NP-MRD: Showing NP-Card for Vatiamide E (NP0019723)

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Record Information

Version

2.0

Created at

2021-01-06 05:15:15 UTC

Updated at

2021-07-15 17:31:44 UTC

NP-MRD ID

NP0019723

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Vatiamide E

Provided By

NPAtlas

Description

Vatiamide E is found in Moorea. Based on a literature review very few articles have been published on Vatiamide E.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120193D          

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     RDKit          3D

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M  END


  Mrv1652306242120193D          

 72 71  0  0  0  0            999 V2000
    5.7064    2.9107   -0.8994 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7781    2.2678   -1.9335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8793    1.4769   -3.1715 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9105    0.0182   -2.8546 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7673   -0.5767   -2.1385 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4906   -0.4856   -2.8437 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0402   -1.6211   -3.4232 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5266   -1.6266   -4.2891 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.6176    0.7064   -2.9046 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3367    1.1113   -1.4317 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4412    2.2848   -1.4375 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0975    1.9932   -2.1000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3067    3.1255   -0.2824 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5765    3.0248    0.9840 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1624    1.8756    1.6647 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3031    1.3375    2.8216 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0317    0.9307    2.2527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3068    1.2421    1.0713 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9192    0.2159    3.0692 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2355   -0.1989    2.5649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2450    0.2075    3.6454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2789   -1.6625    2.4240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -2.2702    3.3433 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9005   -2.5138    1.5325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6135   -3.9931    1.7696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7823   -2.3201    0.4282 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1756   -1.5690   -0.7018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8425   -1.0731   -0.7175 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8441   -1.3199   -1.7508 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1926   -1.9350    0.6979 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4886   -0.6651    1.3772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9683   -1.9990   -0.6273 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6390    3.4616    0.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9249    1.7371   -3.5608 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1316    1.7581   -3.9022 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8370   -0.2212   -2.2220 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1339   -0.5571   -3.8200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9631   -1.6630   -1.8607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7063   -0.0971   -1.1129 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6303   -2.5108   -3.3413 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9354    1.5322   -3.5134 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5816    0.3783   -3.2542 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2797    1.3407   -0.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9179    0.1703   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9528    2.9863   -2.2385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0715    0.9072   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7031    2.4543   -1.4870 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0312    2.4277   -3.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8350    4.1515   -0.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3306    3.9284    1.6354 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481    1.0057    1.0002 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1691    2.1535    2.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1488    2.0941    3.6089 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8198    0.4179    3.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6652   -0.0304    4.0388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4222    0.3007    1.6231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6821    0.5436    4.5458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9178    0.9607    3.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8444   -0.6588    3.9980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3661   -4.3607    0.7564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7574   -4.1051    2.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5471   -4.4868    2.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9263   -3.3848   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9819   -1.6221   -0.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7683   -0.0289   -0.8196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6147   -2.7753    1.3362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5167   -0.2833    1.0404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7718    0.1425    1.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6363   -0.7984    2.4684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5450   -2.7961   -1.2726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9985   -2.3725   -0.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0315   -0.9991   -1.1008 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  2  0  0  0  0
 26 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
  1 33  1  0  0  0  0
  3 34  1  0  0  0  0
  3 35  1  0  0  0  0
  4 36  1  0  0  0  0
  4 37  1  0  0  0  0
  5 38  1  0  0  0  0
  5 39  1  0  0  0  0
  7 40  1  0  0  0  0
  9 41  1  0  0  0  0
  9 42  1  0  0  0  0
 10 43  1  0  0  0  0
 10 44  1  0  0  0  0
 11 45  1  6  0  0  0
 12 46  1  0  0  0  0
 12 47  1  0  0  0  0
 12 48  1  0  0  0  0
 13 49  1  0  0  0  0
 14 50  1  0  0  0  0
 15 51  1  0  0  0  0
 15 52  1  0  0  0  0
 16 53  1  0  0  0  0
 16 54  1  0  0  0  0
 19 55  1  0  0  0  0
 20 56  1  6  0  0  0
 21 57  1  0  0  0  0
 21 58  1  0  0  0  0
 21 59  1  0  0  0  0
 25 60  1  0  0  0  0
 25 61  1  0  0  0  0
 25 62  1  0  0  0  0
 26 63  1  6  0  0  0
 28 64  1  0  0  0  0
 28 65  1  0  0  0  0
 30 66  1  1  0  0  0
 31 67  1  0  0  0  0
 31 68  1  0  0  0  0
 31 69  1  0  0  0  0
 32 70  1  0  0  0  0
 32 71  1  0  0  0  0
 32 72  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0019723

