NP-MRD: Showing NP-Card for (+)-Arburatubolactam C (NP0069520)

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Record Information

Version

2.0

Created at

2022-04-28 14:52:58 UTC

Updated at

2022-04-28 14:52:59 UTC

NP-MRD ID

NP0069520

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Arburatubolactam C

Description

(7S,8R,9S,10R,12R,14S,16E,18E,25R)-10-ethyl-20,28-dihydroxy-9,26-dimethyl-21,26-diazatetracyclo[23.2.1.0⁷,¹⁴.0⁸,¹²]Octacosa-1(28),5,16,18,20-pentaene-2,15,27-trione belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. (+)-Arburatubolactam C is found in Streptomyces sp. SCRCA-20. Based on a literature review very few articles have been published on (7S,8R,9S,10R,12R,14S,16E,18E,25R)-10-ethyl-20,28-dihydroxy-9,26-dimethyl-21,26-diazatetracyclo[23.2.1.0⁷,¹⁴.0⁸,¹²]Octacosa-1(28),5,16,18,20-pentaene-2,15,27-trione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282216532D          

 37 40  0  0  1  0            999 V2000
    8.4409    1.4612    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

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M  END


  Mrv1652304282216532D          

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    6.6621    2.6864    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.6413    3.5111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2163    2.4199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6173    1.8526    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  6  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
  1 22  1  0  0  0  0
 22 23  2  0  0  0  0
 11 24  1  6  0  0  0
 24 25  1  0  0  0  0
  9 25  1  0  0  0  0
 25 26  2  0  0  0  0
 24 27  1  0  0  0  0
 10 28  1  0  0  0  0
 29  2  1  6  0  0  0
 29 30  1  0  0  0  0
 30 31  1  1  0  0  0
  1 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 29 34  1  0  0  0  0
 34 35  1  6  0  0  0
 33 36  1  1  0  0  0
 36 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0069520

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H]1C[C@@H]2C[C@H]3[C@@H](\C=C\CCC(=O)C4=C(O)[C@@H](CCCNC(=O)\C=C\C=C\C3=O)N(C)C4=O)[C@H]2[C@H]1C

> <INCHI_IDENTIFIER>
InChI=1S/C30H40N2O5/c1-4-19-16-20-17-22-21(27(20)18(19)2)10-5-6-13-25(34)28-29(36)23(32(3)30(28)37)11-9-15-31-26(35)14-8-7-12-24(22)33/h5,7-8,10,12,14,18-23,27,36H,4,6,9,11,13,15-17H2,1-3H3,(H,31,35)/b10-5+,12-7+,14-8+/t18-,19+,20+,21+,22-,23+,27-/m0/s1

> <INCHI_KEY>
PZOGZFUWIDIULD-GGWKAVSWSA-N

> <FORMULA>
C30H40N2O5

> <MOLECULAR_WEIGHT>
508.659

> <EXACT_MASS>
508.293722396

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
56.18949295845938

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5E,7S,8R,9S,10R,12R,14S,16E,18E,25R)-10-ethyl-28-hydroxy-9,26-dimethyl-21,26-diazatetracyclo[23.2.1.0^{7,14}.0^{8,12}]octacosa-1(28),5,16,18-tetraene-2,15,20,27-tetrone

> <ALOGPS_LOGP>
4.37

> <JCHEM_LOGP>
3.5909416966666674

> <ALOGPS_LOGS>
-5.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.569024957782673

