NP-MRD: Showing NP-Card for RK-397 (NP0022826)

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Record Information

Version

1.0

Created at

2021-01-06 07:59:40 UTC

Updated at

2021-07-15 17:40:06 UTC

NP-MRD ID

NP0022826

Secondary Accession Numbers

None

Natural Product Identification

Common Name

RK-397

Provided By

NPAtlas

Description

RK-397 is found in Streptomyces sp. and Streptomyces sp. 87-397. It was first documented in 1993 (PMID: 8244892). Based on a literature review very few articles have been published on RK-397.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042108113D          

101101  0  0  0  0            999 V2000
   -6.5739   -1.3495    0.2634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2256   -1.5898    0.9219 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3883   -2.7116    1.8896 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1609   -1.8266   -0.1358 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8968   -2.0548    0.3608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4207   -2.7852    1.4035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7620   -2.1778    2.2921 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5749   -4.2153    1.6389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7555   -5.1083    0.6932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8431   -4.9586   -0.7297 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

101101  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652307042108113D          

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 37 38  1  0  0  0  0
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 40 41  1  0  0  0  0
 40 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 44  4  1  0  0  0  0
  1 46  1  0  0  0  0
  1 47  1  0  0  0  0
  1 48  1  0  0  0  0
  2 49  1  1  0  0  0
  3 50  1  0  0  0  0
  3 51  1  0  0  0  0
  3 52  1  0  0  0  0
  4 53  1  6  0  0  0
  8 54  1  0  0  0  0
  9 55  1  0  0  0  0
 10 56  1  0  0  0  0
 11 57  1  0  0  0  0
 12 58  1  0  0  0  0
 13 59  1  0  0  0  0
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 15 61  1  0  0  0  0
 16 62  1  0  0  0  0
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 44 98  1  1  0  0  0
 45 99  1  0  0  0  0
 45100  1  0  0  0  0
 45101  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022826

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])\C([H])=C([H])/[C@@]([H])(C([H])([H])[H])[C@@]([H])(OC(=O)\C([H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])/C([H])([H])[C@@]([H])(O[H])C([H])([H])[C@@]([H])(O[H])C([H])([H])[C@]([H])(O[H])C([H])([H])[C@@]([H])(O[H])C([H])([H])[C@]([H])(O[H])C([H])([H])[C@@]([H])(O[H])C([H])([H])[C@]([H])(O[H])C1([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C35H56O10/c1-24(2)35-25(3)15-16-27(37)18-29(39)20-31(41)22-33(43)23-32(42)21-30(40)19-28(38)17-26(36)13-11-9-7-5-4-6-8-10-12-14-34(44)45-35/h4-12,14-16,24-33,35-43H,13,17-23H2,1-3H3/b6-4-,7-5-,10-8-,11-9-,14-12-,16-15-/t25-,26-,27+,28-,29-,30+,31+,32-,33-,35+/m1/s1

> <INCHI_KEY>
ZYHODWCHANZFES-XVUSWFQASA-N

> <FORMULA>
C35H56O10

> <MOLECULAR_WEIGHT>
636.823

> <EXACT_MASS>
636.387348003

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
101

> <JCHEM_AVERAGE_POLARIZABILITY>
69.28966226775304

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3Z,5Z,7Z,9Z,11Z,14R,16R,18S,20R,22S,24R,26S,28R,29Z,31R,32S)-14,16,18,20,22,24,26,28-octahydroxy-31-methyl-32-(propan-2-yl)-1-oxacyclodotriaconta-3,5,7,9,11,29-hexaen-2-one

