECT   38   33                                                            
CONECT   39   32   40                                                       
CONECT   40   39                                                            
CONECT   41   22                                                            
CONECT   42   20                                                            
CONECT   43   16                                                            
CONECT   44   11   45                                                       
CONECT   45   44                                                            
CONECT   46    3   47   48                                                  
CONECT   47   46                                                            
CONECT   48   46   49                                                       
CONECT   49   48   50   54                                                  
CONECT   50   49   51                                                       
CONECT   51   50   52  116                                                  
CONECT   52   51   53  101                                                  
CONECT   53   52   54   86                                                  
CONECT   54   53   49   55                                                  
CONECT   55   54   56                                                       
CONECT   56   55   57   61                                                  
CONECT   57   56   58   85                                                  
CONECT   58   57   59   84                                                  
CONECT   59   58   60   63                                                  
CONECT   60   59   61   62                                                  
CONECT   61   60   56                                                       
CONECT   62   60                                                            
CONECT   63   59   64                                                       
CONECT   64   63   65   69                                                  
CONECT   65   64   66                                                       
CONECT   66   65   67                                                       
CONECT   67   66   68   72                                                  
CONECT   68   67   69   71                                                  
CONECT   69   68   64   70                                                  
CONECT   70   69                                                            
CONECT   71   68                                                            
CONECT   72   67   73                                                       
CONECT   73   72   74   78                                                  
CONECT   74   73   75   83                                                  
CONECT   75   74   76   82                                                  
CONECT   76   75   77   81                                                  
CONECT   77   76   78   79                                                  
CONECT   78   77   73                                                       
CONECT   79   77   80                                                       
CONECT   80   79                                                            
CONECT   81   76                                                            
CONECT   82   75                                                            
CONECT   83   74                                                            
CONECT   84   58                                                            
CONECT   85   57                                                            
CONECT   86   53   87                                                       
CONECT   87   86   88   92                                                  
CONECT   88   87   89                                                       
CONECT   89   88   90   96                                                  
CONECT   90   89   91   95                                                  
CONECT   91   90   92   94                                                  
CONECT   92   91   87   93                                                  
CONECT   93   92                                                            
CONECT   94   91                                                            
CONECT   95   90                                                            
CONECT   96   89   97                                                       
CONECT   97   96   98                                                       
CONECT   98   97   99  100                                                  
CONECT   99   98                                                            
CONECT  100   98                                                            
CONECT  101   52  102                                                       
CONECT  102  101  103  104                                                  
CONECT  103  102                                                            
CONECT  104  102  105                                                       
CONECT  105  104  106                                                       
CONECT  106  105  107  111                                                  
CONECT  107  106  108                                                       
CONECT  108  107  109                                                       
CONECT  109  108  110  114                                                  
CONECT  110  109  111  112                                                  
CONECT  111  110  106                                                       
CONECT  112  110  113                                                       
CONECT  113  112                                                            
CONECT  114  109  115                                                       
CONECT  115  114                                                            
CONECT  116   51                                                            
MASTER        0    0    0    0    0    0    0    0  116    0  254    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₇₈H₁₁₆O₃₈

Average Mass

1661.7480 Da

Monoisotopic Mass

1660.71446 Da

IUPAC Name

(2S,3R,4S,4aR,6aR,6bR,8aS,12aS,14aR,14bR)-8a-({[(2S,3R,4S,5S,6R)-4-{[(2S,3R,4S,5S,6R)-6-[(acetyloxy)methyl]-3,4,5-trihydroxyoxan-2-yl]oxy}-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4R,5R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-5-{[(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoyl]oxy}-6-methyloxan-2-yl]oxy}carbonyl)-2-hydroxy-6b-(hydroxymethyl)-4,6a,11,11,14b-pentamethyl-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicene-4-carboxylic acid

Traditional Name

(2S,3R,4S,4aR,6aR,6bR,8aS,12aS,14aR,14bR)-8a-({[(2S,3R,4S,5S,6R)-4-{[(2S,3R,4S,5S,6R)-6-[(acetyloxy)methyl]-3,4,5-trihydroxyoxan-2-yl]oxy}-3-{[(2S,3R,4S,5R,6S)-5-{[(2S,3R,4R,5R)-3,4-dihydroxy-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-5-{[(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoyl]oxy}-6-methyloxan-2-yl]oxy}carbonyl)-2-hydroxy-6b-(hydroxymethyl)-4,6a,11,11,14b-pentamethyl-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4-carboxylic acid

