NP-MRD: Showing NP-Card for (+)-Stemofoline (NP0070466)

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Record Information

Version

2.0

Created at

2022-04-28 15:52:08 UTC

Updated at

2022-04-28 15:52:08 UTC

NP-MRD ID

NP0070466

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Stemofoline

Description

5-[(1R,3Z,4S,5R,6S,8S,9S,13R)-9-butyl-4-methyl-2,14-dioxa-10-azapentacyclo[6.5.1.0¹,⁵.0⁶,¹⁰.0⁹,¹³]Tetradecan-3-ylidene]-4-methoxy-3-methyl-2,5-dihydrofuran-2-one belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. (+)-Stemofoline is found in Stemona aphylla, Stemona burkillii, Stemona cochinchinensis, Stemona collinsae, Stemona curtisii, Stemona japonica and Stemona parviflora. Based on a literature review very few articles have been published on 5-[(1R,3Z,4S,5R,6S,8S,9S,13R)-9-butyl-4-methyl-2,14-dioxa-10-azapentacyclo[6.5.1.0¹,⁵.0⁶,¹⁰.0⁹,¹³]Tetradecan-3-ylidene]-4-methoxy-3-methyl-2,5-dihydrofuran-2-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304282217522D          

 28 33  0  0  1  0            999 V2000
    3.0810   -0.0436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8006    0.3696    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5889    0.7175    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9442    1.0410    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9737    0.8179    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7764    1.7001    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5789    2.0167    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4243    1.2036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3743    1.6609    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.1065    2.0738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8795    1.2710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0198    2.0920    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5512    1.3982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7276    1.3507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2050    1.9890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5636    1.6893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5161    0.8657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1545    0.3431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2819    0.6564    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2579    2.1349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4143    2.7871    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1722    3.3673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1026    0.7559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8161    2.8915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3261    0.3470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0155    0.8001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7526    0.4296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4420    0.8827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  1  1  1  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  2  8  1  0  0  0  0
  7  9  1  0  0  0  0
  3  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  4 11  1  6  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 14 19  1  0  0  0  0
 16 20  1  0  0  0  0
 15 21  1  0  0  0  0
 21 22  1  0  0  0  0
 13 23  1  0  0  0  0
  5 23  1  0  0  0  0
 12 24  1  1  0  0  0
  3 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END


  Mrv1652304282217522D          

 28 33  0  0  1  0            999 V2000
    3.0810   -0.0436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8006    0.3696    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5889    0.7175    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9442    1.0410    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9737    0.8179    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7764    1.7001    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5789    2.0167    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4243    1.2036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3743    1.6609    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.1065    2.0738    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8795    1.2710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0198    2.0920    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5512    1.3982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7276    1.3507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2050    1.9890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5636    1.6893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5161    0.8657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1545    0.3431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2819    0.6564    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2579    2.1349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4143    2.7871    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1722    3.3673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1026    0.7559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8161    2.8915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3261    0.3470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0155    0.8001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7526    0.4296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4420    0.8827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  1  1  1  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  2  8  1  0  0  0  0
  7  9  1  0  0  0  0
  3  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  4 11  1  6  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 14 19  1  0  0  0  0
 16 20  1  0  0  0  0
 15 21  1  0  0  0  0
 21 22  1  0  0  0  0
 13 23  1  0  0  0  0
  5 23  1  0  0  0  0
 12 24  1  1  0  0  0
  3 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0070466

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC[C@@]12[C@@H]3C[C@H]4[C@H]5[C@H](C)\C(O[C@@]5(O3)[C@@H]1CCN24)=C1\OC(=O)C(C)=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C22H29NO5/c1-5-6-8-21-14-7-9-23(21)13-10-15(21)27-22(14)16(13)11(2)18(28-22)19-17(25-4)12(3)20(24)26-19/h11,13-16H,5-10H2,1-4H3/b19-18-/t11-,13-,14+,15-,16+,21-,22-/m0/s1

> <INCHI_KEY>
DTVYAHOULQCSMS-JRCMVJBUSA-N

> <FORMULA>
C22H29NO5

> <MOLECULAR_WEIGHT>
387.476

> <EXACT_MASS>
387.204573038

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
23.290581680655254

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(1R,3Z,4S,5R,6S,8S,9S,13R)-9-butyl-4-methyl-2,14-dioxa-10-azapentacyclo[6.5.1.0^{1,5}.0^{6,10}.0^{9,13}]tetradecan-3-ylidene]-4-methoxy-3-methyl-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
3.21