> <ALOGPS_LOGP>
1.74

> <JCHEM_LOGP>
0.7960980746666662

> <ALOGPS_LOGS>
-4.00

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.53200272346665

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.146951163363994

> <JCHEM_PKA_STRONGEST_BASIC>
-2.74519568276472

> <JCHEM_POLAR_SURFACE_AREA>
188.14

> <JCHEM_REFRACTIVITY>
181.99420000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.35e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,5Z,7Z,9Z,11Z,14R,16R,18S,20R,22S,24R,26S,28R,29Z,31R,32S)-14,16,18,20,22,24,26,28-octahydroxy-32-isopropyl-31-methyl-1-oxacyclodotriaconta-3,5,7,9,11,29-hexaen-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

101101  0  0  0  0  0  0  0  0999 V2000
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  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
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 14 15  2  0
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 16 17  2  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
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 22 24  1  0
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 44  4  1  0
  1 46  1  0
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  1 48  1  0
  2 49  1  1
  3 50  1  0
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  3 52  1  0
  4 53  1  6
  8 54  1  0
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 10 56  1  0
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 12 58  1  0
 13 59  1  0
 14 60  1  0
 15 61  1  0
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 19 66  1  1
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 27 76  1  0
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 28 78  1  6
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 30 80  1  0
 30 81  1  0
 31 82  1  6
 32 83  1  0
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 34 86  1  1
 35 87  1  0
 36 88  1  0
 36 89  1  0
 37 90  1  6
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 39 93  1  0
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 41 95  1  0
 42 96  1  0
 43 97  1  0
 44 98  1  1
 45 99  1  0
 45100  1  0
 45101  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -6.574  -1.349   0.263  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.226  -1.590   0.922  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.388  -2.712   1.890  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.161  -1.827  -0.136  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.897  -2.055   0.361  0.00  0.00           O+0
HETATM    6  C   UNK     0      -2.421  -2.785   1.403  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.762  -2.178   2.292  0.00  0.00           O+0
HETATM    8  C   UNK     0      -2.575  -4.215   1.639  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.756  -5.108   0.693  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.843  -4.959  -0.730  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.878  -4.981  -1.649  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.471  -5.153  -1.542  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.552  -4.330  -1.757  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.562  -2.963  -2.181  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.516  -1.837  -1.516  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.442  -1.685  -0.076  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.306  -2.182   0.791  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.469  -2.963   0.374  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.727  -2.562   1.160  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.085  -3.635   1.973  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.893  -2.275   0.251  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.857  -0.839  -0.271  0.00  0.00           C+0
HETATM   23  O   UNK     0       3.615  -0.643  -0.824  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.197   0.093   0.848  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.665   1.444   0.380  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.924   2.249   1.468  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.729   2.114  -0.577  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.531   2.738   0.078  0.00  0.00           C+0
HETATM   29  O   UNK     0       3.196   2.135   1.289  0.00  0.00           O+0
HETATM   30  C   UNK     0       3.680   4.212   0.321  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.962   5.065  -0.683  0.00  0.00           C+0
HETATM   32  O   UNK     0       3.060   6.391  -0.268  0.00  0.00           O+0
HETATM   33  C   UNK     0       1.508   4.731  -0.827  0.00  0.00           C+0
HETATM   34  C   UNK     0       0.800   4.504   0.472  0.00  0.00           C+0
HETATM   35  O   UNK     0       1.259   5.369   1.462  0.00  0.00           O+0
HETATM   36  C   UNK     0      -0.685   4.813   0.247  0.00  0.00           C+0
HETATM   37  C   UNK     0      -1.337   3.656  -0.492  0.00  0.00           C+0
HETATM   38  O   UNK     0      -2.326   4.100  -1.369  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.873   2.710   0.553  0.00  0.00           C+0
HETATM   40  C   UNK     0      -2.847   1.702  -0.022  0.00  0.00           C+0
HETATM   41  O   UNK     0      -3.779   2.418  -0.766  0.00  0.00           O+0
HETATM   42  C   UNK     0      -2.105   0.800  -0.919  0.00  0.00           C+0
HETATM   43  C   UNK     0      -2.727  -0.272  -1.372  0.00  0.00           C+0
HETATM   44  C   UNK     0      -4.118  -0.547  -0.987  0.00  0.00           C+0
HETATM   45  C   UNK     0      -4.997  -0.734  -2.231  0.00  0.00           C+0
HETATM   46  H   UNK     0      -6.717  -1.935  -0.654  0.00  0.00           H+0
HETATM   47  H   UNK     0      -7.383  -1.697   0.969  0.00  0.00           H+0
HETATM   48  H   UNK     0      -6.780  -0.266   0.118  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.008  -0.659   1.504  0.00  0.00           H+0