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C#CC([H])([H])C([H])([H])C([H])([H])C(=C(/[H])Cl)\C([H])([H])C([H])([H])[C@]([H])(C(\[H])=C(\[H])C([H])([H])C([H])([H])C(=O)N([H])[C@@]([H])(C(=O)N(C([H])([H])[H])[C@]([H])(C(=O)N([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H40ClN3O3/c1-7-8-9-13-21(17-26)16-15-19(4)12-10-11-14-22(30)28-20(5)25(32)29(6)23(18(2)3)24(27)31/h1,10,12,17-20,23H,8-9,11,13-16H2,2-6H3,(H2,27,31)(H,28,30)/b12-10-,21-17-/t19-,20+,23-/m0/s1

> <INCHI_KEY>
ZLFSNAGNVUVFPM-MZKRTTBSSA-N

> <FORMULA>
C25H40ClN3O3

> <MOLECULAR_WEIGHT>
466.06

> <EXACT_MASS>
465.2758199

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
51.70279852245623

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4Z,6R,9Z)-N-[(1R)-1-{[(1S)-1-carbamoyl-2-methylpropyl](methyl)carbamoyl}ethyl]-9-(chloromethylidene)-6-methyltetradec-4-en-13-ynamide

> <ALOGPS_LOGP>
4.35

> <JCHEM_LOGP>
3.9731496146666654

> <ALOGPS_LOGS>
-5.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.973294857210291

