NP-MRD: Showing NP-Card for Bombyxamycin B (NP0019294)

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Record Information

Version

2.0

Created at

2021-01-06 04:51:02 UTC

Updated at

2024-09-12 20:21:02 UTC

NP-MRD ID

NP0019294

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bombyxamycin B

Provided By

NPAtlas

Description

Bombyxamycin B belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage. Bombyxamycin B is found in Streptomyces sp. Bombyxamycin B was first documented in 2019 (PMID: 30801193). Based on a literature review very few articles have been published on Bombyxamycin B.

Structure

MOL SDF PDB SMILES InChI

NP0019294
  Mrv2104 05272322533D          

 64 65  0  0  0  0            999 V2000
   -4.5306   -5.6083   -0.3865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8919   -4.6036    0.5865 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6123   -3.2697    0.4741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3404   -2.0866    1.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2894   -1.7909    1.9924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9004   -0.5312    2.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8178   -0.1966    3.1468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2582    1.0144    3.3128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6604    2.2440    2.6617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8909    3.3164    2.4162 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5089    3.4783    2.7416 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3003    4.3093    2.0485 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7499    4.3716    2.3514 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1906    4.2879    3.4922 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6731    4.5764    1.2069 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5317    3.9749    0.0147 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4943    3.0877   -0.2363 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8179    2.3604   -1.4476 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9104    2.9035   -2.5613 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5851    0.8997   -1.1061 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7434    0.0267   -1.6851 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5834   -1.3181   -1.1737 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7158   -2.2574   -1.5806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2328   -2.1797   -2.6718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2616   -3.0198   -2.8772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6740   -4.1153   -1.9662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8276   -5.2547   -2.3818 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9157   -3.6963   -0.6864 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3594   -4.5749    0.3767 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3214    2.6227   -1.7058 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6874    2.5592   -3.0829 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5161    4.0187   -1.1163 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8462    4.2487   -0.6710 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0592   -6.5932   -0.2980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4397   -5.2789   -1.4271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5977   -5.7372   -0.1703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0822   -4.9986    1.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4740   -3.2743   -0.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9827   -1.2472    0.7763 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8070   -2.6221    2.4967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3856    0.2855    1.7177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3865   -1.0259    3.7069 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4082    1.0794    3.9896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6873    2.2902    2.3051 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3490    4.1397    1.8678 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9329    2.8731    3.5391 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9436    4.8802    1.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5521    5.1704    1.4357 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8534    2.8139   -2.2832 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0658    2.3820   -3.5113 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0849    3.9724   -2.7275 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1543    0.5625   -0.2382 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1276    0.3267   -2.5268 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2209   -1.5838   -0.3291 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7360   -3.2014   -1.0337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0650   -1.4064   -3.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8629   -2.9473   -3.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8755   -2.7042   -0.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9784   -5.5858    0.1886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8623   -4.2247    1.2865 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9625    1.9086   -1.1711 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5951    1.6319   -3.3659 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2562    4.8012   -1.8367 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1054    3.5158   -0.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 18 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 29  2  1  0  0  0  0
 32 16  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  2 37  1  1  0  0  0
  3 38  1  0  0  0  0
  4 39  1  0  0  0  0
  5 40  1  0  0  0  0
  6 41  1  0  0  0  0
  7 42  1  0  0  0  0
  8 43  1  0  0  0  0
  9 44  1  0  0  0  0
 10 45  1  0  0  0  0
 11 46  1  0  0  0  0
 12 47  1  0  0  0  0
 15 48  1  0  0  0  0
 19 49  1  0  0  0  0
 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
 20 52  1  0  0  0  0
 21 53  1  0  0  0  0
 22 54  1  0  0  0  0
 23 55  1  0  0  0  0
 24 56  1  0  0  0  0
 25 57  1  0  0  0  0
 28 58  1  0  0  0  0
 29 59  1  0  0  0  0
 29 60  1  0  0  0  0
 30 61  1  1  0  0  0
 31 62  1  0  0  0  0
 32 63  1  6  0  0  0
 33 64  1  0  0  0  0
M  END