HETATM   50  H   UNK     0      -6.428  -2.607   2.324  0.00  0.00           H+0
HETATM   51  H   UNK     0      -4.723  -2.648   2.768  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.399  -3.666   1.364  0.00  0.00           H+0
HETATM   53  H   UNK     0      -4.531  -2.604  -0.837  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.531  -4.593   2.696  0.00  0.00           H+0
HETATM   55  H   UNK     0      -2.893  -6.147   1.152  0.00  0.00           H+0
HETATM   56  H   UNK     0      -3.909  -4.865  -1.130  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.352  -4.913  -2.695  0.00  0.00           H+0
HETATM   58  H   UNK     0      -0.075  -6.201  -1.303  0.00  0.00           H+0
HETATM   59  H   UNK     0       1.590  -4.787  -1.637  0.00  0.00           H+0
HETATM   60  H   UNK     0       0.660  -2.731  -3.298  0.00  0.00           H+0
HETATM   61  H   UNK     0       0.519  -0.872  -2.096  0.00  0.00           H+0
HETATM   62  H   UNK     0      -0.355  -1.097   0.367  0.00  0.00           H+0
HETATM   63  H   UNK     0       1.184  -2.028   1.874  0.00  0.00           H+0
HETATM   64  H   UNK     0       2.271  -4.038   0.539  0.00  0.00           H+0
HETATM   65  H   UNK     0       2.750  -2.830  -0.682  0.00  0.00           H+0
HETATM   66  H   UNK     0       3.512  -1.712   1.833  0.00  0.00           H+0
HETATM   67  H   UNK     0       4.535  -4.300   1.363  0.00  0.00           H+0
HETATM   68  H   UNK     0       4.740  -2.913  -0.667  0.00  0.00           H+0
HETATM   69  H   UNK     0       5.864  -2.494   0.694  0.00  0.00           H+0
HETATM   70  H   UNK     0       5.657  -0.759  -1.033  0.00  0.00           H+0
HETATM   71  H   UNK     0       3.000  -0.096  -0.306  0.00  0.00           H+0
HETATM   72  H   UNK     0       4.397   0.158   1.617  0.00  0.00           H+0
HETATM   73  H   UNK     0       6.072  -0.367   1.393  0.00  0.00           H+0
HETATM   74  H   UNK     0       6.640   1.290  -0.158  0.00  0.00           H+0
HETATM   75  H   UNK     0       6.848   2.012   1.800  0.00  0.00           H+0
HETATM   76  H   UNK     0       5.308   2.962  -1.048  0.00  0.00           H+0
HETATM   77  H   UNK     0       4.477   1.443  -1.422  0.00  0.00           H+0
HETATM   78  H   UNK     0       2.666   2.581  -0.601  0.00  0.00           H+0
HETATM   79  H   UNK     0       3.573   2.628   2.066  0.00  0.00           H+0
HETATM   80  H   UNK     0       3.437   4.494   1.371  0.00  0.00           H+0
HETATM   81  H   UNK     0       4.776   4.441   0.208  0.00  0.00           H+0
HETATM   82  H   UNK     0       3.446   4.910  -1.670  0.00  0.00           H+0
HETATM   83  H   UNK     0       2.795   6.970  -1.031  0.00  0.00           H+0
HETATM   84  H   UNK     0       1.341   3.849  -1.500  0.00  0.00           H+0
HETATM   85  H   UNK     0       1.016   5.588  -1.329  0.00  0.00           H+0
HETATM   86  H   UNK     0       0.830   3.457   0.827  0.00  0.00           H+0
HETATM   87  H   UNK     0       1.121   6.298   1.127  0.00  0.00           H+0
HETATM   88  H   UNK     0      -0.817   5.769  -0.274  0.00  0.00           H+0
HETATM   89  H   UNK     0      -1.147   4.910   1.254  0.00  0.00           H+0
HETATM   90  H   UNK     0      -0.538   3.172  -1.089  0.00  0.00           H+0
HETATM   91  H   UNK     0      -1.935   4.216  -2.292  0.00  0.00           H+0
HETATM   92  H   UNK     0      -2.350   3.276   1.395  0.00  0.00           H+0
HETATM   93  H   UNK     0      -1.005   2.180   1.008  0.00  0.00           H+0
HETATM   94  H   UNK     0      -3.295   1.185   0.852  0.00  0.00           H+0
HETATM   95  H   UNK     0      -4.191   3.161  -0.266  0.00  0.00           H+0
HETATM   96  H   UNK     0      -1.058   1.022  -1.198  0.00  0.00           H+0
HETATM   97  H   UNK     0      -2.207  -0.942  -2.026  0.00  0.00           H+0
HETATM   98  H   UNK     0      -4.590   0.254  -0.409  0.00  0.00           H+0
HETATM   99  H   UNK     0      -5.962  -0.210  -2.136  0.00  0.00           H+0
HETATM  100  H   UNK     0      -4.500  -0.304  -3.124  0.00  0.00           H+0
HETATM  101  H   UNK     0      -5.133  -1.814  -2.452  0.00  0.00           H+0
CONECT    1    2   46   47   48                                             
CONECT    2    1    3    4   49                                             
CONECT    3    2   50   51   52                                             
CONECT    4    2    5   44   53                                             
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   54                                                  
CONECT    9    8   10   55                                                  
CONECT   10    9   11   56                                                  
CONECT   11   10   12   57                                                  
CONECT   12   11   13   58                                                  
CONECT   13   12   14   59                                                  
CONECT   14   13   15   60                                                  
CONECT   15   14   16   61                                                  
CONECT   16   15   17   62                                                  
CONECT   17   16   18   63                                                  
CONECT   18   17   19   64   65                                             
CONECT   19   18   20   21   66                                             
CONECT   20   19   67                                                       
CONECT   21   19   22   68   69                                             
CONECT   22   21   23   24   70                                             
CONECT   23   22   71                                                       
CONECT   24   22   25   72   73                                             
CONECT   25   24   26   27   74                                             