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.214682336032592

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5844432036994855

> <JCHEM_POLAR_SURFACE_AREA>
92.5

> <JCHEM_REFRACTIVITY>
131.44539999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.89e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4Z,6R,9Z)-N-[(1R)-1-{[(1S)-1-carbamoyl-2-methylpropyl](methyl)carbamoyl}ethyl]-9-(chloromethylidene)-6-methyltetradec-4-en-13-ynamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 72 71  0  0  0  0  0  0  0  0999 V2000
    5.7064    2.9107   -0.8994 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7781    2.2678   -1.9335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8793    1.4769   -3.1715 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9105    0.0182   -2.8546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7673   -0.5767   -2.1385 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4906   -0.4856   -2.8437 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0402   -1.6211   -3.4232 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5266   -1.6266   -4.2891 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.6176    0.7064   -2.9046 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3367    1.1113   -1.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4412    2.2848   -1.4375 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0975    1.9932   -2.1000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3067    3.1255   -0.2824 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5765    3.0248    0.9840 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1624    1.8756    1.6647 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3031    1.3375    2.8216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0317    0.9307    2.2527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3068    1.2421    1.0713 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9192    0.2159    3.0692 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2355   -0.1989    2.5649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2450    0.2075    3.6454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2789   -1.6625    2.4240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -2.2702    3.3433 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9005   -2.5138    1.5325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6135   -3.9931    1.7696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7823   -2.3201    0.4282 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1756   -1.5690   -0.7018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8425   -1.0731   -0.7175 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8441   -1.3199   -1.7508 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1926   -1.9350    0.6979 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4886   -0.6651    1.3772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9683   -1.9990   -0.6273 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6390    3.4616    0.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9249    1.7371   -3.5608 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1316    1.7581   -3.9022 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8370   -0.2212   -2.2220 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1339   -0.5571   -3.8200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9631   -1.6630   -1.8607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7063   -0.0971   -1.1129 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6303   -2.5108   -3.3413 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9354    1.5322   -3.5134 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5816    0.3783   -3.2542 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2797    1.3407   -0.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9179    0.1703   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9528    2.9863   -2.2385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0715    0.9072   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7031    2.4543   -1.4870 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0312    2.4277   -3.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8350    4.1515   -0.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3306    3.9284    1.6354 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481    1.0057    1.0002 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1691    2.1535    2.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1488    2.0941    3.6089 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8198    0.4179    3.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6652   -0.0304    4.0388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4222    0.3007    1.6231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6821    0.5436    4.5458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9178    0.9607    3.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8444   -0.6588    3.9980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3661   -4.3607    0.7564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7574   -4.1051    2.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5471   -4.4868    2.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9263   -3.3848   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9819   -1.6221   -0.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7683   -0.0289   -0.8196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6147   -2.7753    1.3362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5167   -0.2833    1.0404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7718    0.1425    1.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6363   -0.7984    2.4684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5450   -2.7961   -1.2726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9985   -2.3725   -0.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0315   -0.9991   -1.1008 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  2  0
 26 30  1  0
 30 31  1  0
 30 32  1  0
  1 33  1  0
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  5 38  1  0
  5 39  1  0
  7 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  6
 12 46  1  0
 12 47  1  0
 12 48  1  0
 13 49  1  0
 14 50  1  0
 15 51  1  0
 15 52  1  0
 16 53  1  0
 16 54  1  0
 19 55  1  0
 20 56  1  6
 21 57  1  0
 21 58  1  0
 21 59  1  0
 25 60  1  0
 25 61  1  0
 25 62  1  0
 26 63  1  6
 28 64  1  0
 28 65  1  0
 30 66  1  1
 31 67  1  0
 31 68  1  0
 31 69  1  0
 32 70  1  0
 32 71  1  0
 32 72  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.706   2.911  -0.899  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.778   2.268  -1.934  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.879   1.477  -3.172  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.910   0.018  -2.855  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.767  -0.577  -2.139  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.491  -0.486  -2.844  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.040  -1.621  -3.423  0.00  0.00           C+0
HETATM    8 Cl   UNK     0       1.527  -1.627  -4.289  0.00  0.00          Cl+0
HETATM    9  C   UNK     0       2.618   0.706  -2.905  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.337   1.111  -1.432  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.441   2.285  -1.438  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.098   1.993  -2.100  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.307   3.126  -0.282  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.577   3.025   0.984  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.162   1.876   1.665  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.303   1.337   2.822  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.032   0.931   2.253  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.307   1.242   1.071  0.00  0.00           O+0
HETATM   19  N   UNK     0      -0.919   0.216   3.069  0.00  0.00           N+0
HETATM   20  C   UNK     0      -2.236  -0.199   2.565  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.245   0.208   3.645  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.279  -1.663   2.424  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.564  -2.270   3.343  0.00  0.00           O+0
HETATM   24  N   UNK     0      -2.901  -2.514   1.533  0.00  0.00           N+0
HETATM   25  C   UNK     0      -2.614  -3.993   1.770  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.782  -2.320   0.428  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.176  -1.569  -0.702  0.00  0.00           C+0
HETATM   28  N   UNK     0      -1.843  -1.073  -0.718  0.00  0.00           N+0