NP0019294
  Mrv2104 05272322533D          

 64 65  0  0  0  0            999 V2000
   -4.5306   -5.6083   -0.3865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8919   -4.6036    0.5865 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6123   -3.2697    0.4741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3404   -2.0866    1.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2894   -1.7909    1.9924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9004   -0.5312    2.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8178   -0.1966    3.1468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2582    1.0144    3.3128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6604    2.2440    2.6617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8909    3.3164    2.4162 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5089    3.4783    2.7416 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3003    4.3093    2.0485 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7499    4.3716    2.3514 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1906    4.2879    3.4922 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6731    4.5764    1.2069 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5317    3.9749    0.0147 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4943    3.0877   -0.2363 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8179    2.3604   -1.4476 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9104    2.9035   -2.5613 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5851    0.8997   -1.1061 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7434    0.0267   -1.6851 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5834   -1.3181   -1.1737 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7158   -2.2574   -1.5806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2328   -2.1797   -2.6718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2616   -3.0198   -2.8772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6740   -4.1153   -1.9662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8276   -5.2547   -2.3818 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9157   -3.6963   -0.6864 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3594   -4.5749    0.3767 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3214    2.6227   -1.7058 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6874    2.5592   -3.0829 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5161    4.0187   -1.1163 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8462    4.2487   -0.6710 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0592   -6.5932   -0.2980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4397   -5.2789   -1.4271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5977   -5.7372   -0.1703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0822   -4.9986    1.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4740   -3.2743   -0.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9827   -1.2472    0.7763 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8070   -2.6221    2.4967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3856    0.2855    1.7177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3865   -1.0259    3.7069 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4082    1.0794    3.9896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6873    2.2902    2.3051 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3490    4.1397    1.8678 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9329    2.8731    3.5391 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9436    4.8802    1.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5521    5.1704    1.4357 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8534    2.8139   -2.2832 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0658    2.3820   -3.5113 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0849    3.9724   -2.7275 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1543    0.5625   -0.2382 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1276    0.3267   -2.5268 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2209   -1.5838   -0.3291 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7360   -3.2014   -1.0337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0650   -1.4064   -3.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8629   -2.9473   -3.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8755   -2.7042   -0.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9784   -5.5858    0.1886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8623   -4.2247    1.2865 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9625    1.9086   -1.1711 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5951    1.6319   -3.3659 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2562    4.8012   -1.8367 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1054    3.5158   -0.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
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 29  2  1  0  0  0  0
 32 16  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  2 37  1  1  0  0  0
  3 38  1  0  0  0  0
  4 39  1  0  0  0  0
  5 40  1  0  0  0  0
  6 41  1  0  0  0  0
  7 42  1  0  0  0  0
  8 43  1  0  0  0  0
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 10 45  1  0  0  0  0
 11 46  1  0  0  0  0
 12 47  1  0  0  0  0
 15 48  1  0  0  0  0
 19 49  1  0  0  0  0
 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
 20 52  1  0  0  0  0
 21 53  1  0  0  0  0
 22 54  1  0  0  0  0
 23 55  1  0  0  0  0
 24 56  1  0  0  0  0
 25 57  1  0  0  0  0
 28 58  1  0  0  0  0
 29 59  1  0  0  0  0
 29 60  1  0  0  0  0
 30 61  1  1  0  0  0
 31 62  1  0  0  0  0
 32 63  1  6  0  0  0
 33 64  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0019294

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])\C2=C([H])\C(=O)\C([H])=C(/[H])\C(\[H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C(/[H])\C(\[H])=C([H])/[C@@]([H])(C([H])([H])[H])C([H])([H])N([H])C(=O)\C([H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])\[C@](O2)(C([H])([H])[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1/C27H31NO5/c1-21-15-11-7-5-3-4-6-8-12-16-22(29)19-23-25(31)26(32)27(2,33-23)18-14-10-9-13-17-24(30)28-20-21/h3-19,21,25-26,31-32H,20H2,1-2H3,(H,28,30)/b4-3-,7-5+,8-6-,10-9-,15-11-,16-12+,17-13-,18-14+,23-19-/t21-,25-,26+,27-/s2

> <INCHI_KEY>
WMJODBDPGQNYNL-JSGQYBBONA-N

> <FORMULA>
C27H31NO5

> <MOLECULAR_WEIGHT>
449.547

> <EXACT_MASS>
449.220223102

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
50.014600630736155

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2E,4Z,6Z,11R,12Z,14E,16Z,18Z,20E,23Z,25S,26S)-25,26-dihydroxy-1,11-dimethyl-27-oxa-9-azabicyclo[22.2.1]heptacosa-2,4,6,12,14,16,18,20,23-nonaene-8,22-dione

> <JCHEM_LOGP>
2.7804517029999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.93589503139168