CONECT   26   25   75                                                       
CONECT   27   25   28   76   77                                             
CONECT   28   27   29   30   78                                             
CONECT   29   28   79                                                       
CONECT   30   28   31   80   81                                             
CONECT   31   30   32   33   82                                             
CONECT   32   31   83                                                       
CONECT   33   31   34   84   85                                             
CONECT   34   33   35   36   86                                             
CONECT   35   34   87                                                       
CONECT   36   34   37   88   89                                             
CONECT   37   36   38   39   90                                             
CONECT   38   37   91                                                       
CONECT   39   37   40   92   93                                             
CONECT   40   39   41   42   94                                             
CONECT   41   40   95                                                       
CONECT   42   40   43   96                                                  
CONECT   43   42   44   97                                                  
CONECT   44   43   45    4   98                                             
CONECT   45   44   99  100  101                                             
CONECT   46    1                                                            
CONECT   47    1                                                            
CONECT   48    1                                                            
CONECT   49    2                                                            
CONECT   50    3                                                            
CONECT   51    3                                                            
CONECT   52    3                                                            
CONECT   53    4                                                            
CONECT   54    8                                                            
CONECT   55    9                                                            
CONECT   56   10                                                            
CONECT   57   11                                                            
CONECT   58   12                                                            
CONECT   59   13                                                            
CONECT   60   14                                                            
CONECT   61   15                                                            
CONECT   62   16                                                            
CONECT   63   17                                                            
CONECT   64   18                                                            
CONECT   65   18                                                            
CONECT   66   19                                                            
CONECT   67   20                                                            
CONECT   68   21                                                            
CONECT   69   21                                                            
CONECT   70   22                                                            
CONECT   71   23                                                            
CONECT   72   24                                                            
CONECT   73   24                                                            
CONECT   74   25                                                            
CONECT   75   26                                                            
CONECT   76   27                                                            
CONECT   77   27                                                            
CONECT   78   28                                                            
CONECT   79   29                                                            
CONECT   80   30                                                            
CONECT   81   30                                                            
CONECT   82   31                                                            
CONECT   83   32                                                            
CONECT   84   33                                                            
CONECT   85   33                                                            
CONECT   86   34                                                            
CONECT   87   35                                                            
CONECT   88   36                                                            
CONECT   89   36                                                            
CONECT   90   37                                                            
CONECT   91   38                                                            
CONECT   92   39                                                            
CONECT   93   39                                                            
CONECT   94   40                                                            
CONECT   95   41                                                            
CONECT   96   42                                                            
CONECT   97   43                                                            
CONECT   98   44                                                            
CONECT   99   45                                                            
CONECT  100   45                                                            
CONECT  101   45                                                            
MASTER        0    0    0    0    0    0    0    0  101    0  202    0
END

