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Record Information
Version2.0
Created at2021-06-19 20:46:00 UTC
Updated at2021-06-29 23:56:10 UTC
NP-MRD IDNP0029043
Secondary Accession NumbersNone
Natural Product Identification
Common Namecalcigeroside B
Provided ByJEOL DatabaseJEOL Logo
Description calcigeroside B is found in Pentamera calcigera. calcigeroside B was first documented in 2000 (Avilov, S. A., et al.).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC54H83NaO27S
Average Mass1219.2800 Da
Monoisotopic Mass1218.47401 Da
IUPAC Namesodium (3S,4S,5S,6R)-5-{[(2S,3R,4S,5S,6R)-5-{[(2R,3S,4R,5S,6S)-4-{[(2R,3S,4R,5S)-3,5-dihydroxy-4-methoxyoxan-2-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-methyl-3-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-4-hydroxy-6-{[(1R,4R,5R,8S,10R,14S,16R,19S)-5,9,9,14-tetramethyl-18-oxo-19-(prop-1-en-2-yl)-17-oxapentacyclo[14.2.1.0^{1,14}.0^{4,13}.0^{5,10}]nonadec-12-en-8-yl]oxy}oxan-3-yl sulfate
Traditional Namesodium (3S,4S,5S,6R)-5-{[(2S,3R,4S,5S,6R)-5-{[(2R,3S,4R,5S,6S)-4-{[(2R,3S,4R,5S)-3,5-dihydroxy-4-methoxyoxan-2-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-methyl-3-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-4-hydroxy-6-{[(1R,4R,5R,8S,10R,14S,16R,19S)-5,9,9,14-tetramethyl-18-oxo-19-(prop-1-en-2-yl)-17-oxapentacyclo[14.2.1.0^{1,14}.0^{4,13}.0^{5,10}]nonadec-12-en-8-yl]oxy}oxan-3-yl sulfate
CAS Registry NumberNot Available
SMILES
[Na+].[H]OC([H])([H])[C@]1([H])O[C@]([H])(O[C@]2([H])[C@]([H])(O[C@@]([H])(O[C@]3([H])[C@@]([H])(O[C@@]4([H])C([H])([H])C([H])([H])[C@]5(C([H])([H])[H])[C@]6([H])C(=C([H])C([H])([H])[C@@]5([H])C4(C([H])([H])[H])C([H])([H])[H])[C@]4(C([H])([H])[H])C([H])([H])[C@@]5([H])OC(=O)[C@]4(C([H])([H])C6([H])[H])[C@]5([H])C(=C([H])[H])C([H])([H])[H])OC([H])([H])[C@]([H])(O[S]([O-])(=O)=O)[C@@]3([H])O[H])[C@]([H])(O[C@@]3([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@]3([H])O[H])[C@@]2([H])O[H])C([H])([H])[H])[C@@]([H])(O[H])[C@]([H])(O[C@@]2([H])OC([H])([H])[C@]([H])(O[H])[C@@]([H])(OC([H])([H])[H])[C@]2([H])O[H])[C@@]1([H])O[H]
InChI Identifier
InChI=1S/C54H84O27S.Na/c1-20(2)31-26-16-53(8)24-10-11-29-51(5,6)30(13-14-52(29,7)23(24)12-15-54(31,53)50(65)75-26)76-48-43(34(59)28(19-71-48)81-82(66,67)68)80-49-44(79-46-36(61)35(60)32(57)21(3)72-46)37(62)40(22(4)73-49)77-47-39(64)42(33(58)27(17-55)74-47)78-45-38(63)41(69-9)25(56)18-70-45;/h10,21-23,25-49,55-64H,1,11-19H2,2-9H3,(H,66,67,68);/q;+1/p-1/t21-,22+,23-,25-,26+,27-,28-,29-,30-,31+,32-,33-,34+,35+,36-,37-,38-,39-,40+,41+,42+,43-,44+,45+,46+,47+,48+,49-,52+,53-,54-;/m0./s1
InChI KeyYGLPAJKLZHUQIT-CKVRAUBKSA-M
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 500 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 300 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 400 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 600 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 700 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 800 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 900 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 1000 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, C5D5N : D2O (4:1), simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pentamera calcigeraJEOL database
    • Avilov, S. A., et al, J. Nat. Prod. 63, 65 (2000)
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.07ALOGPS
logP-2.4ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)-2ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count25ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area396.56 ŲChemAxon
Rotatable Bond Count15ChemAxon
Refractivity271.28 m³·mol⁻¹ChemAxon
Polarizability120.79 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
External LinksNot Available
References
General References
  1. Avilov, S. A., et al. (2000). Avilov, S. A., et al, J. Nat. Prod. 63, 65 (2000). J. Nat. Prod..