HETATM   29  O   UNK     0      -3.844  -1.320  -1.751  0.00  0.00           O+0
HETATM   30  C   UNK     0      -5.193  -1.935   0.698  0.00  0.00           C+0
HETATM   31  C   UNK     0      -5.489  -0.665   1.377  0.00  0.00           C+0
HETATM   32  C   UNK     0      -5.968  -1.999  -0.627  0.00  0.00           C+0
HETATM   33  H   UNK     0       5.639   3.462   0.012  0.00  0.00           H+0
HETATM   34  H   UNK     0       6.925   1.737  -3.561  0.00  0.00           H+0
HETATM   35  H   UNK     0       5.132   1.758  -3.902  0.00  0.00           H+0
HETATM   36  H   UNK     0       6.837  -0.221  -2.222  0.00  0.00           H+0
HETATM   37  H   UNK     0       6.134  -0.557  -3.820  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.963  -1.663  -1.861  0.00  0.00           H+0
HETATM   39  H   UNK     0       4.706  -0.097  -1.113  0.00  0.00           H+0
HETATM   40  H   UNK     0       3.630  -2.511  -3.341  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.935   1.532  -3.513  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.582   0.378  -3.254  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.280   1.341  -0.942  0.00  0.00           H+0
HETATM   44  H   UNK     0       1.918   0.170  -1.013  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.953   2.986  -2.239  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.072   0.907  -2.207  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.703   2.454  -1.487  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.031   2.428  -3.114  0.00  0.00           H+0
HETATM   49  H   UNK     0       0.835   4.152  -0.547  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.331   3.928   1.635  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.248   1.006   1.000  0.00  0.00           H+0
HETATM   52  H   UNK     0       3.169   2.154   2.089  0.00  0.00           H+0
HETATM   53  H   UNK     0       1.149   2.094   3.609  0.00  0.00           H+0
HETATM   54  H   UNK     0       1.820   0.418   3.165  0.00  0.00           H+0
HETATM   55  H   UNK     0      -0.665  -0.030   4.039  0.00  0.00           H+0
HETATM   56  H   UNK     0      -2.422   0.301   1.623  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.682   0.544   4.546  0.00  0.00           H+0
HETATM   58  H   UNK     0      -3.918   0.961   3.247  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.844  -0.659   3.998  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.366  -4.361   0.756  0.00  0.00           H+0
HETATM   61  H   UNK     0      -1.757  -4.105   2.430  0.00  0.00           H+0
HETATM   62  H   UNK     0      -3.547  -4.487   2.086  0.00  0.00           H+0
HETATM   63  H   UNK     0      -3.926  -3.385  -0.036  0.00  0.00           H+0
HETATM   64  H   UNK     0      -0.982  -1.622  -0.641  0.00  0.00           H+0
HETATM   65  H   UNK     0      -1.768  -0.029  -0.820  0.00  0.00           H+0
HETATM   66  H   UNK     0      -5.615  -2.775   1.336  0.00  0.00           H+0
HETATM   67  H   UNK     0      -6.517  -0.283   1.040  0.00  0.00           H+0
HETATM   68  H   UNK     0      -4.772   0.143   1.212  0.00  0.00           H+0
HETATM   69  H   UNK     0      -5.636  -0.798   2.468  0.00  0.00           H+0
HETATM   70  H   UNK     0      -5.545  -2.796  -1.273  0.00  0.00           H+0
HETATM   71  H   UNK     0      -6.999  -2.373  -0.348  0.00  0.00           H+0
HETATM   72  H   UNK     0      -6.032  -0.999  -1.101  0.00  0.00           H+0
CONECT    1    2   33                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   34   35                                             
CONECT    4    3    5   36   37                                             
CONECT    5    4    6   38   39                                             
CONECT    6    5    7    9                                                  
CONECT    7    6    8   40                                                  
CONECT    8    7                                                            
CONECT    9    6   10   41   42                                             
CONECT   10    9   11   43   44                                             
CONECT   11   10   12   13   45                                             
CONECT   12   11   46   47   48                                             
CONECT   13   11   14   49                                                  
CONECT   14   13   15   50                                                  
CONECT   15   14   16   51   52                                             
CONECT   16   15   17   53   54                                             
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   55                                                  
CONECT   20   19   21   22   56                                             
CONECT   21   20   57   58   59                                             
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24   60   61   62                                             
CONECT   26   24   27   30   63                                             
CONECT   27   26   28   29                                                  
CONECT   28   27   64   65                                                  
CONECT   29   27                                                            
CONECT   30   26   31   32   66                                             
CONECT   31   30   67   68   69                                             
CONECT   32   30   70   71   72                                             
CONECT   33    1                                                            
CONECT   34    3                                                            
CONECT   35    3                                                            
CONECT   36    4                                                            
CONECT   37    4                                                            
CONECT   38    5                                                            
CONECT   39    5                                                            
CONECT   40    7                                                            
CONECT   41    9                                                            
CONECT   42    9                                                            
CONECT   43   10                                                            
CONECT   44   10                                                            
CONECT   45   11                                                            
CONECT   46   12                                                            
CONECT   47   12                                                            
CONECT   48   12                                                            
CONECT   49   13                                                            
CONECT   50   14                                                            
CONECT   51   15                                                            
CONECT   52   15                                                            
CONECT   53   16                                                            
CONECT   54   16                                                            
CONECT   55   19                                                            
CONECT   56   20                                                            
CONECT   57   21                                                            
CONECT   58   21                                                            
CONECT   59   21                                                            
CONECT   60   25                                                            
CONECT   61   25                                                            
CONECT   62   25                                                            
CONECT   63   26                                                            
CONECT   64   28                                                            
CONECT   65   28                                                            
CONECT   66   30                                                            
CONECT   67   31                                                            
CONECT   68   31                                                            
CONECT   69   31                                                            
CONECT   70   32                                                            
CONECT   71   32                                                            
CONECT   72   32                                                            
MASTER        0    0    0    0    0    0    0    0   72    0  142    0
END