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.7811979969552065

> <JCHEM_PKA_STRONGEST_BASIC>
-0.1339788929753042

> <JCHEM_POLAR_SURFACE_AREA>
103.78000000000002

> <JCHEM_REFRACTIVITY>
147.30469999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.90e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5E,7S,8R,9S,10R,12R,14S,16E,18E,25R)-10-ethyl-28-hydroxy-9,26-dimethyl-21,26-diazatetracyclo[23.2.1.0^{7,14}.0^{8,12}]octacosa-1(28),5,16,18-tetraene-2,15,20,27-tetrone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      15.756   2.728   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      15.244   4.180   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      16.245   5.350   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      17.759   5.068   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      18.760   6.238   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      20.274   5.956   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      20.787   4.503   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      19.785   3.333   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      22.301   4.221   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      22.813   2.769   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      24.327   2.487   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      24.840   1.035   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      23.839  -0.135   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      24.351  -1.588   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0      23.350  -2.758   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0      21.836  -2.475   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      20.835  -3.645   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      21.323  -1.023   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      19.809  -0.741   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      19.297   0.711   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      17.783   0.993   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      17.270   2.445   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      18.272   3.615   0.000  0.00  0.00           O+0
HETATM   24  N   UNK     0      24.785   4.023   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0      23.615   5.025   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      23.737   6.560   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      26.262   4.459   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      21.812   1.599   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      13.704   4.141   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      13.265   2.665   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      14.534   1.791   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      11.726   2.626   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      11.213   4.078   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.436   5.015   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      12.397   6.554   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       9.737   4.517   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       8.619   3.458   0.000  0.00  0.00           C+0
CONECT    1    2   22   31                                                  
CONECT    2    1    3   29                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   25                                                  
CONECT   10    9   11   28                                                  
CONECT   11   10   12   24                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21    1   23                                                  
CONECT   23   22                                                            
CONECT   24   11   25   27                                                  
CONECT   25   24    9   26                                                  
CONECT   26   25                                                            
CONECT   27   24                                                            
CONECT   28   10                                                            
CONECT   29    2   30   34                                                  
CONECT   30   29   31   32                                                  
CONECT   31   30    1                                                       
CONECT   32   30   33                                                       
CONECT   33   32   34   36                                                  
CONECT   34   33   29   35                                                  
CONECT   35   34                                                            
CONECT   36   33   37                                                       
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₀N₂O₅

Average Mass

508.6590 Da

Monoisotopic Mass

508.29372 Da

IUPAC Name

(5E,7S,8R,9S,10R,12R,14S,16E,18E,25R)-10-ethyl-28-hydroxy-9,26-dimethyl-21,26-diazatetracyclo[23.2.1.0^{7,14}.0^{8,12}]octacosa-1(28),5,16,18-tetraene-2,15,20,27-tetrone

Traditional Name

(5E,7S,8R,9S,10R,12R,14S,16E,18E,25R)-10-ethyl-28-hydroxy-9,26-dimethyl-21,26-diazatetracyclo[23.2.1.0^{7,14}.0^{8,12}]octacosa-1(28),5,16,18-tetraene-2,15,20,27-tetrone

CAS Registry Number

Not Available

SMILES

CC[C@@H]1C[C@@H]2C[C@H]3[C@@H](\C=C\CCC(=O)C4=C(O)[C@@H](CCCNC(=O)\C=C\C=C\C3=O)N(C)C4=O)[C@H]2[C@H]1C

InChI Identifier

InChI=1S/C30H40N2O5/c1-4-19-16-20-17-22-21(27(20)18(19)2)10-5-6-13-25(34)28-29(36)23(32(3)30(28)37)11-9-15-31-26(35)14-8-7-12-24(22)33/h5,7-8,10,12,14,18-23,27,36H,4,6,9,11,13,15-17H2,1-3H3,(H,31,35)/b10-5+,12-7+,14-8+/t18-,19+,20+,21+,22-,23+,27-/m0/s1

InChI Key

PZOGZFUWIDIULD-GGWKAVSWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp. SCRCA-20	Bacteria	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolactams

Sub Class

Not Available

Direct Parent

Macrolactams

Alternative Parents

Substituents

Macrolactam
Monoterpenoid
Vinylogous acid
Cyclic carboximidic acid
Tertiary carboxylic acid amide
Pyrroline
Lactam
Ketone
Carboxamide group
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Enol
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.37	ALOGPS
logP	3.59	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	3.78	ChemAxon
pKa (Strongest Basic)	-0.13	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	103.78 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	147.3 m³·mol⁻¹	ChemAxon
Polarizability	56.19 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163105615

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Arburatubolactam C (NP0069520)

MOL for NP0069520 ((+)-Arburatubolactam C)

3D MOL for NP0069520 ((+)-Arburatubolactam C)

3D SDF for NP0069520 ((+)-Arburatubolactam C)

3D-SDF for NP0069520 ((+)-Arburatubolactam C)

PDB for NP0069520 ((+)-Arburatubolactam C)

3D PDB for NP0069520 ((+)-Arburatubolactam C)

SMILES for NP0069520 ((+)-Arburatubolactam C)

INCHI for NP0069520 ((+)-Arburatubolactam C)

Structure for NP0069520 ((+)-Arburatubolactam C)

3D Structure for NP0069520 ((+)-Arburatubolactam C)