RDKit          3D

101101  0  0  0  0  0  0  0  0999 V2000
   -6.5739   -1.3495    0.2634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2256   -1.5898    0.9219 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3883   -2.7116    1.8896 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1609   -1.8266   -0.1358 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8968   -2.0548    0.3608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4207   -2.7852    1.4035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7620   -2.1778    2.2921 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5749   -4.2153    1.6389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7555   -5.1083    0.6932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8431   -4.9586   -0.7297 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8775   -4.9810   -1.6494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4707   -5.1534   -1.5420 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5522   -4.3296   -1.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5615   -2.9635   -2.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5156   -1.8366   -1.5159 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4420   -1.6849   -0.0759 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3059   -2.1823    0.7907 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4688   -2.9627    0.3736 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7273   -2.5619    1.1604 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0852   -3.6345    1.9732 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8931   -2.2750    0.2510 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8570   -0.8389   -0.2705 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6149   -0.6427   -0.8242 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1965    0.0934    0.8477 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6651    1.4437    0.3796 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9236    2.2491    1.4677 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7293    2.1140   -0.5765 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5314    2.7382    0.0775 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1964    2.1353    1.2887 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6796    4.2115    0.3211 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9622    5.0647   -0.6828 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0598    6.3912   -0.2684 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5078    4.7312   -0.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7996    4.5043    0.4724 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2594    5.3692    1.4625 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6847    4.8133    0.2472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3366    3.6555   -0.4915 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3264    4.1004   -1.3687 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8730    2.7103    0.5527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8468    1.7019   -0.0217 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7794    2.4177   -0.7664 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1051    0.8000   -0.9187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7274   -0.2715   -1.3718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1184   -0.5466   -0.9870 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9970   -0.7341   -2.2308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7170   -1.9345   -0.6536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3825   -1.6973    0.9690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7797   -0.2659    0.1184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0081   -0.6585    1.5042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4283   -2.6067    2.3238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7229   -2.6479    2.7683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3991   -3.6662    1.3636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5312   -2.6045   -0.8373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5315   -4.5928    2.6958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8925   -6.1471    1.1520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9088   -4.8651   -1.1297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3515   -4.9133   -2.6951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0754   -6.2010   -1.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5904   -4.7875   -1.6369 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6595   -2.7309   -3.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5188   -0.8715   -2.0956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3548   -1.0965    0.3673 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1835   -2.0277    1.8741 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2714   -4.0384    0.5389 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7503   -2.8302   -0.6820 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5116   -1.7117    1.8330 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5355   -4.2998    1.3633 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7399   -2.9132   -0.6672 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8640   -2.4935    0.6941 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6566   -0.7585   -1.0327 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0003   -0.0961   -0.3060 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3970    0.1577    1.6173 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.8481    2.0121    1.7998 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3075    2.9619   -1.0477 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4769    1.4434   -1.4222 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6658    2.5809   -0.6005 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5732    2.6275    2.0664 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4368    4.4936    1.3708 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7756    4.4409    0.2075 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4457    4.9101   -1.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7947    6.9700   -1.0306 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3405    3.8493   -1.4995 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0163    5.5882   -1.3294 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8304    3.4568    0.8274 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1207    6.2980    1.1269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8168    5.7691   -0.2740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1475    4.9096    1.2543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5378    3.1722   -1.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9353    4.2157   -2.2918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3505    3.2756    1.3953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0051    2.1804    1.0083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2948    1.1846    0.8517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1911    3.1613   -0.2657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0583    1.0221   -1.1980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2067   -0.9422   -2.0258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5904    0.2535   -0.4085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9618   -0.2102   -2.1359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4995   -0.3041   -3.1243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1334   -1.8139   -2.4524 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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 45101  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₅H₅₆O₁₀

