NP-MRD: Showing NP-Card for U 68204 (NP0061934)

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Record Information

Version

2.0

Created at

2022-04-28 06:37:21 UTC

Updated at

2022-04-28 06:37:21 UTC

NP-MRD ID

NP0061934

Secondary Accession Numbers

None

Natural Product Identification

Common Name

U 68204

Description

U 68204 belongs to the class of organic compounds known as monocyclic monoterpenoids. These are monoterpenoids containing 1 ring in the isoprene chain. U 68204 is found in Streptomyces thiolactonus UC 8478 (NRRL 15439). Based on a literature review very few articles have been published on U 68204.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 35  0  0  0  0  0  0  0  0999 V2000
   -3.9648    2.0415    1.7358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7642    1.5315    1.6528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2654    0.8278    0.4605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1260    0.6761   -0.7042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0456    0.3518    0.4892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4485   -0.3651   -0.6304 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1611   -1.6704   -0.9448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3085   -2.4084    0.3669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2013    0.6420   -2.1150 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.5368    0.9201   -1.8720 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2375    1.7619   -2.4313 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9070   -0.0571   -0.8867 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3738   -0.3138   -0.5788 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0039    0.9331   -0.1179 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3772    0.9210    0.2256 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3289    1.9775   -0.0354 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9767   -0.6850   -0.2804 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1760   -1.6892    0.7258 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3179    2.5588    2.6236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6802    1.9802    0.9382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1099    1.6482    2.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8793    1.5253   -0.7927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6278    0.6944   -1.6917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8021   -0.2184   -0.5832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4408    0.5029    1.4113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4163   -2.2660   -1.5559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0759   -1.5736   -1.5153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1908   -1.7175    1.2365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3139   -2.8810    0.3528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5672   -3.2193    0.4526 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8224   -0.6983   -1.5044 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5171   -1.0724    0.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0563    1.2893   -0.4665 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6649    0.5508    1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7292   -2.4985    0.4217 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0
  6  7  1  6
  6  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 12 17  2  0
 17 18  1  0
  6  5  1  0
  5  3  2  0
  3  4  1  0
  3  2  1  0
  2  1  2  0
 17  6  1  0
  8 28  1  0
  8 29  1  0
  8 30  1  0
  7 26  1  0
  7 27  1  0
 13 31  1  0
 13 32  1  0
 15 33  1  0
 15 34  1  0
 18 35  1  0
  5 25  1  0
  4 22  1  0
  4 23  1  0
  4 24  1  0
  2 21  1  0
  1 19  1  0
  1 20  1  0
M  END


  Mrv1652304282208372D          

 18 18  0  0  1  0            999 V2000
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4652   -0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1628    1.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5827    2.5432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1777    3.2619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5977    3.9720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4077    2.5345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9728    1.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7977    1.8417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1501   -0.7365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6351   -1.4039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4857    0.0172    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  5  6  2  0  0  0  0
  3  7  1  1  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  8 11  1  0  0  0  0
  3 12  1  6  0  0  0
 12 13  1  0  0  0  0
  2 14  1  0  0  0  0
  1 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0061934

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@]1(SC(=O)C(CC(N)=O)=C1O)\C=C(/C)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C13H17NO3S/c1-4-8(3)7-13(5-2)11(16)9(6-10(14)15)12(17)18-13/h4,7,16H,1,5-6H2,2-3H3,(H2,14,15)/b8-7+/t13-/m1/s1

> <INCHI_KEY>
UABLTRHPBMADHP-SBDDDAINSA-N

> <FORMULA>
C13H17NO3S

> <MOLECULAR_WEIGHT>
267.34

> <EXACT_MASS>
267.092914585

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
27.955944258160514

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(5R)-5-ethyl-4-hydroxy-5-[(1E)-2-methylbuta-1,3-dien-1-yl]-2-oxo-2,5-dihydrothiophen-3-yl]acetamide

> <ALOGPS_LOGP>
1.22

> <JCHEM_LOGP>
1.3866919809999994

> <ALOGPS_LOGS>
-3.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
16.426977468018347

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.517119945002306

> <JCHEM_PKA_STRONGEST_BASIC>
-2.460339140237898

> <JCHEM_POLAR_SURFACE_AREA>
80.39

> <JCHEM_REFRACTIVITY>
74.6244

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.89e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(5R)-5-ethyl-4-hydroxy-5-[(1E)-2-methylbuta-1,3-dien-1-yl]-2-oxothiophen-3-yl]acetamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    4  S   UNK     0       2.306   1.175   0.000  0.00  0.00           S+0
HETATM    5  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.735  -1.536   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.304   3.422   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.088   4.747   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.332   6.089   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.116   7.414   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.628   4.731   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.816   3.422   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.356   3.438   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.651   1.651   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.147  -1.375   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -3.052  -2.621   0.000  0.00  0.00           O+0
HETATM   18  N   UNK     0      -2.773   0.032   0.000  0.00  0.00           N+0
CONECT    1    2    5   15                                                  
CONECT    2    1    3   14                                                  
CONECT    3    2    4    7   12                                             
CONECT    4    3    5                                                       
CONECT    5    4    1    6                                                  
CONECT    6    5                                                            
CONECT    7    3    8                                                       
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8                                                            
CONECT   12    3   13                                                       
CONECT   13   12                                                            
CONECT   14    2                                                            
CONECT   15    1   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₇NO₃S

Average Mass

267.3400 Da

Monoisotopic Mass

267.09291 Da

IUPAC Name

2-[(5R)-5-ethyl-4-hydroxy-5-[(1E)-2-methylbuta-1,3-dien-1-yl]-2-oxo-2,5-dihydrothiophen-3-yl]acetamide

Traditional Name

2-[(5R)-5-ethyl-4-hydroxy-5-[(1E)-2-methylbuta-1,3-dien-1-yl]-2-oxothiophen-3-yl]acetamide

CAS Registry Number

Not Available

SMILES

CC[C@@]1(SC(=O)C(CC(N)=O)=C1O)\C=C(/C)C=C

InChI Identifier

InChI=1S/C13H17NO3S/c1-4-8(3)7-13(5-2)11(16)9(6-10(14)15)12(17)18-13/h4,7,16H,1,5-6H2,2-3H3,(H2,14,15)/b8-7+/t13-/m1/s1

InChI Key

UABLTRHPBMADHP-SBDDDAINSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces thiolactonus UC 8478 (NRRL 15439)	Bacteria	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as monocyclic monoterpenoids. These are monoterpenoids containing 1 ring in the isoprene chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Monocyclic monoterpenoids

Alternative Parents

Substituents

Monocyclic monoterpenoid
Vinylogous acid
Carbothioic s-lactone
2,5-dihydrothiophene
Thiocarboxylic acid ester
Organoheterocyclic compound
Thiocarboxylic acid or derivatives
Enol
Carboxylic acid derivative
Carboximidic acid derivative
Carboximidic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.22	ALOGPS
logP	1.39	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	6.52	ChemAxon
pKa (Strongest Basic)	-2.5	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	80.39 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	74.62 m³·mol⁻¹	ChemAxon
Polarizability	27.96 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00017744

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

135754250

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for U 68204 (NP0061934)

MOL for NP0061934 (U 68204)

3D MOL for NP0061934 (U 68204)

3D SDF for NP0061934 (U 68204)

3D-SDF for NP0061934 (U 68204)

PDB for NP0061934 (U 68204)

3D PDB for NP0061934 (U 68204)

SMILES for NP0061934 (U 68204)

INCHI for NP0061934 (U 68204)

Structure for NP0061934 (U 68204)

3D Structure for NP0061934 (U 68204)