CAS Registry Number

Not Available

SMILES

COC1=CC=C(\C=C\C(=O)O[C@H]2[C@@H](C)O[C@@H](OC(=O)[C@]34CCC(C)(C)C[C@H]3C3=CC[C@@H]5[C@@]6(C)C[C@H](O)[C@H](O[C@@H]7O[C@H](CO)[C@@H](O)[C@H](O)[C@H]7O)[C@](C)([C@@H]6CC[C@@]5(C)[C@]3(CO)CC4)C(O)=O)[C@H](O[C@@H]3O[C@@H](C)[C@H](O[C@@H]4OC[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4O)[C@@H](O)[C@H]3O)[C@H]2O[C@@H]2O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]2O)C=C1OC

InChI Identifier

InChI=1S/C78H116O38/c1-31-60(112-65-55(93)50(88)43(29-104-65)109-67-56(94)51(89)47(85)40(26-79)107-67)54(92)59(97)66(105-31)114-63-62(113-68-57(95)53(91)49(87)42(110-68)28-103-33(3)82)61(111-46(84)16-12-34-11-14-38(101-9)39(23-34)102-10)32(2)106-70(63)116-72(100)77-20-19-73(4,5)24-36(77)35-13-15-44-74(6)25-37(83)64(115-69-58(96)52(90)48(86)41(27-80)108-69)76(8,71(98)99)45(74)17-18-75(44,7)78(35,30-81)22-21-77/h11-14,16,23,31-32,36-37,40-45,47-70,79-81,83,85-97H,15,17-22,24-30H2,1-10H3,(H,98,99)/b16-12+/t31-,32+,36-,37-,40+,41+,42+,43+,44+,45+,47-,48+,49+,50-,51-,52-,53-,54-,55+,56+,57+,58+,59+,60-,61-,62-,63+,64-,65-,66-,67-,68-,69-,70-,74+,75+,76-,77-,78-/m0/s1

InChI Key

HOEZTVSWBCAGSJ-ZVKNEIQYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Polygala glomerata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Triterpene saponins

Alternative Parents

Substituents

Triterpene saponin
Triterpenoid
Oligosaccharide
Hydroxysteroid
15-hydroxysteroid
12-hydroxysteroid
12-alpha-hydroxysteroid
Steroid
Fatty acyl glycoside
Tetracarboxylic acid or derivatives
Cinnamic acid or derivatives
Coumaric acid or derivatives
Cinnamic acid ester
O-glycosyl compound
Glycosyl compound
Dimethoxybenzene
O-dimethoxybenzene
Styrene
Methoxybenzene
Phenoxy compound
Anisole
Phenol ether
Alkyl aryl ether
Fatty acid ester
Fatty acyl
Monocyclic benzene moiety
Oxane
Benzenoid
Cyclic alcohol
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Secondary alcohol
Carboxylic acid ester
Polyol
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Organoheterocyclic compound
Acetal
Ether
Organooxygen compound
Organic oxygen compound
Primary alcohol
Organic oxide
Hydrocarbon derivative
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.75	ALOGPS
logP	-1.8	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	4.17	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	35	ChemAxon
Hydrogen Donor Count	18	ChemAxon
Polar Surface Area	580.1 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	385.57 m³·mol⁻¹	ChemAxon
Polarizability	172.41 Å³	ChemAxon
Number of Rings	12	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00034165

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101941089

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zha HY, Yang XD, Zhang LJ, Jin DQ, Wang Z, Xu LZ, Yang SL: [Saponins from roots of Securidaca inappendiculata with cytotoxic activities]. Zhongguo Zhong Yao Za Zhi. 2015 Jul;40(14):2849-53. [PubMed:26666038 ]

Showing NP-Card for (-)-Polygalasaponin XLVI (NP0082412)

MOL for NP0082412 ((-)-Polygalasaponin XLVI)

3D MOL for NP0082412 ((-)-Polygalasaponin XLVI)

3D SDF for NP0082412 ((-)-Polygalasaponin XLVI)

3D-SDF for NP0082412 ((-)-Polygalasaponin XLVI)

PDB for NP0082412 ((-)-Polygalasaponin XLVI)

3D PDB for NP0082412 ((-)-Polygalasaponin XLVI)

SMILES for NP0082412 ((-)-Polygalasaponin XLVI)

INCHI for NP0082412 ((-)-Polygalasaponin XLVI)

Structure for NP0082412 ((-)-Polygalasaponin XLVI)

3D Structure for NP0082412 ((-)-Polygalasaponin XLVI)