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Record Information
Version1.0
Created at2021-01-05 19:19:47 UTC
Updated at2021-07-15 17:04:11 UTC
NP-MRD IDNP0009761
Secondary Accession NumbersNone
Natural Product Identification
Common NameDivergolide C
Provided ByNPAtlasNPAtlas Logo
Description(9R,10Z,12S,13S,16S)-9-ethyl-4,12,19,23,25-pentahydroxy-3,16-dimethyl-13-(2-methylprop-1-en-1-yl)-14-oxa-20-azatetracyclo[19.3.1.0⁵,²⁴.0¹⁶,²²]Pentacosa-1(25),2,4,10,17,19,21,23-octaene-6,15-dione belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. Divergolide C is found in Streptomyces sp. It was first documented in 2002 (PMID: 28267306). Based on a literature review very few articles have been published on (9R,10Z,12S,13S,16S)-9-ethyl-4,12,19,23,25-pentahydroxy-3,16-dimethyl-13-(2-methylprop-1-en-1-yl)-14-oxa-20-azatetracyclo[19.3.1.0⁵,²⁴.0¹⁶,²²]Pentacosa-1(25),2,4,10,17,19,21,23-octaene-6,15-dione (PMID: 21308920) (PMID: 26389440) (PMID: 26389428) (PMID: 24661134).
Structure
Data?1621576134
SynonymsNot Available
Chemical FormulaC31H35NO8
Average Mass549.6200 Da
Monoisotopic Mass549.23627 Da
IUPAC Name(9R,10Z,12S,13S,16S)-9-ethyl-4,12,23,25-tetrahydroxy-3,16-dimethyl-13-(2-methylprop-1-en-1-yl)-14-oxa-20-azatetracyclo[19.3.1.0^{5,24}.0^{16,22}]pentacosa-1(25),2,4,10,17,21,23-heptaene-6,15,19-trione
Traditional Name(9R,10Z,12S,13S,16S)-9-ethyl-4,12,23,25-tetrahydroxy-3,16-dimethyl-13-(2-methylprop-1-en-1-yl)-14-oxa-20-azatetracyclo[19.3.1.0^{5,24}.0^{16,22}]pentacosa-1(25),2,4,10,17,21,23-heptaene-6,15,19-trione
CAS Registry NumberNot Available
SMILES
CC[C@@H]1CCC(=O)C2=C3C(O)=C4C(NC(=O)C=C[C@]4(C)C(=O)O[C@@H](C=C(C)C)[C@@H](O)\C=C/1)=C(O)C3=CC(C)=C2O
InChI Identifier
InChI=1S/C31H35NO8/c1-6-17-7-9-19(33)21(13-15(2)3)40-30(39)31(5)12-11-22(35)32-26-25(31)29(38)23-18(28(26)37)14-16(4)27(36)24(23)20(34)10-8-17/h7,9,11-14,17,19,21,33,36-38H,6,8,10H2,1-5H3,(H,32,35)/b9-7-/t17-,19-,21-,31-/m0/s1
InChI KeyCCFSPNORXJJQIM-LIDOOXRLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolactams
Sub ClassNot Available
Direct ParentMacrolactams
Alternative Parents
Substituents
  • Macrolactam
  • Macrolide
  • Benzazepine
  • 2-naphthol
  • 1-naphthol
  • Naphthalene
  • Hydroquinone
  • Aryl ketone
  • Aryl alkyl ketone
  • Phenol
  • Azepine
  • Benzenoid
  • Vinylogous acid
  • Ketone
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Lactam
  • Lactone
  • Carboxylic acid ester
  • Carboxamide group
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Oxacycle
  • Azacycle
  • Polyol
  • Organoheterocyclic compound
  • Organooxygen compound
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.69ALOGPS
logP5.56ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)8.17ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area153.39 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity154.79 m³·mol⁻¹ChemAxon
Polarizability58.75 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA024807
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID74169143
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound102590737
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ding L, Maier A, Fiebig HH, Gorls H, Lin WH, Peschel G, Hertweck C: Divergolides A-D from a mangrove endophyte reveal an unparalleled plasticity in ansa-macrolide biosynthesis. Angew Chem Int Ed Engl. 2011 Feb 11;50(7):1630-4. doi: 10.1002/anie.201006165. Epub 2011 Jan 11. [PubMed:21308920 ]
  2. Authors unspecified: Medicinal Mushrooms (PDQ(R)): Patient Version. 2002. [PubMed:28267306 ]
  3. Authors unspecified: Nutrition in Cancer Care (PDQ(R)): Patient Version. 2002. [PubMed:26389440 ]
  4. Authors unspecified: Lung Cancer Screening (PDQ(R)): Patient Version. 2002. [PubMed:26389428 ]
  5. Nawrat CC, Kitson RR, Moody CJ: Toward the total synthesis of hygrocin B and divergolide C: construction of the naphthoquinone-azepinone core. Org Lett. 2014 Apr 4;16(7):1896-9. doi: 10.1021/ol5003847. Epub 2014 Mar 25. [PubMed:24661134 ]