Average Mass

636.8230 Da

Monoisotopic Mass

636.38735 Da

IUPAC Name

(3Z,5Z,7Z,9Z,11Z,14R,16R,18S,20R,22S,24R,26S,28R,29Z,31R,32S)-14,16,18,20,22,24,26,28-octahydroxy-31-methyl-32-(propan-2-yl)-1-oxacyclodotriaconta-3,5,7,9,11,29-hexaen-2-one

Traditional Name

(3Z,5Z,7Z,9Z,11Z,14R,16R,18S,20R,22S,24R,26S,28R,29Z,31R,32S)-14,16,18,20,22,24,26,28-octahydroxy-32-isopropyl-31-methyl-1-oxacyclodotriaconta-3,5,7,9,11,29-hexaen-2-one

CAS Registry Number

Not Available

SMILES

CC(C)C1OC(=O)\C=C/C=C\C=C/C=C\C=C/CC(O)CC(O)CC(O)CC(O)CC(O)CC(O)CC(O)CC(O)\C=C/C1C

InChI Identifier

InChI=1S/C35H56O10/c1-24(2)35-25(3)15-16-27(37)18-29(39)20-31(41)22-33(43)23-32(42)21-30(40)19-28(38)17-26(36)13-11-9-7-5-4-6-8-10-12-14-34(44)45-35/h4-12,14-16,24-33,35-43H,13,17-23H2,1-3H3/b6-4-,7-5-,10-8-,11-9-,14-12-,16-15-

InChI Key

ZYHODWCHANZFES-XVUSWFQASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	8244892
Streptomyces sp. 87-397	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.74	ALOGPS
logP	0.8	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	14.15	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	188.14 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	181.99 m³·mol⁻¹	ChemAxon
Polarizability	69.29 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA017861

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

20010052

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101656826

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kobinata K, Koshino H, Kudo T, Isono K, Osada H: RK-397, a new oxo pentaene antibiotic. J Antibiot (Tokyo). 1993 Oct;46(10):1616-8. doi: 10.7164/antibiotics.46.1616. [PubMed:8244892 ]

Showing NP-Card for RK-397 (NP0022826)

MOL for NP0022826 (RK-397)

3D MOL for NP0022826 (RK-397)

3D SDF for NP0022826 (RK-397)

3D-SDF for NP0022826 (RK-397)

PDB for NP0022826 (RK-397)

3D PDB for NP0022826 (RK-397)

SMILES for NP0022826 (RK-397)

INCHI for NP0022826 (RK-397)

Structure for NP0022826 (RK-397)

3D Structure for NP0022826 (RK-397)