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.525841343783664

> <JCHEM_PKA_STRONGEST_BASIC>
-0.14003473367834393

> <JCHEM_POLAR_SURFACE_AREA>
95.86000000000001

> <JCHEM_REFRACTIVITY>
141.0763

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2E,4Z,6Z,11R,12Z,14E,16Z,18Z,20E,23Z,25S,26S)-25,26-dihydroxy-1,11-dimethyl-27-oxa-9-azabicyclo[22.2.1]heptacosa-2,4,6,12,14,16,18,20,23-nonaene-8,22-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-MAY-23   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: NP0019294                                         
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-23         0                                  
HETATM    1  C   UNK     0      -4.531  -5.608  -0.387  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.892  -4.604   0.587  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.612  -3.270   0.474  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.340  -2.087   1.048  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.289  -1.791   1.992  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.900  -0.531   2.245  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.818  -0.197   3.147  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.258   1.014   3.313  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.660   2.244   2.662  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.891   3.316   2.416  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.509   3.478   2.742  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.300   4.309   2.049  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.750   4.372   2.351  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.191   4.288   3.492  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.673   4.576   1.207  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.532   3.975   0.015  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.494   3.088  -0.236  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.818   2.360  -1.448  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.910   2.904  -2.561  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.585   0.900  -1.106  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.743   0.027  -1.685  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.583  -1.318  -1.174  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.716  -2.257  -1.581  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.233  -2.180  -2.672  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.262  -3.020  -2.877  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.674  -4.115  -1.966  0.00  0.00           C+0
HETATM   27  O   UNK     0      -1.828  -5.255  -2.382  0.00  0.00           O+0
HETATM   28  N   UNK     0      -1.916  -3.696  -0.686  0.00  0.00           N+0
HETATM   29  C   UNK     0      -2.359  -4.575   0.377  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.321   2.623  -1.706  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.687   2.559  -3.083  0.00  0.00           O+0
HETATM   32  C   UNK     0       4.516   4.019  -1.116  0.00  0.00           C+0
HETATM   33  O   UNK     0       5.846   4.249  -0.671  0.00  0.00           O+0
HETATM   34  H   UNK     0      -4.059  -6.593  -0.298  0.00  0.00           H+0
HETATM   35  H   UNK     0      -4.440  -5.279  -1.427  0.00  0.00           H+0
HETATM   36  H   UNK     0      -5.598  -5.737  -0.170  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.082  -4.999   1.594  0.00  0.00           H+0
HETATM   38  H   UNK     0      -5.474  -3.274  -0.196  0.00  0.00           H+0
HETATM   39  H   UNK     0      -4.983  -1.247   0.776  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.807  -2.622   2.497  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.386   0.286   1.718  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.387  -1.026   3.707  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.408   1.079   3.990  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.687   2.290   2.305  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.349   4.140   1.868  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.933   2.873   3.539  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.944   4.880   1.200  0.00  0.00           H+0
HETATM   48  H   UNK     0       4.552   5.170   1.436  0.00  0.00           H+0
HETATM   49  H   UNK     0       0.853   2.814  -2.283  0.00  0.00           H+0
HETATM   50  H   UNK     0       2.066   2.382  -3.511  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.085   3.972  -2.728  0.00  0.00           H+0
HETATM   52  H   UNK     0       3.154   0.563  -0.238  0.00  0.00           H+0
HETATM   53  H   UNK     0       1.128   0.327  -2.527  0.00  0.00           H+0
HETATM   54  H   UNK     0       2.221  -1.584  -0.329  0.00  0.00           H+0
HETATM   55  H   UNK     0       0.736  -3.201  -1.034  0.00  0.00           H+0
HETATM   56  H   UNK     0      -0.065  -1.406  -3.417  0.00  0.00           H+0
HETATM   57  H   UNK     0      -1.863  -2.947  -3.777  0.00  0.00           H+0
HETATM   58  H   UNK     0      -1.876  -2.704  -0.485  0.00  0.00           H+0
HETATM   59  H   UNK     0      -1.978  -5.586   0.189  0.00  0.00           H+0
HETATM   60  H   UNK     0      -1.862  -4.225   1.287  0.00  0.00           H+0
HETATM   61  H   UNK     0       4.963   1.909  -1.171  0.00  0.00           H+0
HETATM   62  H   UNK     0       4.595   1.632  -3.366  0.00  0.00           H+0
HETATM   63  H   UNK     0       4.256   4.801  -1.837  0.00  0.00           H+0
HETATM   64  H   UNK     0       6.105   3.516  -0.088  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3   29   37                                             
CONECT    3    2    4   38                                                  
CONECT    4    3    5   39                                                  
CONECT    5    4    6   40                                                  
CONECT    6    5    7   41                                                  
CONECT    7    6    8   42                                                  
CONECT    8    7    9   43                                                  
CONECT    9    8   10   44                                                  
CONECT   10    9   11   45                                                  
CONECT   11   10   12   46                                                  
CONECT   12   11   13   47                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   48                                                  
CONECT   16   15   17   32                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20   30                                             
CONECT   19   18   49   50   51                                             
CONECT   20   18   21   52                                                  
CONECT   21   20   22   53                                                  
CONECT   22   21   23   54                                                  
CONECT   23   22   24   55                                                  
CONECT   24   23   25   56                                                  
CONECT   25   24   26   57                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   58                                                  
CONECT   29   28    2   59   60                                             
CONECT   30   18   31   32   61                                             
CONECT   31   30   62                                                       
CONECT   32   30   33   16   63                                             
CONECT   33   32   64                                                       
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    2                                                            
CONECT   38    3                                                            
CONECT   39    4                                                            
CONECT   40    5                                                            
CONECT   41    6                                                            
CONECT   42    7                                                            
CONECT   43    8                                                            
CONECT   44    9                                                            
CONECT   45   10                                                            
CONECT   46   11                                                            
CONECT   47   12                                                            
CONECT   48   15                                                            
CONECT   49   19                                                            
CONECT   50   19                                                            
CONECT   51   19                                                            
CONECT   52   20                                                            
CONECT   53   21                                                            
CONECT   54   22                                                            
CONECT   55   23                                                            
CONECT   56   24                                                            
CONECT   57   25                                                            
CONECT   58   28                                                            
CONECT   59   29                                                            
CONECT   60   29                                                            
CONECT   61   30                                                            
CONECT   62   31                                                            
CONECT   63   32                                                            
CONECT   64   33                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  130    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₁NO₅