> <JCHEM_LOGP>
2.4878923363333323

> <ALOGPS_LOGS>
-2.90

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
10.14374932240474

> <JCHEM_POLAR_SURFACE_AREA>
57.230000000000004

> <JCHEM_REFRACTIVITY>
104.20950000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.85e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(1R,3Z,4S,5R,6S,8S,9S,13R)-9-butyl-4-methyl-2,14-dioxa-10-azapentacyclo[6.5.1.0^{1,5}.0^{6,10}.0^{9,13}]tetradecan-3-ylidene]-4-methoxy-3-methylfuran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  O   UNK     0       5.751  -0.081   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.095   0.690   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.566   1.339   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.363   1.943   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.551   1.527   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.183   3.174   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.681   3.765   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.392   2.247   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       8.165   3.100   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       9.532   3.871   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.108   2.372   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.770   3.905   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.896   2.610   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.358   2.521   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.383   3.713   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.052   3.153   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.963   1.616   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -2.155   0.640   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       0.526   1.225   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.348   3.985   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.773   5.203   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -0.321   6.286   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       3.925   1.411   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       3.390   5.397   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.942   0.648   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.229   1.493   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      12.605   0.802   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.892   1.648   0.000  0.00  0.00           C+0
CONECT    1    2    5                                                       
CONECT    2    1    3    8                                                  
CONECT    3    2    4    9   25                                             
CONECT    4    3    5   11                                                  
CONECT    5    4    1    6   23                                             
CONECT    6    5    7   12                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    2                                                       
CONECT    9    7    3   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10    4                                                       
CONECT   12    6   13   24                                                  
CONECT   13   12   14   23                                                  
CONECT   14   13   15   19                                                  
CONECT   15   14   16   21                                                  
CONECT   16   15   17   20                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   14                                                       
CONECT   20   16                                                            
CONECT   21   15   22                                                       
CONECT   22   21                                                            
CONECT   23   13    5                                                       
CONECT   24   12                                                            
CONECT   25    3   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₂₉NO₅

Average Mass

387.4760 Da

Monoisotopic Mass

387.20457 Da

IUPAC Name

5-[(1R,3Z,4S,5R,6S,8S,9S,13R)-9-butyl-4-methyl-2,14-dioxa-10-azapentacyclo[6.5.1.0^{1,5}.0^{6,10}.0^{9,13}]tetradecan-3-ylidene]-4-methoxy-3-methyl-2,5-dihydrofuran-2-one

Traditional Name

5-[(1R,3Z,4S,5R,6S,8S,9S,13R)-9-butyl-4-methyl-2,14-dioxa-10-azapentacyclo[6.5.1.0^{1,5}.0^{6,10}.0^{9,13}]tetradecan-3-ylidene]-4-methoxy-3-methylfuran-2-one

CAS Registry Number

Not Available

SMILES

CCCC[C@@]12[C@@H]3C[C@H]4[C@H]5[C@H](C)\C(O[C@@]5(O3)[C@@H]1CCN24)=C1\OC(=O)C(C)=C1OC

InChI Identifier

InChI=1S/C22H29NO5/c1-5-6-8-21-14-7-9-23(21)13-10-15(21)27-22(14)16(13)11(2)18(28-22)19-17(25-4)12(3)20(24)26-19/h11,13-16H,5-10H2,1-4H3/b19-18-/t11-,13-,14+,15-,16+,21-,22-/m0/s1

InChI Key

DTVYAHOULQCSMS-JRCMVJBUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Stemona aphylla	Plant	KNApSAcK
Stemona burkillii	Plant	KNApSAcK
Stemona cochinchinensis	Plant	KNApSAcK
Stemona collinsiae	Plant	KNApSAcK
Stemona curtisii	Plant	KNApSAcK
Stemona japonica	Plant	KNApSAcK
Stemona parviflora	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Aminoglycosides

Alternative Parents

Substituents

Aminoglycoside core
Stemoamide backbone
Stemona alkaloid
Furopyran
Pyrrolizidine
Ketal
Azepane
Para-oxazepine
N-alkylpyrrolidine
Pyran
Piperidine
Oxane
2-furanone
Vinylogous ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Pyrrolidine
Furan
Enol ester
Dihydrofuran
Tertiary aliphatic amine
Tertiary amine
Lactone
Carboxylic acid ester
Amino acid or derivatives
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Acetal
Organic nitrogen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organonitrogen compound
Carbonyl group
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.21	ALOGPS
logP	2.49	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Basic)	10.14	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	57.23 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	104.21 m³·mol⁻¹	ChemAxon
Polarizability	23.29 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162859382

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Stemofoline (NP0070466)

MOL for NP0070466 ((+)-Stemofoline)

3D MOL for NP0070466 ((+)-Stemofoline)

3D SDF for NP0070466 ((+)-Stemofoline)

3D-SDF for NP0070466 ((+)-Stemofoline)

PDB for NP0070466 ((+)-Stemofoline)

3D PDB for NP0070466 ((+)-Stemofoline)

SMILES for NP0070466 ((+)-Stemofoline)

INCHI for NP0070466 ((+)-Stemofoline)

Structure for NP0070466 ((+)-Stemofoline)

3D Structure for NP0070466 ((+)-Stemofoline)