RDKit          3D

72 71  0  0  0  0  0  0  0  0999 V2000
    5.7064    2.9107   -0.8994 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7781    2.2678   -1.9335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8793    1.4769   -3.1715 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9105    0.0182   -2.8546 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7673   -0.5767   -2.1385 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4906   -0.4856   -2.8437 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0402   -1.6211   -3.4232 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5266   -1.6266   -4.2891 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.6176    0.7064   -2.9046 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3367    1.1113   -1.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4412    2.2848   -1.4375 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0975    1.9932   -2.1000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3067    3.1255   -0.2824 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5765    3.0248    0.9840 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1624    1.8756    1.6647 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3031    1.3375    2.8216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0317    0.9307    2.2527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3068    1.2421    1.0713 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9192    0.2159    3.0692 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2355   -0.1989    2.5649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2450    0.2075    3.6454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2789   -1.6625    2.4240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5642   -2.2702    3.3433 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9005   -2.5138    1.5325 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6135   -3.9931    1.7696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7823   -2.3201    0.4282 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1756   -1.5690   -0.7018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8425   -1.0731   -0.7175 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8441   -1.3199   -1.7508 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1926   -1.9350    0.6979 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4886   -0.6651    1.3772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9683   -1.9990   -0.6273 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6390    3.4616    0.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9249    1.7371   -3.5608 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1316    1.7581   -3.9022 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8370   -0.2212   -2.2220 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1339   -0.5571   -3.8200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9631   -1.6630   -1.8607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7063   -0.0971   -1.1129 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6303   -2.5108   -3.3413 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9354    1.5322   -3.5134 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5816    0.3783   -3.2542 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2797    1.3407   -0.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9179    0.1703   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9528    2.9863   -2.2385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0715    0.9072   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7031    2.4543   -1.4870 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0312    2.4277   -3.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8350    4.1515   -0.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3306    3.9284    1.6354 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2481    1.0057    1.0002 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1691    2.1535    2.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1488    2.0941    3.6089 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8198    0.4179    3.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6652   -0.0304    4.0388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4222    0.3007    1.6231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6821    0.5436    4.5458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9178    0.9607    3.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8444   -0.6588    3.9980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3661   -4.3607    0.7564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7574   -4.1051    2.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5471   -4.4868    2.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9263   -3.3848   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9819   -1.6221   -0.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7683   -0.0289   -0.8196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6147   -2.7753    1.3362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5167   -0.2833    1.0404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7718    0.1425    1.2121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6363   -0.7984    2.4684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5450   -2.7961   -1.2726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9985   -2.3725   -0.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0315   -0.9991   -1.1008 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  6  9  1  0
  9 10  1  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(6R)-9-(Chloromethylidene)-N-[(1R)-1-{[(1S)-1-(C-hydroxycarbonimidoyl)-2-methylpropyl](methyl)carbamoyl}ethyl]-6-methyltetradec-4-en-13-ynimidate	Generator

Chemical Formula

C₂₅H₄₀ClN₃O₃

Average Mass

466.0600 Da

Monoisotopic Mass

465.27582 Da

IUPAC Name

(4Z,6R,9Z)-N-[(1R)-1-{[(1S)-1-carbamoyl-2-methylpropyl](methyl)carbamoyl}ethyl]-9-(chloromethylidene)-6-methyltetradec-4-en-13-ynamide

Traditional Name

(4Z,6R,9Z)-N-[(1R)-1-{[(1S)-1-carbamoyl-2-methylpropyl](methyl)carbamoyl}ethyl]-9-(chloromethylidene)-6-methyltetradec-4-en-13-ynamide

CAS Registry Number

Not Available

SMILES

CC(C)[C@H](N(C)C(=O)[C@@H](C)NC(=O)CCC=C[C@H](C)CCC(CCCC#C)=CCl)C(N)=O

InChI Identifier

InChI=1S/C25H40ClN3O3/c1-7-8-9-13-21(17-26)16-15-19(4)12-10-11-14-22(30)28-20(5)25(32)29(6)23(18(2)3)24(27)31/h1,10,12,17-20,23H,8-9,11,13-16H2,2-6H3,(H2,27,31)(H,28,30)/t19-,20+,23-/m0/s1

InChI Key

ZLFSNAGNVUVFPM-MZKRTTBSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Moorea	NPAtlas	31071229

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.35	ALOGPS
logP	3.97	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	13.21	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	92.5 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	131.45 m³·mol⁻¹	ChemAxon
Polarizability	51.7 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA025674

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146682153

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Vatiamide E (NP0019723)

MOL for NP0019723 (Vatiamide E)

3D MOL for NP0019723 (Vatiamide E)

3D SDF for NP0019723 (Vatiamide E)

3D-SDF for NP0019723 (Vatiamide E)

PDB for NP0019723 (Vatiamide E)

3D PDB for NP0019723 (Vatiamide E)

SMILES for NP0019723 (Vatiamide E)

INCHI for NP0019723 (Vatiamide E)

Structure for NP0019723 (Vatiamide E)

3D Structure for NP0019723 (Vatiamide E)