Average Mass

449.5470 Da

Monoisotopic Mass

449.22022 Da

IUPAC Name

(1R,2E,4Z,6Z,11R,12Z,14E,16Z,18Z,20E,23Z,25S,26S)-25,26-dihydroxy-1,11-dimethyl-27-oxa-9-azabicyclo[22.2.1]heptacosa-2,4,6,12,14,16,18,20,23-nonaene-8,22-dione

Traditional Name

(1R,2E,4Z,6Z,11R,12Z,14E,16Z,18Z,20E,23Z,25S,26S)-25,26-dihydroxy-1,11-dimethyl-27-oxa-9-azabicyclo[22.2.1]heptacosa-2,4,6,12,14,16,18,20,23-nonaene-8,22-dione

CAS Registry Number

Not Available

SMILES

[H]O[C@]1([H])\C2=C([H])\C(=O)\C([H])=C(/[H])\C(\[H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C(/[H])\C(\[H])=C([H])/[C@@]([H])(C([H])([H])[H])C([H])([H])N([H])C(=O)\C([H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])\[C@](O2)(C([H])([H])[H])[C@@]1([H])O[H]

InChI Identifier

InChI=1/C27H31NO5/c1-21-15-11-7-5-3-4-6-8-12-16-22(29)19-23-25(31)26(32)27(2,33-23)18-14-10-9-13-17-24(30)28-20-21/h3-19,21,25-26,31-32H,20H2,1-2H3,(H,28,30)/b4-3-,7-5+,8-6-,10-9-,15-11-,16-12+,17-13-,18-14+,23-19-/t21-,25-,26+,27-/s2

InChI Key

WMJODBDPGQNYNL-JSGQYBBONA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	30801193

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as n-acyl amines. These are compounds containing a fatty acid moiety linked to an amine group through an ester linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty amides

Direct Parent

N-acyl amines

Alternative Parents

Substituents

N-acyl-amine
Monosaccharide
Alpha,beta-unsaturated ketone
Tetrahydrofuran
Enone
Acryloyl-group
Cyclic ketone
Secondary alcohol
Lactam
Ketone
Carboxamide group
Oxacycle
Azacycle
Organoheterocyclic compound
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.78	ChemAxon
pKa (Strongest Acidic)	12.53	ChemAxon
pKa (Strongest Basic)	-0.14	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	95.86 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	141.08 m³·mol⁻¹	ChemAxon
Polarizability	50.01 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA026756

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Shin YH, Beom JY, Chung B, Shin Y, Byun WS, Moon K, Bae M, Lee SK, Oh KB, Shin J, Yoon YJ, Oh DC: Bombyxamycins A and B, Cytotoxic Macrocyclic Lactams from an Intestinal Bacterium of the Silkworm Bombyx mori. Org Lett. 2019 Mar 15;21(6):1804-1808. doi: 10.1021/acs.orglett.9b00384. Epub 2019 Feb 25. [PubMed:30801193 ]

Showing NP-Card for Bombyxamycin B (NP0019294)

MOL for NP0019294 (Bombyxamycin B)

3D MOL for NP0019294 (Bombyxamycin B)

3D SDF for NP0019294 (Bombyxamycin B)

3D-SDF for NP0019294 (Bombyxamycin B)

PDB for NP0019294 (Bombyxamycin B)

3D PDB for NP0019294 (Bombyxamycin B)

SMILES for NP0019294 (Bombyxamycin B)

INCHI for NP0019294 (Bombyxamycin B)

Structure for NP0019294 (Bombyxamycin B)

3D Structure for NP0019294 (Bombyxamycin B)